Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48505 * 109.47016 * 269.72259 * 3 2 1 5 5 H 1.48503 * 109.47213 * 29.72048 * 3 2 1 6 6 H 1.48498 * 109.47141 * 149.72419 * 3 2 1 7 7 C 1.38811 * 119.99414 * 179.72011 * 2 1 3 8 8 H 1.08001 * 120.00346 * 0.28264 * 7 2 1 9 9 N 1.36937 * 119.99762 * 180.27588 * 7 2 1 10 10 C 1.46503 * 120.00318 * 172.69204 * 9 7 2 11 11 H 1.08994 * 109.47109 * 182.15225 * 10 9 7 12 12 C 1.53002 * 109.46418 * 302.14994 * 10 9 7 13 13 O 1.42907 * 109.47073 * 294.99464 * 12 10 9 14 14 C 1.35900 * 116.99762 * 180.02562 * 13 12 10 15 15 C 1.38727 * 120.05785 * 359.73330 * 14 13 12 16 16 C 1.38149 * 119.94115 * 179.74423 * 15 14 13 17 17 C 1.38264 * 120.05730 * 0.50250 * 16 15 14 18 18 C 1.38259 * 120.10960 * 359.77245 * 17 16 15 19 19 C 1.38144 * 120.05733 * 359.97438 * 18 17 16 20 20 C 1.50699 * 109.47040 * 62.14440 * 10 9 7 21 21 C 1.38230 * 119.99760 * 213.25262 * 20 10 9 22 22 C 1.38238 * 119.99772 * 179.79096 * 21 20 10 23 23 C 1.38227 * 120.00174 * 0.44294 * 22 21 20 24 24 C 1.38240 * 120.00002 * 359.81192 * 23 22 21 25 25 C 1.38229 * 120.00089 * 33.53383 * 20 10 9 26 26 H 0.97009 * 119.99784 * 0.02562 * 1 2 3 27 27 H 0.97008 * 120.00226 * 352.68457 * 9 7 2 28 28 H 1.08993 * 109.47848 * 54.99964 * 12 10 9 29 29 H 1.09003 * 109.46803 * 175.00132 * 12 10 9 30 30 H 1.07998 * 120.02638 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.96904 * 180.27262 * 16 15 14 32 32 H 1.07996 * 119.94017 * 179.74914 * 17 16 15 33 33 H 1.08002 * 119.97068 * 179.97438 * 18 17 16 34 34 H 1.08009 * 120.02592 * 179.97438 * 19 18 17 35 35 H 1.08006 * 120.00329 * 359.97438 * 21 20 10 36 36 H 1.08005 * 119.99916 * 180.27494 * 22 21 20 37 37 H 1.07998 * 120.00479 * 179.83377 * 23 22 21 38 38 H 1.07993 * 120.00251 * 179.97438 * 24 23 22 39 39 H 1.08007 * 120.00266 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5036 2.0429 -1.4001 5 1 1.4448 2.6544 0.6941 6 1 3.5448 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1375 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1113 -2.4603 0.1791 11 1 5.1822 -2.2582 0.1961 12 6 3.6960 -3.1203 1.4955 13 8 4.1034 -2.2973 2.5904 14 6 3.8090 -2.7428 3.8401 15 6 3.1369 -3.9446 4.0089 16 6 2.8436 -4.3979 5.2805 17 6 3.2100 -3.6498 6.3841 18 6 3.8749 -2.4489 6.2182 19 6 4.1752 -1.9938 4.9489 20 6 3.7923 -3.3836 -0.9683 21 6 3.7474 -4.7500 -0.7640 22 6 3.4505 -5.5967 -1.8156 23 6 3.2077 -5.0777 -3.0735 24 6 3.2578 -3.7116 -3.2790 25 6 3.5505 -2.8646 -2.2264 26 1 -0.4850 0.8401 -0.0004 27 1 3.8651 -0.3693 -0.0954 28 1 2.6130 -3.2416 1.5154 29 1 4.1725 -4.0971 1.5783 30 1 2.8466 -4.5272 3.1471 31 1 2.3243 -5.3356 5.4126 32 1 2.9762 -4.0039 7.3771 33 1 4.1597 -1.8662 7.0818 34 1 4.6942 -1.0554 4.8200 35 1 3.9413 -5.1559 0.2180 36 1 3.4110 -6.6640 -1.6549 37 1 2.9784 -5.7393 -3.8957 38 1 3.0685 -3.3061 -4.2619 39 1 3.5896 -1.7973 -2.3870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341703211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = 34.984274 kcal Electronic energy + Delta-G solvation = -21574.165593 eV Core-core repulsion = 18447.605673 eV Total energy + Delta-G solvation = -3126.559920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.82816 -38.91277 -37.10140 -35.15196 -32.16968 -30.84081 -30.58181 -29.92052 -29.63028 -27.50638 -24.54147 -22.68445 -22.25466 -21.98273 -21.34139 -19.55891 -18.19996 -17.79111 -16.46198 -15.76531 -15.54918 -15.36856 -14.80223 -14.41688 -14.24841 -14.10661 -13.92260 -13.24810 -13.05589 -12.89540 -12.75983 -12.61523 -12.24846 -12.15656 -11.45794 -11.38559 -11.12594 -10.95538 -10.73623 -10.64672 -10.50845 -10.23434 -10.03971 -9.58208 -9.00817 -8.79913 -8.44919 -8.19432 -7.86055 -7.35083 -5.78913 -3.17438 1.54725 1.70876 1.80966 1.89955 3.36681 3.43084 3.45689 3.64106 4.02887 4.26761 4.58214 5.01969 5.07918 5.08584 5.27930 5.29801 5.34948 5.40498 5.51729 5.55118 5.57762 5.65783 5.73325 5.80289 5.84644 5.90234 6.08857 6.12500 6.20704 6.39364 6.46748 6.53382 6.56088 6.64478 6.70735 6.87358 6.98072 7.03918 7.19338 7.48452 7.87335 7.94934 8.38707 9.15179 9.87507 10.05734 11.38682 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011369 B = 0.006599 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.299278 B = 4241.891601 C = 6054.362659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.734 5.734 10 C 0.218 3.782 11 H 0.079 0.921 12 C 0.052 3.948 13 O -0.297 6.297 14 C 0.148 3.852 15 C -0.211 4.211 16 C -0.081 4.081 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.160 4.160 20 C -0.075 4.075 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.073 4.073 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 -9.809 4.097 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.184 4.184 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.374 5.374 10 C 0.107 3.893 11 H 0.097 0.903 12 C -0.025 4.025 13 O -0.209 6.209 14 C 0.101 3.899 15 C -0.230 4.230 16 C -0.099 4.099 17 C -0.191 4.191 18 C -0.101 4.101 19 C -0.178 4.178 20 C -0.078 4.078 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.199 0.801 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.508 -9.649 4.043 14.137 hybrid contribution 0.092 0.979 -0.060 0.985 sum 9.600 -8.669 3.984 13.535 Atomic orbital electron populations 1.69707 1.05173 1.25843 1.56882 1.24662 0.95130 0.97148 1.01503 0.86631 0.79704 0.85119 0.77660 1.21183 1.21842 1.19812 1.18886 0.80255 0.94530 1.43487 0.89307 1.42630 1.04207 1.02784 1.87780 1.18947 0.95651 0.86618 0.88107 0.90333 1.23551 1.01028 0.92062 0.85833 1.86094 1.74916 1.48296 1.11637 1.19143 0.93098 0.92100 0.85562 1.21306 1.05182 0.97912 0.98591 1.20898 0.97877 0.99124 0.92021 1.20935 1.03244 0.96474 0.98461 1.20883 0.97309 0.95853 0.96102 1.20442 1.05742 1.01168 0.90491 1.20480 0.98146 0.93419 0.95744 1.21090 1.01716 0.93306 0.98682 1.20967 1.01417 0.99023 0.93310 1.21006 1.01713 0.95347 0.96926 1.21128 1.00786 0.93537 0.98995 1.20996 0.96109 1.00327 0.91654 0.93068 0.80105 0.90741 0.93133 0.85570 0.86261 0.86472 0.85905 0.85511 0.86592 0.86908 0.86992 0.86685 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 21.83 27.67 -169.99 -4.70 17.13 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.45 6.63 56.52 0.37 -6.08 16 7 C -0.24 -6.50 8.73 -15.06 -0.13 -6.63 16 8 H 0.09 2.62 7.51 -52.49 -0.39 2.22 16 9 N -0.73 -16.50 4.14 -54.55 -0.23 -16.73 16 10 C 0.22 4.06 3.37 -69.08 -0.23 3.83 16 11 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 12 C 0.05 0.94 3.45 37.16 0.13 1.07 16 13 O -0.30 -5.74 10.08 -19.43 -0.20 -5.94 16 14 C 0.15 2.59 6.69 -39.22 -0.26 2.33 16 15 C -0.21 -3.33 9.04 -39.43 -0.36 -3.69 16 16 C -0.08 -1.10 10.04 -39.60 -0.40 -1.50 16 17 C -0.17 -2.21 10.04 -39.56 -0.40 -2.61 16 18 C -0.08 -1.11 10.04 -39.61 -0.40 -1.51 16 19 C -0.16 -2.52 9.99 -39.43 -0.39 -2.91 16 20 C -0.08 -1.34 5.09 -104.63 -0.53 -1.87 16 21 C -0.13 -2.02 9.13 -39.58 -0.36 -2.38 16 22 C -0.13 -1.85 10.05 -39.59 -0.40 -2.25 16 23 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 24 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 25 C -0.07 -1.32 8.92 -39.59 -0.35 -1.67 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 27 H 0.37 8.16 6.00 -40.82 -0.24 7.92 16 28 H 0.07 1.53 6.65 -51.93 -0.35 1.18 16 29 H 0.05 0.76 5.76 -51.93 -0.30 0.46 16 30 H 0.13 1.88 6.30 -52.49 -0.33 1.55 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.12 1.58 5.97 -52.48 -0.31 1.27 16 36 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.45 7.51 -52.48 -0.39 2.06 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -31.51 325.43 -9.29 -40.80 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.87 Total: 12.17 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.98 Total: -24.27 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.55 Total: -44.79 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.20 Total: -5.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.70 Total: 17.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.51 -9.29 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341703211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.784 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds