Wall clock time and date at job start Tue Mar 31 2020 05:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86807 * 119.99588 * 2 1 4 4 H 1.48500 * 109.46775 * 269.99390 * 3 2 1 5 5 H 1.48500 * 109.47034 * 29.99489 * 3 2 1 6 6 H 1.48497 * 109.46842 * 149.99845 * 3 2 1 7 7 C 1.37872 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00405 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99573 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99828 * 90.40014 * 10 9 7 12 12 C 1.53000 * 109.47229 * 89.91689 * 11 10 9 13 13 C 1.53001 * 117.50123 * 243.31395 * 12 11 10 14 14 C 1.53003 * 117.49845 * 174.65658 * 12 11 10 15 15 C 1.34769 * 120.00053 * 270.40334 * 10 9 7 16 16 O 1.21290 * 120.00092 * 185.32627 * 15 10 9 17 17 C 1.50695 * 120.00221 * 5.32038 * 15 10 9 18 18 H 1.08997 * 109.39196 * 331.76739 * 17 15 10 19 19 C 1.52588 * 109.39144 * 212.06081 * 17 15 10 20 20 C 1.52582 * 110.72456 * 169.17825 * 19 17 15 21 21 C 1.53095 * 109.95860 * 70.67469 * 20 19 17 22 22 S 1.81744 * 108.84369 * 296.97716 * 21 20 19 23 23 C 1.53106 * 109.38912 * 91.56838 * 17 15 10 24 24 H 0.96995 * 120.00204 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47101 * 299.99978 * 9 7 2 26 26 H 1.08995 * 109.46869 * 60.00040 * 9 7 2 27 27 H 1.08998 * 109.47235 * 209.92358 * 11 10 9 28 28 H 1.09004 * 109.47202 * 329.91884 * 11 10 9 29 29 H 1.09001 * 115.54733 * 28.98842 * 12 11 10 30 30 H 1.08996 * 117.49508 * 0.02562 * 13 12 11 31 31 H 1.08998 * 117.49610 * 145.01814 * 13 12 11 32 32 H 1.09004 * 117.49354 * 214.98332 * 14 12 11 33 33 H 1.09001 * 117.49783 * 359.97438 * 14 12 11 34 34 H 1.08996 * 109.22430 * 289.49378 * 19 17 15 35 35 H 1.08997 * 109.22070 * 48.85733 * 19 17 15 36 36 H 1.09003 * 109.38849 * 310.52489 * 20 19 17 37 37 H 1.09001 * 109.31011 * 190.77641 * 20 19 17 38 38 H 1.09000 * 109.57507 * 177.16784 * 21 20 19 39 39 H 1.08999 * 109.57367 * 56.78544 * 21 20 19 40 40 H 1.08994 * 109.57395 * 302.97891 * 23 17 15 41 41 H 1.09000 * 109.57147 * 63.23895 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0022 11 6 4.2531 -3.2635 -1.2659 12 6 5.7005 -3.0206 -1.6982 13 6 5.9291 -2.2560 -3.0036 14 6 6.2006 -3.7611 -2.9402 15 6 4.2165 -3.2124 1.1698 16 8 4.7114 -4.3197 1.1737 17 6 3.8437 -2.5492 2.4706 18 1 3.9002 -1.4669 2.3543 19 6 4.8153 -2.9908 3.5612 20 6 4.6377 -2.1440 4.8179 21 6 3.3097 -2.4888 5.4970 22 16 1.9472 -2.0646 4.3715 23 6 2.4149 -2.9455 2.8521 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6802 -0.8888 26 1 3.8745 -0.6798 0.8911 27 1 4.0866 -4.3331 -1.1382 28 1 3.5766 -2.8792 -2.0293 29 1 6.4119 -2.8582 -0.8885 30 1 5.0484 -1.9257 -3.5541 31 1 6.7912 -1.5908 -3.0527 32 1 7.2412 -4.0855 -2.9477 33 1 5.4985 -4.4216 -3.4491 34 1 4.6304 -4.0371 3.8043 35 1 5.8369 -2.8827 3.1968 36 1 4.6420 -1.0883 4.5465 37 1 5.4588 -2.3439 5.5063 38 1 3.2123 -1.9173 6.4200 39 1 3.2800 -3.5552 5.7208 40 1 1.7329 -2.6723 2.0469 41 1 2.3673 -4.0211 3.0219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354916831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:32 Heat of formation + Delta-G solvation = -22.703095 kcal Electronic energy + Delta-G solvation = -21224.487512 eV Core-core repulsion = 18230.870032 eV Total energy + Delta-G solvation = -2993.617481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69442 -37.29608 -35.86081 -34.85574 -32.47172 -31.44340 -28.47517 -26.98139 -26.57118 -23.36465 -22.56247 -22.15009 -21.12539 -20.20975 -18.26175 -17.13490 -16.78218 -16.13602 -15.72490 -15.11708 -14.74604 -14.46591 -14.10019 -14.03575 -13.52348 -13.23738 -13.12283 -12.60748 -12.47165 -12.39257 -12.05379 -11.94251 -11.49829 -11.34576 -11.19742 -11.14337 -11.04062 -10.82213 -10.63933 -10.43511 -10.33928 -10.13962 -9.67836 -9.60105 -9.46168 -8.93608 -8.69396 -7.83465 -7.29289 -6.22183 -4.24175 2.11818 2.80952 3.18673 3.26383 3.28037 3.31996 3.70247 4.07316 4.27156 4.84919 4.88233 5.00980 5.04703 5.08972 5.12520 5.20915 5.26812 5.32265 5.51859 5.65007 5.68647 5.76400 5.77692 5.88197 5.92904 6.04453 6.06349 6.12295 6.14071 6.16747 6.26959 6.36781 6.48212 6.50420 6.54632 6.72802 7.28509 7.42599 8.06702 8.37218 8.77500 8.85685 9.37207 10.89881 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011677 B = 0.008154 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.259077 B = 3432.984753 C = 5132.702019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.869 3.131 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.207 3.793 10 N -0.585 5.585 11 C 0.150 3.850 12 C -0.158 4.158 13 C -0.181 4.181 14 C -0.179 4.179 15 C 0.525 3.475 16 O -0.567 6.567 17 C -0.102 4.102 18 H 0.109 0.891 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.092 4.092 22 S -0.249 6.249 23 C -0.063 4.063 24 H 0.267 0.733 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 -3.184 3.610 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.122 4.122 3 Si 0.696 3.304 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.086 3.914 10 N -0.314 5.314 11 C 0.026 3.974 12 C -0.177 4.177 13 C -0.218 4.218 14 C -0.216 4.216 15 C 0.312 3.688 16 O -0.447 6.447 17 C -0.125 4.125 18 H 0.127 0.873 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.240 4.240 22 S -0.021 6.021 23 C -0.211 4.211 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.154 0.846 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.053 -2.971 3.823 10.266 hybrid contribution 1.309 0.350 -0.358 1.402 sum 10.362 -2.620 3.466 11.236 Atomic orbital electron populations 1.69875 1.06180 1.27268 1.48953 1.24819 0.94659 0.98776 0.93973 0.86957 0.80564 0.84215 0.78701 1.20089 1.20802 1.18850 1.21278 0.88824 0.94870 1.53064 0.90335 1.19892 0.96023 0.77916 0.97595 1.47908 1.63253 1.15754 1.04440 1.20891 0.92532 0.97796 0.86131 1.22769 0.98911 1.04419 0.91599 1.23056 1.03300 0.94139 1.01352 1.22895 1.01676 0.94896 1.02143 1.20356 0.77570 0.85448 0.85469 1.90603 1.45641 1.20712 1.87763 1.21471 0.95107 1.03152 0.92774 0.87341 1.21380 0.99353 1.00202 0.93958 1.21720 0.96054 1.01263 0.96780 1.23461 0.96186 1.04207 1.00136 1.87092 1.34197 1.69805 1.11044 1.23417 0.98645 1.00987 0.98093 0.92315 0.95095 0.94732 0.90464 0.89951 0.88148 0.88526 0.89312 0.89232 0.88829 0.91168 0.91243 0.90542 0.91095 0.88259 0.90280 0.84642 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.96 55.43 0.77 -24.37 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 19.69 27.47 -169.99 -4.67 15.02 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 7 C -0.54 -13.59 8.66 -34.44 -0.30 -13.89 16 8 H 0.08 2.19 7.50 -52.49 -0.39 1.80 16 9 C 0.21 4.42 3.97 -5.19 -0.02 4.40 16 10 N -0.58 -11.55 2.46 -175.06 -0.43 -11.98 16 11 C 0.15 2.66 5.65 -4.04 -0.02 2.63 16 12 C -0.16 -2.43 6.01 -90.62 -0.54 -2.97 16 13 C -0.18 -2.42 10.18 -26.69 -0.27 -2.69 16 14 C -0.18 -2.27 10.25 -26.69 -0.27 -2.54 16 15 C 0.53 10.37 6.64 -10.99 -0.07 10.30 16 16 O -0.57 -12.13 16.02 5.55 0.09 -12.04 16 17 C -0.10 -1.82 1.88 -91.93 -0.17 -1.99 16 18 H 0.11 2.03 5.66 -51.93 -0.29 1.74 16 19 C -0.11 -1.65 4.40 -27.16 -0.12 -1.77 16 20 C -0.12 -1.50 5.75 -26.90 -0.15 -1.65 16 21 C -0.09 -1.18 6.45 37.21 0.24 -0.94 16 22 S -0.25 -4.28 22.33 -107.50 -2.40 -6.68 16 23 C -0.06 -1.16 5.71 37.21 0.21 -0.95 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.65 7.50 -51.93 -0.39 0.27 16 26 H 0.03 0.74 4.96 -51.93 -0.26 0.48 16 27 H 0.08 1.40 7.50 -51.93 -0.39 1.01 16 28 H 0.08 1.46 7.81 -51.93 -0.41 1.05 16 29 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 30 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 35 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.14 2.93 6.16 -51.93 -0.32 2.61 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -28.17 336.79 -9.83 -38.00 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.67 Total: 6.98 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.60 Total: -10.00 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.34 Total: -36.36 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.67 Total: 15.02 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.40 Total: -6.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.17 -9.83 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354916831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.301 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds