Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00170 * 2 1 4 4 H 1.48496 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47139 * 300.00076 * 3 2 1 6 6 H 1.48501 * 109.46770 * 59.99690 * 3 2 1 7 7 C 1.38817 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99995 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46652 * 325.00032 * 10 9 7 12 12 C 1.53000 * 109.47475 * 204.99860 * 10 9 7 13 13 O 1.42900 * 109.46638 * 294.99934 * 12 10 9 14 14 C 1.35909 * 116.99452 * 179.97438 * 13 12 10 15 15 C 1.38731 * 120.05633 * 359.72793 * 14 13 12 16 16 C 1.38146 * 119.94124 * 179.74132 * 15 14 13 17 17 C 1.38262 * 120.05733 * 0.50693 * 16 15 14 18 18 C 1.38268 * 120.10888 * 359.76954 * 17 16 15 19 19 C 1.38144 * 120.05935 * 359.97249 * 18 17 16 20 20 C 1.50702 * 109.47390 * 84.99358 * 10 9 7 21 21 C 1.38234 * 120.00272 * 220.00029 * 20 10 9 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 10 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99464 * 40.02745 * 20 10 9 26 26 H 0.97008 * 119.99977 * 0.02562 * 1 2 3 27 27 H 0.97004 * 120.00433 * 359.97438 * 9 7 2 28 28 H 1.09008 * 109.46713 * 54.99537 * 12 10 9 29 29 H 1.08994 * 109.47219 * 174.99337 * 12 10 9 30 30 H 1.07997 * 120.03020 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.96837 * 180.27824 * 16 15 14 32 32 H 1.07994 * 119.94869 * 179.74702 * 17 16 15 33 33 H 1.08008 * 119.96884 * 179.97438 * 18 17 16 34 34 H 1.07993 * 120.02972 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.99769 * 0.02562 * 21 20 10 36 36 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 38 38 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00481 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9691 -3.5502 -0.5903 12 6 1.1813 -4.7519 -0.6123 13 8 0.0433 -4.9723 0.2234 14 6 -0.8434 -5.9204 -0.1791 15 6 -0.6255 -6.6200 -1.3572 16 6 -1.5255 -7.5869 -1.7613 17 6 -2.6481 -7.8504 -0.9984 18 6 -2.8704 -7.1504 0.1732 19 6 -1.9707 -6.1862 0.5845 20 6 2.4155 -4.0305 1.4139 21 6 3.6527 -4.5806 1.6921 22 6 3.9807 -4.9229 2.9906 23 6 3.0717 -4.7147 4.0110 24 6 1.8349 -4.1636 3.7329 25 6 1.5058 -3.8237 2.4340 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 -0.0016 28 1 0.8497 -4.4413 -1.6033 29 1 1.7563 -5.6742 -0.6941 30 1 0.2489 -6.4115 -1.9558 31 1 -1.3540 -8.1350 -2.6760 32 1 -3.3526 -8.6038 -1.3181 33 1 -3.7483 -7.3578 0.7672 34 1 -2.1450 -5.6396 1.4994 35 1 4.3634 -4.7422 0.8951 36 1 4.9475 -5.3524 3.2081 37 1 3.3263 -4.9862 5.0248 38 1 1.1244 -4.0012 4.5300 39 1 0.5391 -3.3939 2.2167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341703213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = 26.832512 kcal Electronic energy + Delta-G solvation = -21554.993008 eV Core-core repulsion = 18428.079601 eV Total energy + Delta-G solvation = -3126.913407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92739 -38.71195 -37.15846 -34.92488 -32.19363 -30.89576 -30.31467 -29.67817 -29.49241 -27.68950 -24.09999 -22.96471 -22.35070 -21.83458 -21.67387 -19.71032 -18.10085 -17.20130 -16.40644 -15.91348 -15.58900 -15.42131 -14.67070 -14.53743 -14.33812 -14.06933 -13.61106 -13.28017 -13.11673 -12.99142 -12.78188 -12.29625 -12.19321 -11.96904 -11.52043 -11.28664 -11.00018 -10.91076 -10.84388 -10.60710 -10.42942 -10.31996 -10.05732 -9.71094 -9.00907 -8.89196 -8.31139 -8.07839 -7.97100 -7.04450 -5.79877 -3.10367 1.45484 1.60973 1.96412 2.04878 3.41516 3.48132 3.49890 3.55503 3.93364 4.41238 4.55795 4.93479 5.00288 5.20516 5.26538 5.33627 5.39493 5.45108 5.50046 5.51018 5.58089 5.67208 5.69523 5.75871 5.92891 6.07739 6.13055 6.18374 6.26367 6.34944 6.46416 6.53941 6.60132 6.62382 6.71875 6.93471 7.00883 7.13645 7.41267 7.63655 7.68035 7.76077 8.36736 9.49831 10.01509 10.38785 11.41948 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.005636 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.250956 B = 4966.669731 C = 6322.565212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.212 3.788 11 H 0.076 0.924 12 C 0.060 3.940 13 O -0.295 6.295 14 C 0.144 3.856 15 C -0.214 4.214 16 C -0.082 4.082 17 C -0.171 4.171 18 C -0.083 4.083 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.135 4.135 24 C -0.132 4.132 25 C -0.065 4.065 26 H 0.255 0.745 27 H 0.390 0.610 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -15.650 0.780 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.352 5.352 10 C 0.101 3.899 11 H 0.094 0.906 12 C -0.016 4.016 13 O -0.207 6.207 14 C 0.097 3.903 15 C -0.233 4.233 16 C -0.101 4.101 17 C -0.190 4.190 18 C -0.101 4.101 19 C -0.174 4.174 20 C -0.085 4.085 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.083 4.083 26 H 0.065 0.935 27 H 0.225 0.775 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.004 -15.339 0.917 15.367 hybrid contribution 0.305 0.942 -0.067 0.993 sum 0.309 -14.397 0.850 14.425 Atomic orbital electron populations 1.69682 1.05091 1.25642 1.57149 1.24731 0.95460 0.97648 1.02566 0.86147 0.78874 0.84160 0.77183 1.20511 1.21843 1.21832 1.19255 0.91024 0.83842 1.43179 0.91063 1.42405 1.06038 0.99003 1.87742 1.19374 0.93944 0.85815 0.90724 0.90607 1.23295 0.85590 0.98561 0.94141 1.86217 1.32881 1.52613 1.49022 1.19157 0.90094 0.88439 0.92578 1.21297 1.02732 1.01017 0.98208 1.20893 0.93834 0.96415 0.98918 1.20959 0.98911 1.02429 0.96660 1.20919 0.98182 0.94832 0.96152 1.20484 0.94000 1.01259 1.01642 1.21028 0.93353 0.95625 0.98517 1.20984 0.96677 1.00466 0.96333 1.20922 0.98962 1.01987 0.93313 1.20943 0.94643 1.01418 0.98369 1.21114 0.96684 1.00336 0.96897 1.20993 0.99830 0.95955 0.91554 0.93479 0.77457 0.91353 0.92328 0.85579 0.86269 0.86435 0.85800 0.85263 0.87011 0.87223 0.87301 0.87064 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.56 9.92 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.26 4.34 -54.55 -0.24 -17.50 16 10 C 0.21 4.12 2.93 -69.08 -0.20 3.92 16 11 H 0.08 1.42 7.94 -51.93 -0.41 1.00 16 12 C 0.06 0.99 4.47 37.16 0.17 1.16 16 13 O -0.29 -5.23 8.30 -19.45 -0.16 -5.39 16 14 C 0.14 2.29 6.69 -39.22 -0.26 2.03 16 15 C -0.21 -2.98 9.04 -39.43 -0.36 -3.33 16 16 C -0.08 -1.00 10.04 -39.61 -0.40 -1.39 16 17 C -0.17 -1.98 10.04 -39.56 -0.40 -2.38 16 18 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 19 C -0.16 -2.26 9.99 -39.43 -0.39 -2.66 16 20 C -0.08 -1.56 4.80 -104.62 -0.50 -2.06 16 21 C -0.13 -2.11 9.67 -39.59 -0.38 -2.49 16 22 C -0.13 -2.07 10.05 -39.59 -0.40 -2.47 16 23 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 25 C -0.07 -1.28 8.32 -39.58 -0.33 -1.61 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.39 10.27 7.58 -40.82 -0.31 9.96 16 28 H 0.07 1.12 7.65 -51.92 -0.40 0.72 16 29 H 0.06 0.82 7.68 -51.93 -0.40 0.43 16 30 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.11 1.62 8.04 -52.49 -0.42 1.20 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.13 2.70 7.47 -52.49 -0.39 2.31 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -30.54 333.36 -9.74 -40.28 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.17 Total: 12.21 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -4.89 Total: -24.92 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.49 Total: -44.47 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.16 Total: -5.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.54 -9.74 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341703213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.111 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds