Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48505 * 109.47053 * 269.99902 * 3 2 1 5 5 H 1.48501 * 109.47110 * 29.99920 * 3 2 1 6 6 H 1.48504 * 109.47387 * 150.00090 * 3 2 1 7 7 C 1.38795 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00304 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00068 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00449 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47455 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00068 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00029 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00038 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.01350 * 35.98782 * 14 13 11 16 16 C 1.52569 * 109.07417 * 276.98710 * 14 13 11 17 17 C 1.54793 * 111.68036 * 184.86695 * 16 14 13 18 18 C 1.51619 * 107.15685 * 57.19320 * 17 16 14 19 19 H 1.08999 * 109.76654 * 55.21943 * 18 17 16 20 20 C 1.52513 * 116.54861 * 180.76380 * 18 17 16 21 21 C 1.54909 * 105.32872 * 146.67000 * 20 18 17 22 22 C 1.55314 * 106.37752 * 356.55364 * 21 20 18 23 23 C 1.53266 * 103.09591 * 335.95285 * 22 21 20 24 24 H 1.09009 * 110.39930 * 284.42333 * 23 22 21 25 25 C 1.51777 * 115.80481 * 157.26518 * 23 22 21 26 26 H 0.97007 * 119.99878 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46874 * 59.99965 * 10 9 7 28 28 H 1.08994 * 109.46798 * 300.00336 * 10 9 7 29 29 H 0.97001 * 120.00016 * 0.02562 * 13 11 10 30 30 H 1.09001 * 109.08158 * 305.20329 * 16 14 13 31 31 H 1.09000 * 109.08460 * 64.19199 * 16 14 13 32 32 H 1.08994 * 109.60265 * 297.97500 * 17 16 14 33 33 H 1.09003 * 110.29059 * 176.79051 * 17 16 14 34 34 H 1.09007 * 110.27089 * 27.70778 * 20 18 17 35 35 H 1.09003 * 110.27420 * 265.63700 * 20 18 17 36 36 H 1.08996 * 110.07451 * 237.32348 * 21 20 18 37 37 H 1.08993 * 110.12140 * 115.80690 * 21 20 18 38 38 H 1.09002 * 110.72167 * 94.40350 * 22 21 20 39 39 H 1.09003 * 110.72340 * 217.50206 * 22 21 20 40 40 H 1.09000 * 109.90078 * 302.35302 * 25 23 22 41 41 H 1.09006 * 109.89965 * 63.48268 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7722 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3440 -2.2963 0.0024 13 7 6.0456 -4.4948 0.0030 14 6 7.4906 -4.7359 0.0037 15 1 7.9778 -3.9717 0.6094 16 6 8.0119 -4.6451 -1.4273 17 6 9.5138 -5.0096 -1.5130 18 6 9.6683 -6.4064 -0.9438 19 1 9.0071 -7.0944 -1.4707 20 6 11.0828 -6.9756 -0.9085 21 6 11.1352 -7.8638 0.3596 22 6 9.7606 -7.7027 1.0643 23 6 9.2693 -6.3413 0.5601 24 1 9.8039 -5.5347 1.0620 25 6 7.7693 -6.1173 0.6181 26 1 -0.4850 0.8401 -0.0004 27 1 3.6440 -3.4322 -0.8874 28 1 3.6433 -3.4310 0.8926 29 1 5.4290 -5.2436 0.0029 30 1 7.4466 -5.3324 -2.0567 31 1 7.8700 -3.6287 -1.7945 32 1 10.0961 -4.3020 -0.9228 33 1 9.8484 -4.9926 -2.5503 34 1 11.8126 -6.1692 -0.8352 35 1 11.2706 -7.5762 -1.7984 36 1 11.9354 -7.5277 1.0190 37 1 11.2931 -8.9057 0.0813 38 1 9.0767 -8.4957 0.7617 39 1 9.8814 -7.6921 2.1476 40 1 7.2564 -6.8890 0.0440 41 1 7.4308 -6.1377 1.6541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358965028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -71.489586 kcal Electronic energy + Delta-G solvation = -19922.377704 eV Core-core repulsion = 16926.644682 eV Total energy + Delta-G solvation = -2995.733022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39371 -38.91832 -35.64497 -33.03351 -32.43105 -31.56660 -29.57061 -27.89393 -26.80302 -25.58888 -22.75975 -21.45045 -20.63352 -20.22946 -19.90457 -17.85509 -16.45492 -16.10577 -15.47687 -15.19951 -15.14244 -14.95687 -14.63257 -13.99004 -13.69849 -13.60855 -13.32715 -13.09813 -12.78846 -12.66370 -12.32668 -11.99551 -11.63586 -11.43691 -11.28319 -11.22998 -11.01364 -10.99714 -10.85979 -10.69404 -10.61831 -10.47894 -10.17313 -9.84399 -9.45255 -9.00340 -8.90791 -8.48812 -6.90664 -6.28257 -3.99748 2.78441 3.00652 3.31475 3.34986 3.51324 3.66339 4.13665 4.32295 4.33962 4.37853 4.69067 4.74213 4.83386 4.95195 5.05773 5.08169 5.10854 5.19557 5.26290 5.32074 5.33581 5.37054 5.43787 5.50219 5.61569 5.63465 5.71324 5.78377 5.80853 5.82861 5.94780 6.00114 6.02902 6.07414 6.13662 6.17999 6.30962 6.64051 7.66850 7.94892 8.42351 8.53702 9.18015 10.81003 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.049645 B = 0.002988 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.869955 B = 9370.007879 C = 9616.898803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.520 6.520 13 N -0.734 5.734 14 C 0.150 3.850 15 H 0.084 0.916 16 C -0.130 4.130 17 C -0.105 4.105 18 C -0.096 4.096 19 H 0.072 0.928 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.093 4.093 24 H 0.079 0.921 25 C -0.113 4.113 26 H 0.271 0.729 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.398 0.602 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.373 -17.469 -0.356 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.394 6.394 13 N -0.388 5.388 14 C 0.045 3.955 15 H 0.102 0.898 16 C -0.169 4.169 17 C -0.143 4.143 18 C -0.115 4.115 19 H 0.090 0.910 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.112 4.112 24 H 0.097 0.903 25 C -0.151 4.151 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.232 0.768 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.474 -15.786 -0.351 26.655 hybrid contribution -1.204 -0.700 -0.082 1.395 sum 20.270 -16.486 -0.433 26.132 Atomic orbital electron populations 1.69943 1.05916 1.27747 1.48145 1.24718 0.94460 0.98981 0.93203 0.86729 0.81900 0.83256 0.79924 1.19221 1.19960 1.15909 1.22321 0.88319 0.97521 1.58690 0.89412 1.84778 1.09217 1.00181 1.97421 1.23286 0.94197 1.04286 1.05741 1.20283 0.90507 0.82460 0.75083 1.90692 1.58743 1.42212 1.47791 1.46089 1.07366 1.07927 1.77372 1.20924 0.80997 0.97117 0.96490 0.89820 1.22115 0.95464 1.02605 0.96673 1.21512 0.95996 0.95773 1.00991 1.21812 0.96651 0.96876 0.96154 0.90992 1.21934 0.96907 0.98975 0.97729 1.22492 0.97360 0.99641 0.96657 1.22190 0.96560 0.96889 0.99797 1.21905 0.95087 0.97872 0.96306 0.90275 1.21652 0.96042 0.96187 1.01263 0.91955 0.88577 0.88520 0.76803 0.92080 0.91072 0.91615 0.91658 0.91711 0.91932 0.91910 0.92020 0.91531 0.91685 0.91217 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 2 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.54 -107.50 -1.99 -5.63 16 10 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 11 C 0.53 9.45 7.78 -10.99 -0.09 9.36 16 12 O -0.52 -11.22 15.48 5.55 0.09 -11.13 16 13 N -0.73 -9.40 5.06 -53.65 -0.27 -9.67 16 14 C 0.15 1.70 2.43 -67.77 -0.16 1.53 16 15 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 16 C -0.13 -1.43 5.39 -26.01 -0.14 -1.57 16 17 C -0.10 -0.94 5.71 -26.49 -0.15 -1.09 16 18 C -0.10 -0.74 2.25 -90.11 -0.20 -0.95 16 19 H 0.07 0.57 7.99 -51.93 -0.42 0.15 16 20 C -0.12 -0.80 6.50 -25.97 -0.17 -0.97 16 21 C -0.12 -0.79 6.87 -24.50 -0.17 -0.95 16 22 C -0.12 -0.78 6.44 -25.37 -0.16 -0.95 16 23 C -0.09 -0.72 2.37 -89.65 -0.21 -0.94 16 24 H 0.08 0.68 8.08 -51.92 -0.42 0.26 16 25 C -0.11 -0.96 5.11 -26.97 -0.14 -1.09 16 26 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 28 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 29 H 0.40 3.98 8.59 -40.82 -0.35 3.62 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.44 8.07 -51.92 -0.42 0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -32.85 336.59 -9.27 -42.11 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.06 Total: -0.12 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.16 Total: -11.90 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.50 Total: -35.61 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.85 -9.27 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358965028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.378 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds