Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.90332 * 2 1 4 4 C 1.54944 * 110.98820 * 123.86196 * 2 1 3 5 5 N 1.47527 * 104.39230 * 156.56113 * 4 2 1 6 6 C 1.34780 * 125.76657 * 152.31111 * 5 4 2 7 7 O 1.21280 * 120.00017 * 180.02562 * 6 5 4 8 8 C 1.50693 * 120.00035 * 0.02757 * 6 5 4 9 9 S 1.81003 * 109.47246 * 179.97438 * 8 6 5 10 10 C 1.76204 * 100.00020 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00169 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00113 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99400 * 0.26998 * 12 10 9 14 14 Si 1.86797 * 120.00274 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47012 * 89.99211 * 14 12 10 16 16 H 1.48497 * 109.47293 * 209.99711 * 14 12 10 17 17 H 1.48501 * 109.46813 * 329.99944 * 14 12 10 18 18 C 1.46915 * 108.47104 * 332.57803 * 5 4 2 19 19 H 1.08999 * 111.62004 * 127.83060 * 18 5 4 20 20 C 1.56336 * 108.67232 * 253.46213 * 18 5 4 21 21 C 1.54923 * 103.23794 * 77.86678 * 20 18 5 22 22 C 1.54348 * 103.78482 * 39.01740 * 21 20 18 23 23 C 1.53829 * 106.43041 * 333.05058 * 22 21 20 24 24 H 1.09001 * 112.39469 * 128.52800 * 23 22 21 25 25 H 1.09004 * 109.46875 * 312.24739 * 1 2 3 26 26 H 1.08997 * 109.46911 * 72.24788 * 1 2 3 27 27 H 1.09003 * 109.47044 * 192.24806 * 1 2 3 28 28 H 1.08996 * 109.47471 * 182.40599 * 3 2 1 29 29 H 1.09000 * 109.46974 * 302.41157 * 3 2 1 30 30 H 1.09000 * 109.46991 * 62.40509 * 3 2 1 31 31 H 1.08999 * 110.45488 * 37.83174 * 4 2 1 32 32 H 1.09000 * 110.44686 * 275.28751 * 4 2 1 33 33 H 1.08999 * 109.47167 * 59.99864 * 8 6 5 34 34 H 1.09007 * 109.46897 * 299.99656 * 8 6 5 35 35 H 0.96994 * 120.00458 * 359.73111 * 13 12 10 36 36 H 1.08997 * 110.83524 * 319.26217 * 20 18 5 37 37 H 1.09010 * 110.42816 * 196.27127 * 20 18 5 38 38 H 1.09004 * 110.56007 * 280.43992 * 21 20 18 39 39 H 1.09005 * 110.68969 * 157.65949 * 21 20 18 40 40 H 1.09003 * 110.06161 * 213.81243 * 22 21 20 41 41 H 1.09002 * 110.11221 * 92.31900 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0759 1.4293 0.0000 4 6 2.0850 -0.8061 1.2013 5 7 3.4404 -1.2072 0.7789 6 6 4.4827 -1.4464 1.5993 7 8 5.5559 -1.7712 1.1373 8 6 4.3144 -1.3103 3.0906 9 16 5.8807 -1.6952 3.9121 10 6 5.4088 -1.4643 5.5940 11 1 4.3984 -1.1696 5.8358 12 6 6.3361 -1.6603 6.6081 13 7 7.5693 -2.0134 6.3130 14 14 5.8361 -1.4148 8.3911 15 1 5.3304 -2.6968 8.9444 16 1 7.0128 -0.9659 9.1779 17 1 4.7675 -0.3866 8.4684 18 6 3.4640 -1.2956 -0.6874 19 1 4.2835 -0.7155 -1.1116 20 6 3.4977 -2.8038 -1.0974 21 6 2.0283 -3.2563 -0.9067 22 6 1.2044 -2.0508 -1.4070 23 6 2.0854 -0.8065 -1.2021 24 1 2.1689 -0.2034 -2.1062 25 1 -0.3633 0.6910 0.7608 26 1 -0.3633 0.3133 -0.9787 27 1 -0.3633 -1.0043 0.2180 28 1 3.1647 1.4024 -0.0431 29 1 1.6910 1.9652 -0.8676 30 1 1.7608 1.9385 0.9108 31 1 1.4683 -1.6853 1.3875 32 1 2.1335 -0.1785 2.0911 33 1 3.5449 -2.0016 3.4340 34 1 4.0190 -0.2890 3.3312 35 1 7.8290 -2.1405 5.3871 36 1 4.1632 -3.3683 -0.4444 37 1 3.8015 -2.9082 -2.1391 38 1 1.8213 -3.4512 0.1456 39 1 1.8166 -4.1407 -1.5075 40 1 0.2863 -1.9587 -0.8267 41 1 0.9678 -2.1715 -2.4642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336317659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -49.086189 kcal Electronic energy + Delta-G solvation = -20950.313256 eV Core-core repulsion = 17955.551719 eV Total energy + Delta-G solvation = -2994.761538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08832 -38.17615 -34.83808 -33.68112 -32.51589 -29.93694 -28.27642 -27.93739 -27.01027 -26.00926 -24.79497 -21.38158 -20.97245 -18.91689 -18.87821 -18.12966 -16.87403 -16.19983 -15.56624 -15.16331 -14.96707 -14.24327 -14.17052 -13.85442 -13.79564 -13.58672 -12.85626 -12.75938 -12.39616 -12.35035 -12.20214 -12.04298 -11.98335 -11.75764 -11.65404 -11.32700 -11.10125 -10.99924 -10.90298 -10.72874 -10.57249 -10.32157 -10.18656 -9.56004 -9.40771 -9.00182 -8.46760 -8.20250 -6.65619 -6.61208 -3.98752 2.85626 3.02315 3.34093 3.39496 3.49724 3.57547 4.05443 4.19899 4.26469 4.40521 4.72798 4.77288 4.89638 4.99824 5.06880 5.18815 5.23440 5.31272 5.33104 5.36171 5.43572 5.47395 5.50980 5.58027 5.62820 5.65824 5.72094 5.76034 5.81948 5.82742 5.92038 5.95912 6.01260 6.04110 6.13726 6.19744 6.22783 6.56324 7.69885 7.93439 8.51187 8.53877 9.28352 10.82855 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.004221 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.102499 B = 6632.420557 C = 7110.712785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.137 4.137 4 C 0.110 3.890 5 N -0.614 5.614 6 C 0.547 3.453 7 O -0.516 6.516 8 C -0.124 4.124 9 S -0.117 6.117 10 C -0.607 4.607 11 H 0.065 0.935 12 C 0.036 3.964 13 N -0.885 5.885 14 Si 1.087 2.913 15 H -0.284 1.284 16 H -0.280 1.280 17 H -0.287 1.287 18 C 0.139 3.861 19 H 0.085 0.915 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.091 4.091 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.278 0.722 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 3.521 -15.797 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.076 4.076 3 C -0.194 4.194 4 C -0.013 4.013 5 N -0.350 5.350 6 C 0.336 3.664 7 O -0.391 6.391 8 C -0.275 4.275 9 S 0.110 5.890 10 C -0.755 4.755 11 H 0.083 0.917 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.913 3.087 15 H -0.211 1.211 16 H -0.205 1.205 17 H -0.213 1.213 18 C 0.036 3.964 19 H 0.103 0.897 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.166 4.166 23 C -0.110 4.110 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.049 2.959 -14.871 21.363 hybrid contribution -1.987 0.485 -0.890 2.230 sum -17.035 3.443 -15.761 23.462 Atomic orbital electron populations 1.21862 0.93407 1.02062 1.02197 1.21801 0.95659 0.95387 0.94743 1.21749 1.01471 0.94291 1.01882 1.22478 0.83371 0.98132 0.97365 1.48429 1.10581 1.69945 1.06084 1.19945 0.82473 0.76170 0.87859 1.90701 1.25460 1.45839 1.77087 1.23290 1.05876 1.04910 0.93403 1.84809 1.10133 1.90565 1.03529 1.23725 1.02133 1.58534 0.91080 0.91650 1.26046 0.92949 0.93258 1.05234 1.70762 1.17615 1.40870 1.22667 0.83294 0.75541 0.76667 0.73206 1.21056 1.20497 1.21309 1.22488 0.97115 0.96120 0.80722 0.89711 1.23061 0.96918 0.95708 1.01388 1.22355 0.94975 0.97402 1.01165 1.22456 0.99021 0.93702 1.01400 1.22855 0.93923 0.96594 0.97659 0.88943 0.92242 0.92042 0.91650 0.92241 0.92382 0.92258 0.91336 0.90458 0.89239 0.89216 0.90950 0.90740 0.91110 0.91709 0.91756 0.90149 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 7.77 37.16 0.29 -0.65 16 2 C -0.08 -0.66 0.80 -152.40 -0.12 -0.79 16 3 C -0.14 -1.24 8.62 37.16 0.32 -0.92 16 4 C 0.11 1.25 5.03 -2.45 -0.01 1.24 16 5 N -0.61 -9.03 2.81 -160.54 -0.45 -9.48 16 6 C 0.55 10.76 7.61 -10.99 -0.08 10.67 16 7 O -0.52 -12.08 15.88 5.56 0.09 -11.99 16 8 C -0.12 -2.61 5.13 36.00 0.18 -2.43 16 9 S -0.12 -3.21 19.60 -107.50 -2.11 -5.32 16 10 C -0.61 -17.71 9.50 30.94 0.29 -17.42 16 11 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 12 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 13 N -0.88 -27.81 13.67 55.49 0.76 -27.05 16 14 Si 1.09 25.19 29.92 -169.99 -5.09 20.11 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.14 1.75 3.41 -64.82 -0.22 1.53 16 19 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 20 C -0.13 -1.62 6.47 -23.92 -0.15 -1.77 16 21 C -0.12 -1.22 6.37 -25.01 -0.16 -1.38 16 22 C -0.13 -1.04 5.76 -25.59 -0.15 -1.19 16 23 C -0.09 -0.83 3.26 -88.01 -0.29 -1.11 16 24 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 25 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.42 5.92 -51.93 -0.31 0.11 16 28 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 32 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 33 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.09 1.78 7.83 -51.91 -0.41 1.38 16 35 H 0.28 8.94 7.12 -40.82 -0.29 8.65 16 36 H 0.07 1.15 7.64 -51.93 -0.40 0.75 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.06 0.72 7.36 -51.93 -0.38 0.34 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.58 4.76 -51.93 -0.25 0.34 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -34.05 330.37 -8.63 -42.68 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.61 Total: -0.67 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -0.20 Total: -13.26 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.31 Total: -36.53 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.11 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.11 Total: -5.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.05 -8.63 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336317659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.406 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds