Wall clock time and date at job start Tue Mar 31 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36228 * 117.00234 * 2 1 4 4 C 1.38668 * 122.58362 * 359.72043 * 3 2 1 5 5 C 1.33430 * 114.88174 * 179.75748 * 4 3 2 6 6 S 1.75870 * 109.66070 * 0.47396 * 5 4 3 7 7 C 1.33628 * 122.58789 * 179.97438 * 3 2 1 8 8 C 1.50701 * 125.19374 * 359.97438 * 7 3 2 9 9 N 1.46897 * 109.46726 * 90.00338 * 8 7 3 10 10 C 1.46907 * 110.99751 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46937 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47427 * 300.00021 * 11 10 9 13 13 C 1.53004 * 109.46912 * 59.99815 * 11 10 9 14 14 C 1.53001 * 109.46907 * 179.97438 * 11 10 9 15 15 C 1.50696 * 109.46836 * 180.02562 * 14 11 10 16 16 H 1.08001 * 120.00587 * 0.02562 * 15 14 11 17 17 C 1.37886 * 119.99869 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99939 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47304 * 89.99580 * 19 17 15 21 21 H 1.48498 * 109.46706 * 209.99894 * 19 17 15 22 22 H 1.48496 * 109.47180 * 329.99603 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00062 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99566 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.07997 * 122.56213 * 359.96506 * 4 3 2 27 27 H 1.08004 * 125.17312 * 180.21994 * 5 4 3 28 28 H 1.08998 * 109.47229 * 210.00182 * 8 7 3 29 29 H 1.09002 * 109.47386 * 330.00163 * 8 7 3 30 30 H 1.00901 * 111.00289 * 303.95069 * 9 8 7 31 31 H 1.09002 * 109.46882 * 299.99713 * 10 9 8 32 32 H 1.08996 * 109.47278 * 59.99582 * 10 9 8 33 33 H 1.09003 * 109.47211 * 59.99662 * 12 11 10 34 34 H 1.08998 * 109.47314 * 180.02562 * 12 11 10 35 35 H 1.09005 * 109.46534 * 300.00033 * 12 11 10 36 36 H 1.09002 * 109.47267 * 59.99866 * 13 11 10 37 37 H 1.08998 * 109.46739 * 179.97438 * 13 11 10 38 38 H 1.08992 * 109.47489 * 299.99644 * 13 11 10 39 39 H 1.09002 * 109.47216 * 300.00100 * 14 11 10 40 40 H 1.08996 * 109.46974 * 59.99987 * 14 11 10 41 41 H 0.97003 * 119.99933 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0476 1.2138 0.0000 4 6 1.3456 2.4096 -0.0057 5 6 2.1052 3.5066 0.0003 6 16 3.8037 3.0501 0.0002 7 6 3.3775 1.3438 0.0005 8 6 4.3618 0.2027 0.0017 9 7 4.6822 -0.1689 -1.3829 10 6 5.6410 -1.2813 -1.4210 11 6 5.9490 -1.6395 -2.8763 12 6 4.6575 -2.0548 -3.5837 13 6 6.5500 -0.4236 -3.5844 14 6 6.9480 -2.7977 -2.9159 15 6 7.2518 -3.1500 -4.3493 16 1 6.7800 -2.6024 -5.1518 17 6 8.1323 -4.1716 -4.6363 18 7 8.7072 -4.8381 -3.6592 19 14 8.5095 -4.6078 -6.4131 20 1 9.6700 -3.8095 -6.8832 21 1 8.8318 -6.0542 -6.5098 22 1 7.3265 -4.3067 -7.2586 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2664 2.4501 -0.0110 27 1 1.7336 4.5207 0.0006 28 1 5.2728 0.5091 0.5157 29 1 3.9250 -0.6534 0.5158 30 1 3.8456 -0.3952 -1.8995 31 1 6.5609 -0.9855 -0.9167 32 1 5.2126 -2.1476 -0.9168 33 1 3.9461 -1.2294 -3.5554 34 1 4.8771 -2.3104 -4.6203 35 1 4.2294 -2.9210 -3.0791 36 1 7.4701 -0.1277 -3.0805 37 1 6.7699 -0.6789 -4.6211 38 1 5.8387 0.4017 -3.5562 39 1 7.8680 -2.5013 -2.4121 40 1 6.5202 -3.6639 -2.4113 41 1 9.3263 -5.5570 -3.8612 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342309066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:25 Heat of formation + Delta-G solvation = -17.584141 kcal Electronic energy + Delta-G solvation = -20116.047045 eV Core-core repulsion = 17122.651539 eV Total energy + Delta-G solvation = -2993.395506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94822 -37.58671 -36.01293 -34.37433 -32.22835 -30.16530 -27.51668 -26.80390 -26.25164 -25.65110 -24.36187 -22.89394 -21.91036 -19.66052 -18.13489 -17.35128 -16.71178 -16.17483 -15.92278 -15.36230 -15.06079 -14.71333 -14.14636 -14.00116 -13.70411 -13.27128 -12.97788 -12.68992 -12.50842 -12.27926 -12.02143 -11.93322 -11.55082 -11.39041 -11.15654 -10.94508 -10.87448 -10.77825 -10.71203 -10.42665 -10.19891 -10.07089 -9.61147 -9.00858 -8.81328 -8.70228 -8.27068 -8.12087 -7.91601 -5.91693 -3.91433 0.85616 1.51008 1.82845 2.56213 3.36647 3.42927 3.45954 3.47451 4.48926 4.53813 4.71278 4.93711 4.94727 4.97783 5.19671 5.31089 5.44130 5.53466 5.56558 5.74350 5.77835 5.84676 5.89470 6.06576 6.25661 6.33932 6.41981 6.59538 6.74524 6.86822 6.90158 7.16085 7.27996 7.30397 7.33082 7.47443 7.74917 7.78983 7.92403 8.09131 8.53983 9.14015 9.71020 11.20059 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.003351 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.138349 B = 8352.655278 C = 8722.287414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.094 3.906 4 C -0.189 4.189 5 C -0.202 4.202 6 S 0.155 5.845 7 C -0.214 4.214 8 C 0.138 3.862 9 N -0.680 5.680 10 C 0.070 3.930 11 C -0.057 4.057 12 C -0.128 4.128 13 C -0.116 4.116 14 C 0.034 3.966 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.098 0.902 26 H 0.141 0.859 27 H 0.166 0.834 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.342 0.658 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 15.234 9.452 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C 0.038 3.962 4 C -0.222 4.222 5 C -0.338 4.338 6 S 0.418 5.582 7 C -0.332 4.332 8 C 0.007 3.993 9 N -0.313 5.313 10 C -0.059 4.059 11 C -0.058 4.058 12 C -0.186 4.186 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.129 16.181 9.422 23.457 hybrid contribution -1.951 -1.686 -0.674 2.665 sum -16.080 14.495 8.749 23.350 Atomic orbital electron populations 1.23006 0.78732 1.03787 1.00913 1.86179 1.20811 1.25153 1.89805 1.17672 0.91039 0.85105 1.02337 1.20160 1.01340 0.91546 1.09113 1.25457 0.97271 1.02480 1.08610 1.84305 1.04589 0.97162 1.72174 1.23563 0.94925 0.98750 1.15954 1.20126 0.95123 0.92302 0.91730 1.60681 1.17643 1.41876 1.11095 1.22123 0.94980 0.90189 0.98600 1.20619 0.96423 0.97377 0.91366 1.21762 0.96297 0.98661 1.01854 1.21597 0.99049 0.96283 1.00380 1.19123 0.92880 0.91318 0.97050 1.21251 1.24676 1.16018 0.92430 0.92303 1.25017 0.96338 0.96529 0.96743 1.69968 1.30062 1.22695 1.31088 0.86667 0.78630 0.77447 0.85697 1.20796 1.21428 1.19959 0.93108 0.92927 0.88381 0.84124 0.81655 0.90484 0.93514 0.83912 0.91566 0.95777 0.94824 0.91791 0.94117 0.94195 0.92766 0.93872 0.96682 0.96908 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.92 101.05 1.00 1.25 16 2 O -0.31 -3.75 10.16 -20.47 -0.21 -3.96 16 3 C 0.09 1.16 6.59 -41.04 -0.27 0.89 16 4 C -0.19 -1.88 9.16 -41.10 -0.38 -2.25 16 5 C -0.20 -1.85 11.22 29.05 0.33 -1.53 16 6 S 0.15 1.68 23.32 -107.50 -2.51 -0.82 16 7 C -0.21 -2.78 6.03 -35.92 -0.22 -3.00 16 8 C 0.14 1.95 6.02 -4.98 -0.03 1.92 16 9 N -0.68 -10.84 5.70 -115.05 -0.66 -11.50 16 10 C 0.07 1.27 4.65 -3.82 -0.02 1.25 16 11 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 12 C -0.13 -2.50 7.89 37.16 0.29 -2.21 16 13 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 14 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 15 C -0.51 -14.07 7.65 -34.44 -0.26 -14.33 16 16 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 17 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H 0.05 0.33 7.85 -51.93 -0.41 -0.08 16 24 H 0.05 0.37 7.83 -51.93 -0.41 -0.04 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.14 1.06 6.91 -52.49 -0.36 0.70 16 27 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.68 7.96 -51.93 -0.41 0.27 16 30 H 0.34 5.51 6.76 -39.29 -0.27 5.25 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 34 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 1.15 6.61 -51.93 -0.34 0.81 16 38 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -30.79 342.54 -8.57 -39.36 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.52 Total: 0.48 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 0.44 Total: -19.11 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.08 Total: -37.97 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.21 Total: -3.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.51 Total: -0.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.79 -8.57 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342309066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.777 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds