Wall clock time and date at job start Tue Mar 31 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 111.00895 * 2 1 4 4 C 1.56136 * 111.38402 * 235.69577 * 2 1 3 5 5 N 1.49290 * 106.55976 * 265.88814 * 4 2 1 6 6 C 1.34771 * 127.10744 * 188.53300 * 5 4 2 7 7 O 1.21284 * 120.00353 * 179.68539 * 6 5 4 8 8 C 1.50703 * 119.99952 * 359.67919 * 6 5 4 9 9 S 1.80990 * 109.47384 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00278 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99888 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00452 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00292 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99660 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99524 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99704 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99697 * 14 12 10 18 18 C 1.42708 * 105.79062 * 8.26748 * 5 4 2 19 19 H 1.08994 * 108.16695 * 76.11779 * 18 5 4 20 20 C 1.50521 * 128.15901 * 208.53619 * 18 5 4 21 21 C 1.56288 * 101.75369 * 161.32681 * 20 18 5 22 22 C 1.55692 * 105.93508 * 335.73799 * 21 20 18 23 23 C 1.51231 * 104.60896 * 352.75411 * 22 21 20 24 24 H 1.08994 * 111.07077 * 276.11243 * 23 22 21 25 25 H 1.09006 * 109.47008 * 295.73788 * 1 2 3 26 26 H 1.09000 * 109.47085 * 55.73343 * 1 2 3 27 27 H 1.08997 * 109.47309 * 175.74346 * 1 2 3 28 28 H 1.08994 * 109.47281 * 184.26444 * 3 2 1 29 29 H 1.09004 * 109.47179 * 304.26410 * 3 2 1 30 30 H 1.09004 * 109.47164 * 64.26389 * 3 2 1 31 31 H 1.09000 * 110.13250 * 146.54953 * 4 2 1 32 32 H 1.09003 * 109.91611 * 25.10878 * 4 2 1 33 33 H 1.09001 * 109.47050 * 59.99941 * 8 6 5 34 34 H 1.08999 * 109.47014 * 300.00996 * 8 6 5 35 35 H 0.96997 * 119.99773 * 180.02562 * 13 12 10 36 36 H 1.09002 * 110.97345 * 279.43893 * 20 18 5 37 37 H 1.08993 * 110.97273 * 43.21002 * 20 18 5 38 38 H 1.08996 * 110.16163 * 94.85524 * 21 20 18 39 39 H 1.09000 * 110.15629 * 216.62269 * 21 20 18 40 40 H 1.09004 * 110.40872 * 111.53509 * 22 21 20 41 41 H 1.08994 * 110.41181 * 233.85154 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0786 1.4283 0.0000 4 6 2.0994 -0.8194 -1.2010 5 7 2.3500 -2.2006 -0.6930 6 6 2.9859 -3.2003 -1.3353 7 8 3.1234 -4.2775 -0.7953 8 6 3.5262 -2.9797 -2.7248 9 16 4.3183 -4.4973 -3.3122 10 6 4.8442 -3.9697 -4.9090 11 1 4.6385 -2.9624 -5.2398 12 6 5.5227 -4.8486 -5.7418 13 7 5.9160 -4.4543 -6.9345 14 14 5.8778 -6.5911 -5.1700 15 1 7.1902 -6.6266 -4.4759 16 1 5.9141 -7.4997 -6.3441 17 1 4.8115 -7.0325 -4.2354 18 6 1.7828 -2.2419 0.6159 19 1 0.7001 -2.3171 0.5148 20 6 2.2042 -3.0901 1.7858 21 6 1.5496 -2.3285 2.9833 22 6 1.3705 -0.8570 2.5075 23 6 2.0790 -0.7988 1.1726 24 1 3.1482 -0.6328 1.3034 25 1 -0.3633 0.4463 0.9258 26 1 -0.3633 0.5786 -0.8493 27 1 -0.3634 -1.0248 -0.0763 28 1 3.1655 1.4001 -0.0764 29 1 1.6687 1.9749 -0.8493 30 1 1.7923 1.9275 0.9258 31 1 3.0313 -0.3748 -1.5503 32 1 1.3706 -0.8457 -2.0112 33 1 4.2573 -2.1714 -2.7062 34 1 2.7083 -2.7143 -3.3947 35 1 6.3899 -5.0687 -7.5166 36 1 1.8034 -4.1001 1.6999 37 1 3.2897 -3.1097 1.8825 38 1 0.5806 -2.7665 3.2224 39 1 2.2040 -2.3647 3.8542 40 1 0.3129 -0.6225 2.3870 41 1 1.8332 -0.1695 3.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336317660.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:59 Heat of formation + Delta-G solvation = -34.307538 kcal Electronic energy + Delta-G solvation = -20731.131901 eV Core-core repulsion = 17737.011214 eV Total energy + Delta-G solvation = -2994.120687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30308 -38.26842 -35.49689 -33.77665 -32.42763 -29.86523 -28.22702 -27.73955 -26.99701 -26.26229 -25.57552 -21.81752 -21.06108 -19.07799 -18.62156 -17.52166 -16.83452 -16.25989 -15.53848 -15.25777 -14.96794 -14.26708 -14.20977 -13.99489 -13.89281 -13.64053 -13.07951 -12.85832 -12.76212 -12.64232 -12.17641 -12.06583 -11.94715 -11.67443 -11.52075 -11.34895 -11.24494 -10.99989 -10.78662 -10.60412 -10.59885 -10.55929 -10.29711 -9.83770 -9.40070 -8.99175 -8.48207 -8.43100 -6.90428 -6.27928 -3.99410 2.71299 2.98223 3.18012 3.34083 3.51706 3.58287 3.95920 4.18940 4.34367 4.44624 4.66105 4.73694 4.76523 4.81836 5.04612 5.11229 5.14398 5.19879 5.28001 5.29385 5.39602 5.43472 5.47774 5.50180 5.55662 5.62000 5.71337 5.74013 5.79863 5.81291 5.86064 5.93727 6.00935 6.04101 6.17010 6.21760 6.24298 6.55955 7.68935 7.95248 8.42614 8.51499 9.18432 10.81372 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.004183 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.805029 B = 6692.510203 C = 7417.592326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.136 4.136 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.547 3.453 7 O -0.514 6.514 8 C -0.118 4.118 9 S -0.142 6.142 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.881 5.881 14 Si 0.856 3.144 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.121 3.879 19 H 0.063 0.937 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.115 4.115 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.271 0.729 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 11.957 17.970 24.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.193 4.193 4 C -0.010 4.010 5 N -0.345 5.345 6 C 0.335 3.665 7 O -0.389 6.389 8 C -0.268 4.268 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.518 5.518 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.015 3.985 19 H 0.081 0.919 20 C -0.146 4.146 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.134 4.134 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.952 10.220 18.516 23.817 hybrid contribution 0.202 0.591 -0.810 1.023 sum -10.750 10.812 17.706 23.365 Atomic orbital electron populations 1.21880 0.93419 1.02346 1.02116 1.21181 0.95963 0.94958 0.94266 1.21764 1.01076 0.94369 1.02120 1.23003 1.00968 0.80701 0.96324 1.47646 1.58397 1.12499 1.15928 1.19983 0.76660 0.82733 0.87092 1.90700 1.56288 1.24131 1.67752 1.23246 1.03584 1.04969 0.95011 1.84768 1.73036 1.14224 1.19576 1.22314 1.42684 1.02963 0.98855 0.89424 1.24701 0.93829 0.98765 0.93935 1.69939 1.37435 1.36430 1.07956 0.86741 0.81185 0.84249 0.79721 1.19202 1.19930 1.15920 1.21271 0.97328 0.95906 0.83968 0.91920 1.21770 1.01449 0.98811 0.92526 1.22851 1.00799 0.94399 0.97754 1.21676 1.00810 0.96777 0.95522 1.22658 1.00825 0.95988 0.93970 0.89701 0.91927 0.92118 0.92034 0.92204 0.92209 0.92102 0.90489 0.90820 0.88724 0.88658 0.91953 0.90720 0.91030 0.91477 0.91394 0.91070 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 7.76 37.16 0.29 -0.77 16 2 C -0.06 -0.54 0.94 -153.27 -0.14 -0.69 16 3 C -0.14 -0.97 8.66 37.16 0.32 -0.65 16 4 C 0.11 1.25 5.90 -0.81 0.00 1.25 16 5 N -0.61 -8.95 3.22 -163.19 -0.52 -9.47 16 6 C 0.55 10.46 7.89 -10.99 -0.09 10.38 16 7 O -0.51 -11.57 15.59 5.55 0.09 -11.49 16 8 C -0.12 -2.39 5.46 36.01 0.20 -2.20 16 9 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 10 C -0.52 -15.20 10.04 30.94 0.31 -14.88 16 11 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 12 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 13 N -0.88 -26.78 13.97 55.49 0.78 -26.00 16 14 Si 0.86 22.02 27.74 -169.99 -4.71 17.31 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 18 C 0.12 1.51 2.79 -68.72 -0.19 1.32 16 19 H 0.06 0.76 5.91 -51.93 -0.31 0.45 16 20 C -0.11 -1.32 5.97 -26.20 -0.16 -1.47 16 21 C -0.12 -1.04 6.93 -23.53 -0.16 -1.20 16 22 C -0.11 -0.86 6.37 -26.19 -0.17 -1.02 16 23 C -0.12 -1.10 2.43 -89.50 -0.22 -1.32 16 24 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 25 H 0.06 0.40 6.90 -51.93 -0.36 0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.53 6.26 -51.93 -0.33 0.20 16 28 H 0.06 0.45 8.05 -51.93 -0.42 0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.84 7.82 -51.93 -0.41 0.43 16 32 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 33 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 34 H 0.10 1.83 8.14 -51.92 -0.42 1.40 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.49 6.23 -51.93 -0.32 0.17 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -33.21 331.62 -8.26 -41.47 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.78 Total: -2.61 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.11 Total: -8.51 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.25 Total: -35.48 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.21 -8.26 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336317660.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.159 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds