Wall clock time and date at job start Tue Mar 31 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46713 * 239.99704 * 3 2 1 5 5 H 1.48508 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47323 * 119.99653 * 3 2 1 7 7 C 1.38794 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00036 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00290 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00288 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47315 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99676 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00190 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.01703 * 35.97284 * 14 13 11 16 16 C 1.52572 * 109.01900 * 276.90062 * 14 13 11 17 17 C 1.53732 * 111.56143 * 294.19985 * 16 14 13 18 18 C 1.51787 * 107.25268 * 302.23031 * 17 16 14 19 19 H 1.09007 * 110.98086 * 303.92877 * 18 17 16 20 20 C 1.53276 * 115.80564 * 177.05033 * 18 17 16 21 21 C 1.55316 * 102.94573 * 202.85840 * 20 18 17 22 22 C 1.54914 * 106.37854 * 23.94619 * 21 20 18 23 23 C 1.52506 * 105.32342 * 3.45275 * 22 21 20 24 24 H 1.09002 * 109.76699 * 87.78646 * 23 22 21 25 25 C 1.51616 * 116.56393 * 213.32718 * 23 22 21 26 26 H 0.96999 * 120.00139 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47072 * 59.99981 * 10 9 7 28 28 H 1.09004 * 109.46983 * 300.00128 * 10 9 7 29 29 H 0.97010 * 119.99919 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.00568 * 173.68319 * 16 14 13 31 31 H 1.09002 * 109.02484 * 54.72534 * 16 14 13 32 32 H 1.09003 * 109.90582 * 182.78914 * 17 16 14 33 33 H 1.09005 * 109.96432 * 61.69842 * 17 16 14 34 34 H 1.09003 * 110.72256 * 84.48894 * 20 18 17 35 35 H 1.08997 * 110.85936 * 321.29623 * 20 18 17 36 36 H 1.08996 * 110.07291 * 264.71617 * 21 20 18 37 37 H 1.09002 * 110.11582 * 143.19936 * 21 20 18 38 38 H 1.09000 * 110.27571 * 244.49239 * 22 21 20 39 39 H 1.09003 * 110.35161 * 122.45574 * 22 21 20 40 40 H 1.09002 * 109.89764 * 299.13462 * 25 23 22 41 41 H 1.08997 * 109.89392 * 60.17876 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8442 -6.3430 0.0003 14 6 2.3305 -7.7151 -0.0009 15 1 1.4256 -7.7550 -0.6072 16 6 1.9924 -8.1206 1.4306 17 6 3.2520 -8.1980 2.3084 18 6 4.1933 -9.1955 1.6582 19 1 3.7065 -10.1615 1.5243 20 6 5.5536 -9.3729 2.3419 21 6 6.4485 -9.9243 1.1985 22 6 5.7940 -9.4654 -0.1285 23 6 4.6079 -8.6006 0.2852 24 1 4.9317 -7.5677 0.4135 25 6 3.3883 -8.6474 -0.6144 26 1 -0.4850 0.8400 -0.0004 27 1 3.1246 -3.7313 0.8905 28 1 3.1246 -3.7313 -0.8895 29 1 3.8011 -6.1834 0.0006 30 1 1.5066 -9.0963 1.4177 31 1 1.3068 -7.3872 1.8551 32 1 2.9863 -8.5369 3.3098 33 1 3.7286 -7.2191 2.3626 34 1 5.4841 -10.0919 3.1582 35 1 5.9341 -8.4174 2.7029 36 1 6.4827 -11.0128 1.2420 37 1 7.4555 -9.5151 1.2801 38 1 5.4512 -10.3286 -0.6989 39 1 6.5006 -8.8806 -0.7174 40 1 3.6515 -8.3026 -1.6144 41 1 3.0020 -9.6654 -0.6629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358965031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:01 Heat of formation + Delta-G solvation = -68.380862 kcal Electronic energy + Delta-G solvation = -20251.653318 eV Core-core repulsion = 17256.055101 eV Total energy + Delta-G solvation = -2995.598217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57756 -38.66230 -35.56184 -32.74726 -32.41253 -31.46682 -29.34988 -27.96699 -26.98598 -25.45234 -22.68891 -21.28004 -20.86458 -20.42128 -19.14598 -17.84530 -16.35212 -16.16409 -15.38240 -15.17519 -14.89737 -14.78868 -14.49963 -13.97135 -13.87490 -13.42278 -13.22176 -13.02910 -12.61098 -12.36413 -12.28918 -11.98415 -11.76344 -11.45772 -11.18949 -11.03827 -11.02791 -10.97885 -10.76009 -10.70571 -10.63873 -10.27384 -10.08869 -9.80107 -9.31568 -9.04729 -8.78452 -8.21587 -6.47813 -6.20005 -3.90354 3.08563 3.16166 3.24451 3.28666 3.33652 3.78293 4.15318 4.22236 4.36544 4.41577 4.79799 4.88021 4.97467 5.03457 5.13290 5.14972 5.20782 5.24974 5.34968 5.37994 5.43570 5.53835 5.60136 5.61828 5.70189 5.71205 5.76736 5.83414 5.87887 5.92170 6.02222 6.04910 6.15510 6.17313 6.18101 6.25939 6.35380 6.77348 7.60686 7.79531 8.36530 8.69059 9.25119 10.87376 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029456 B = 0.003379 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.354700 B = 8283.562683 C = 8693.990157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.733 5.733 14 C 0.149 3.851 15 H 0.085 0.915 16 C -0.130 4.130 17 C -0.107 4.107 18 C -0.093 4.093 19 H 0.075 0.925 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.098 4.098 24 H 0.072 0.928 25 C -0.114 4.114 26 H 0.269 0.731 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.395 0.605 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.468 -20.657 1.955 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.388 5.388 14 C 0.044 3.956 15 H 0.103 0.897 16 C -0.168 4.168 17 C -0.144 4.144 18 C -0.112 4.112 19 H 0.093 0.907 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.117 4.117 24 H 0.090 0.910 25 C -0.152 4.152 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.284 -20.880 1.945 23.356 hybrid contribution 2.468 1.383 0.007 2.830 sum 12.752 -19.497 1.951 23.378 Atomic orbital electron populations 1.70010 1.05946 1.27540 1.46836 1.24986 0.95020 0.98997 0.94551 0.86232 0.79243 0.81274 0.78795 1.19946 1.20814 1.19942 1.22834 0.94876 0.91749 1.58992 0.91025 1.85377 1.04987 0.96241 1.96706 1.23538 1.06495 0.95661 1.04764 1.20282 0.86603 0.86291 0.75033 1.90691 1.15365 1.85605 1.47682 1.46198 1.09725 1.05373 1.77493 1.20925 0.97273 0.81129 0.96248 0.89671 1.21923 0.97864 1.01854 0.95184 1.21370 0.95672 0.99026 0.98343 1.21920 0.95151 0.98782 0.95327 0.90651 1.22218 0.95121 1.01040 0.97293 1.22492 0.98850 1.00385 0.94415 1.21929 0.96899 0.99439 0.97169 1.21703 0.94400 0.99732 0.95843 0.90995 1.21671 0.94811 0.99870 0.98865 0.92144 0.89387 0.89386 0.77020 0.91591 0.90978 0.92021 0.91623 0.91863 0.91502 0.92032 0.92029 0.91772 0.91834 0.91165 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 9.96 7.73 -10.99 -0.08 9.87 16 12 O -0.52 -11.78 15.42 5.56 0.09 -11.69 16 13 N -0.73 -9.86 4.62 -53.63 -0.25 -10.11 16 14 C 0.15 1.76 2.69 -67.75 -0.18 1.58 16 15 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 16 C -0.13 -1.48 5.42 -26.57 -0.14 -1.62 16 17 C -0.11 -1.04 5.52 -26.97 -0.15 -1.19 16 18 C -0.09 -0.76 2.37 -89.89 -0.21 -0.97 16 19 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 20 C -0.12 -0.89 6.45 -25.36 -0.16 -1.05 16 21 C -0.12 -0.85 6.87 -24.49 -0.17 -1.01 16 22 C -0.12 -0.83 6.50 -25.97 -0.17 -1.00 16 23 C -0.10 -0.79 2.18 -90.37 -0.20 -0.99 16 24 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 25 C -0.11 -1.00 5.31 -27.03 -0.14 -1.14 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 29 H 0.39 4.38 6.82 -40.82 -0.28 4.10 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -33.00 335.06 -9.65 -42.66 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.84 Total: 0.61 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.19 Total: -13.55 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.49 Total: -35.72 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.00 -9.65 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358965031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.726 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds