Wall clock time and date at job start Tue Mar 31 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99638 * 2 1 4 4 H 1.48500 * 109.47050 * 269.99672 * 3 2 1 5 5 H 1.48497 * 109.47482 * 29.99855 * 3 2 1 6 6 H 1.48500 * 109.46975 * 150.00057 * 3 2 1 7 7 C 1.39942 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00433 * 197.85157 * 7 2 1 9 9 C 1.41398 * 119.99768 * 17.85197 * 7 2 1 10 10 C 1.40718 * 120.24267 * 204.38211 * 9 7 2 11 11 C 1.37613 * 119.74554 * 180.02562 * 10 9 7 12 12 C 1.38641 * 120.24941 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.74995 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47224 * 90.00025 * 13 12 11 15 15 C 1.39674 * 120.00188 * 179.97438 * 14 13 12 16 16 C 1.38939 * 120.07386 * 359.72487 * 15 14 13 17 17 C 1.38080 * 119.92537 * 179.74316 * 16 15 14 18 18 C 1.38317 * 120.07307 * 0.55216 * 17 16 15 19 19 C 1.38257 * 120.14918 * 359.70040 * 18 17 16 20 20 C 1.50705 * 119.96441 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47123 * 269.97910 * 20 19 18 22 22 C 1.38130 * 120.07537 * 0.02562 * 19 18 17 23 23 C 1.38632 * 120.49878 * 0.25038 * 12 11 10 24 24 C 1.37618 * 120.24869 * 359.44537 * 23 12 11 25 25 H 0.96992 * 119.99992 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.13008 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.87841 * 179.97438 * 11 10 9 28 28 H 1.08997 * 109.47403 * 329.99888 * 13 12 11 29 29 H 1.09000 * 109.46984 * 210.00056 * 13 12 11 30 30 H 0.96995 * 120.00058 * 359.97438 * 14 13 12 31 31 H 1.08003 * 120.03514 * 0.02562 * 16 15 14 32 32 H 1.07999 * 119.96391 * 180.27431 * 17 16 15 33 33 H 1.08001 * 119.92239 * 179.71786 * 18 17 16 34 34 H 1.08997 * 109.46487 * 29.97621 * 20 19 18 35 35 H 1.09001 * 109.47142 * 149.97878 * 20 19 18 36 36 H 0.96698 * 113.99911 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.03361 * 180.02562 * 22 19 18 38 38 H 1.07998 * 119.87491 * 179.70909 * 23 12 11 39 39 H 1.08006 * 120.12826 * 180.27507 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3522 -2.4071 -0.3743 10 6 1.8260 -3.6498 0.0855 11 6 1.1801 -4.8067 -0.2862 12 6 0.0669 -4.7511 -1.1107 13 6 -0.6315 -6.0251 -1.5111 14 7 -1.6746 -6.3389 -0.5315 15 6 -2.4622 -7.4812 -0.6916 16 6 -2.2616 -8.3179 -1.7825 17 6 -3.0385 -9.4492 -1.9350 18 6 -4.0231 -9.7437 -1.0094 19 6 -4.2289 -8.9105 0.0745 20 6 -5.3026 -9.2357 1.0808 21 8 -6.5308 -8.6241 0.6815 22 6 -3.4516 -7.7802 0.2361 23 6 -0.4052 -3.5329 -1.5742 24 6 0.2211 -2.3628 -1.2104 25 1 -0.4850 0.8400 -0.0004 26 1 2.6932 -3.6955 0.7275 27 1 1.5421 -5.7617 0.0651 28 1 0.0913 -6.8402 -1.5459 29 1 -1.0833 -5.8979 -2.4949 30 1 -1.8182 -5.7534 0.2284 31 1 -1.4958 -8.0861 -2.5080 32 1 -2.8801 -10.1024 -2.7804 33 1 -4.6324 -10.6268 -1.1335 34 1 -5.4352 -10.3163 1.1340 35 1 -5.0096 -8.8569 2.0600 36 1 -7.2680 -8.7920 1.2843 37 1 -3.6126 -7.1299 1.0833 38 1 -1.2704 -3.5017 -2.2199 39 1 -0.1510 -1.4144 -1.5690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342415574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:55 Heat of formation + Delta-G solvation = -14.745644 kcal Electronic energy + Delta-G solvation = -20312.420542 eV Core-core repulsion = 17183.704171 eV Total energy + Delta-G solvation = -3128.716371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.43376 -37.85588 -36.84246 -35.20125 -33.66794 -31.36985 -30.92943 -29.40842 -28.72269 -26.35092 -25.90565 -23.59705 -22.21779 -21.09726 -20.60177 -19.82154 -17.56374 -17.40196 -17.02161 -16.14708 -15.45206 -15.36485 -14.64046 -14.30339 -14.21235 -14.03437 -13.56826 -13.36354 -13.17445 -13.07860 -12.55580 -12.24626 -12.05170 -11.87371 -11.68800 -11.33221 -11.18586 -11.06147 -10.77343 -10.65501 -10.44766 -10.20449 -9.80870 -9.68103 -9.47150 -9.23997 -8.71260 -7.58676 -7.46752 -7.06752 -6.87623 -4.47581 1.49687 1.82433 2.58273 2.97115 3.01061 3.04521 3.06818 3.84504 3.88059 3.99541 4.48059 4.56833 4.92702 4.96317 5.21709 5.27361 5.39404 5.55243 5.59093 5.70134 5.75964 5.84440 6.00345 6.14169 6.18267 6.25318 6.32303 6.53689 6.66766 6.79155 6.85491 6.96838 7.05829 7.17135 7.25469 7.46889 7.50137 7.67845 7.76632 7.94677 8.00310 8.14808 8.19599 8.52993 8.77903 8.85659 10.06427 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.002885 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.205748 B = 9704.138825 C =10239.736810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.244 4.244 13 C 0.189 3.811 14 N -0.735 5.735 15 C 0.224 3.776 16 C -0.198 4.198 17 C -0.075 4.075 18 C -0.174 4.174 19 C -0.049 4.049 20 C 0.118 3.882 21 O -0.566 6.566 22 C -0.184 4.184 23 C -0.081 4.081 24 C -0.169 4.169 25 H 0.282 0.718 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.400 0.600 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.376 0.624 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -12.997 0.309 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.250 4.250 11 C -0.089 4.089 12 C -0.246 4.246 13 C 0.066 3.934 14 N -0.361 5.361 15 C 0.117 3.883 16 C -0.221 4.221 17 C -0.093 4.093 18 C -0.195 4.195 19 C -0.050 4.050 20 C 0.041 3.959 21 O -0.371 6.371 22 C -0.207 4.207 23 C -0.100 4.100 24 C -0.189 4.189 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.235 0.765 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.223 0.777 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.881 -12.570 -0.325 14.334 hybrid contribution -0.039 0.854 0.832 1.193 sum -6.920 -11.716 0.507 13.616 Atomic orbital electron populations 1.69822 1.07651 1.29474 1.34255 1.25957 0.94755 1.01499 0.92133 0.86281 0.80500 0.80372 0.79434 1.19158 1.20225 1.18537 1.19667 0.98231 0.91274 1.39601 0.90258 1.17673 0.90890 0.92056 0.88032 1.20972 1.04002 0.92836 1.07176 1.20394 0.95169 0.96467 0.96833 1.18953 1.01943 0.92776 1.10894 1.19946 0.87885 0.94963 0.90595 1.45410 1.36789 1.24392 1.29525 1.17960 0.89888 0.87295 0.93119 1.20689 1.04491 0.97358 0.99595 1.20809 0.94581 0.95957 0.97982 1.20625 1.01218 1.01437 0.96212 1.19225 0.95138 0.94869 0.95771 1.20994 0.83413 0.96128 0.95387 1.86606 1.19859 1.76989 1.53693 1.20439 0.99341 0.99429 1.01500 1.20559 0.97948 0.92607 0.98909 1.21314 0.99547 0.96760 1.01234 0.90681 0.88929 0.89452 0.93251 0.93199 0.76453 0.86144 0.86451 0.86964 0.92981 0.92960 0.77707 0.86479 0.89444 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.19 29.60 -169.99 -5.03 13.15 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.12 3.01 5.58 -106.82 -0.60 2.42 16 10 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 12 C -0.24 -5.05 5.27 -104.33 -0.55 -5.60 16 13 C 0.19 3.26 5.03 -5.20 -0.03 3.23 16 14 N -0.73 -12.17 5.72 -59.81 -0.34 -12.51 16 15 C 0.22 3.51 6.65 -83.79 -0.56 2.95 16 16 C -0.20 -2.88 9.31 -39.38 -0.37 -3.24 16 17 C -0.07 -0.96 10.04 -39.61 -0.40 -1.36 16 18 C -0.17 -2.24 9.70 -39.55 -0.38 -2.62 16 19 C -0.05 -0.66 5.51 -104.65 -0.58 -1.24 16 20 C 0.12 1.24 7.17 36.01 0.26 1.50 16 21 O -0.57 -6.31 13.64 -35.23 -0.48 -6.79 16 22 C -0.18 -2.72 9.55 -39.38 -0.38 -3.10 16 23 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 24 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 25 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 26 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 29 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 30 H 0.40 6.79 8.48 -40.82 -0.35 6.44 16 31 H 0.12 1.65 6.74 -52.48 -0.35 1.30 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.38 2.15 9.12 45.56 0.42 2.57 16 37 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -28.25 334.04 -10.05 -38.30 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.35 Total: 14.12 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -5.49 Total: -32.07 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.27 Total: -31.76 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.48 Total: -6.79 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.25 -10.05 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342415574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.558 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds