Wall clock time and date at job start Tue Mar 31 2020 05:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47506 * 270.00283 * 3 2 1 5 5 H 1.48498 * 109.47217 * 30.00678 * 3 2 1 6 6 H 1.48502 * 109.46767 * 150.00423 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09005 * 109.62044 * 34.62213 * 14 13 11 16 16 C 1.53288 * 109.62861 * 274.04624 * 14 13 11 17 17 C 1.52843 * 108.23669 * 176.60773 * 16 14 13 18 18 C 1.50962 * 111.50649 * 59.02369 * 17 16 14 19 19 H 1.09003 * 109.23810 * 185.52200 * 18 17 16 20 20 C 1.53998 * 112.60518 * 64.78750 * 18 17 16 21 21 C 1.54617 * 103.45624 * 197.63833 * 20 18 17 22 22 C 1.54011 * 106.58982 * 23.05682 * 21 20 18 23 23 C 1.53897 * 113.51775 * 307.62235 * 18 17 16 24 24 H 1.08997 * 111.85609 * 283.66170 * 23 18 17 25 25 C 1.52618 * 109.62912 * 155.00066 * 14 13 11 26 26 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 28 28 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 29 29 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 30 30 H 1.09001 * 109.71120 * 296.29336 * 16 14 13 31 31 H 1.08998 * 109.71222 * 56.92553 * 16 14 13 32 32 H 1.09004 * 109.07842 * 298.49756 * 17 16 14 33 33 H 1.09007 * 109.07659 * 179.54664 * 17 16 14 34 34 H 1.08997 * 110.62137 * 316.12555 * 20 18 17 35 35 H 1.09001 * 110.62838 * 78.98353 * 20 18 17 36 36 H 1.08998 * 110.03569 * 142.34506 * 21 20 18 37 37 H 1.09000 * 110.03059 * 263.72290 * 21 20 18 38 38 H 1.08996 * 110.09025 * 242.52741 * 22 21 20 39 39 H 1.08998 * 110.09027 * 120.94548 * 22 21 20 40 40 H 1.08999 * 109.19802 * 302.29016 * 25 14 13 41 41 H 1.09005 * 109.19319 * 61.56680 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 1 1.4098 -7.7587 -0.5959 16 6 2.0573 -8.1685 1.4245 17 6 1.4445 -9.5678 1.3766 18 6 2.3639 -10.5516 0.6941 19 1 1.8534 -11.5094 0.5925 20 6 3.6747 -10.7739 1.4711 21 6 4.6130 -11.4097 0.4193 22 6 4.0700 -10.9964 -0.9614 23 6 2.8431 -10.0846 -0.6918 24 1 2.0669 -10.1971 -1.4487 25 6 3.3697 -8.6490 -0.6280 26 1 -0.4851 0.8400 0.0004 27 1 3.1252 -3.7316 0.8875 28 1 3.1238 -3.7309 -0.8925 29 1 3.8010 -6.1834 -0.0093 30 1 2.9916 -8.1953 1.9852 31 1 1.3613 -7.4785 1.9015 32 1 0.5011 -9.5252 0.8322 33 1 1.2518 -9.9074 2.3944 34 1 4.0788 -9.8243 1.8219 35 1 3.5147 -11.4542 2.3076 36 1 5.6281 -11.0344 0.5491 37 1 4.6014 -12.4953 0.5164 38 1 3.7643 -11.8791 -1.5230 39 1 4.8315 -10.4458 -1.5137 40 1 3.6062 -8.3088 -1.6362 41 1 4.2751 -8.6260 -0.0214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358965030.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:59 Heat of formation + Delta-G solvation = -71.766885 kcal Electronic energy + Delta-G solvation = -20051.477560 eV Core-core repulsion = 17055.732514 eV Total energy + Delta-G solvation = -2995.745046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48363 -38.79863 -35.34012 -33.03294 -32.41354 -31.35137 -29.42429 -27.84153 -26.96548 -25.45677 -22.82003 -22.01502 -20.73770 -19.92745 -18.72289 -17.73511 -16.36094 -16.19825 -16.00828 -15.17913 -14.92770 -14.79175 -14.43622 -14.03563 -13.94571 -13.43341 -13.18677 -12.92508 -12.49247 -12.23319 -12.18128 -11.98396 -11.81913 -11.40612 -11.37801 -11.05247 -11.01006 -10.87394 -10.79582 -10.75443 -10.52204 -10.33201 -10.23832 -9.79157 -9.29502 -9.05480 -8.77857 -8.21295 -6.47924 -6.20229 -3.90483 3.07087 3.15292 3.23270 3.29060 3.33717 3.74574 4.21973 4.25862 4.28638 4.48376 4.81923 4.90422 4.95174 5.05215 5.14032 5.14845 5.20045 5.25515 5.34056 5.41316 5.44685 5.48482 5.50606 5.62594 5.67192 5.70736 5.76811 5.83881 5.88874 5.92194 6.02087 6.09078 6.14544 6.16456 6.17413 6.27400 6.36425 6.76268 7.60946 7.79534 8.36660 8.68578 9.25045 10.87206 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.045333 B = 0.002972 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.508710 B = 9419.304234 C = 9658.068359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.147 3.853 15 H 0.087 0.913 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.086 4.086 19 H 0.068 0.932 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.081 4.081 24 H 0.082 0.918 25 C -0.119 4.119 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.396 0.604 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.970 -22.687 0.694 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.389 5.389 14 C 0.042 3.958 15 H 0.105 0.895 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.105 4.105 19 H 0.087 0.913 20 C -0.159 4.159 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.100 4.100 24 H 0.100 0.900 25 C -0.157 4.157 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.805 -22.910 0.691 24.213 hybrid contribution 2.502 1.352 0.009 2.844 sum 10.306 -21.558 0.700 23.906 Atomic orbital electron populations 1.70022 1.05947 1.27427 1.46929 1.24994 0.95028 0.99023 0.94572 0.86168 0.79410 0.81585 0.78336 1.20283 1.20758 1.19703 1.22873 0.94904 0.91707 1.58855 0.90963 1.85387 1.05013 0.96290 1.96704 1.23539 1.06499 0.95581 1.04829 1.20292 0.86598 0.86270 0.75007 1.90693 1.15354 1.85587 1.47573 1.46087 1.09741 1.05439 1.77593 1.20856 0.97944 0.80562 0.96434 0.89478 1.21971 1.01316 0.96448 0.96987 1.20959 0.98659 0.94287 1.00656 1.21339 0.95813 0.98693 0.94623 0.91326 1.22355 0.95293 1.00775 0.97466 1.22188 0.99043 1.00222 0.94783 1.22445 0.97292 0.99167 0.97067 1.21918 0.97007 0.93924 0.97170 0.90011 1.21828 0.98441 0.94189 1.01211 0.92201 0.89324 0.89318 0.77072 0.91826 0.91088 0.91666 0.91863 0.91248 0.91886 0.92083 0.92107 0.91988 0.91678 0.91525 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.05 7.83 -10.98 -0.09 9.96 16 12 O -0.52 -11.85 15.52 5.55 0.09 -11.76 16 13 N -0.74 -10.02 5.09 -53.85 -0.27 -10.29 16 14 C 0.15 1.77 2.44 -67.98 -0.17 1.61 16 15 H 0.09 1.26 7.57 -51.93 -0.39 0.86 16 16 C -0.13 -1.47 5.39 -26.66 -0.14 -1.62 16 17 C -0.11 -1.03 5.38 -27.84 -0.15 -1.18 16 18 C -0.09 -0.70 2.70 -90.66 -0.25 -0.94 16 19 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 20 C -0.12 -0.90 5.74 -25.36 -0.15 -1.04 16 21 C -0.12 -0.84 6.71 -25.35 -0.17 -1.01 16 22 C -0.12 -0.85 6.15 -25.03 -0.15 -1.01 16 23 C -0.08 -0.66 3.47 -88.95 -0.31 -0.97 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 C -0.12 -1.07 4.09 -26.90 -0.11 -1.18 16 26 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.40 4.26 8.61 -40.82 -0.35 3.91 16 30 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 0.55 6.04 -51.93 -0.31 0.24 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.44 7.76 -51.93 -0.40 0.04 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.56 7.05 -51.93 -0.37 0.20 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -33.25 333.92 -9.71 -42.96 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.80 Total: 0.43 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.26 Total: -13.37 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.46 Total: -35.91 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.25 -9.71 -42.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358965030.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.810 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds