Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47231 * 2 1 4 4 C 1.53000 * 109.46755 * 120.00100 * 2 1 3 5 5 H 1.09002 * 112.82776 * 283.15270 * 4 2 1 6 6 N 1.47299 * 113.52346 * 54.11072 * 4 2 1 7 7 C 1.34771 * 135.89149 * 268.64734 * 6 4 2 8 8 O 1.21284 * 119.99856 * 359.63558 * 7 6 4 9 9 C 1.50699 * 120.00404 * 179.35898 * 7 6 4 10 10 S 1.80998 * 109.47262 * 180.27992 * 9 7 6 11 11 C 1.76203 * 99.99909 * 179.97438 * 10 9 7 12 12 H 1.08006 * 120.00174 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00292 * 179.97438 * 11 10 9 14 14 N 1.31632 * 119.99619 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00317 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.46971 * 60.00118 * 15 13 11 17 17 H 1.48503 * 109.47282 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47366 * 300.00260 * 15 13 11 19 19 C 1.47294 * 88.21850 * 88.39671 * 6 4 2 20 20 C 1.52342 * 87.64719 * 26.29795 * 19 6 4 21 21 C 1.52626 * 122.03245 * 210.04473 * 20 19 6 22 22 C 1.54006 * 86.67529 * 207.82135 * 21 20 19 23 23 C 1.52625 * 122.03627 * 99.44249 * 20 19 6 24 24 H 1.08997 * 109.47658 * 300.00240 * 1 2 3 25 25 H 1.09005 * 109.46973 * 60.00447 * 1 2 3 26 26 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47003 * 239.99616 * 2 1 3 28 28 H 1.09004 * 109.47110 * 53.76352 * 3 2 1 29 29 H 1.08998 * 109.47080 * 173.75687 * 3 2 1 30 30 H 1.08994 * 109.47679 * 293.75711 * 3 2 1 31 31 H 1.09000 * 109.46951 * 300.27782 * 9 7 6 32 32 H 1.08995 * 109.46895 * 60.27234 * 9 7 6 33 33 H 0.96996 * 120.00049 * 179.97438 * 14 13 11 34 34 H 1.09007 * 113.52333 * 140.99212 * 19 6 4 35 35 H 1.08994 * 113.52377 * 271.53513 * 19 6 4 36 36 H 1.08997 * 113.67953 * 322.27005 * 21 20 19 37 37 H 1.09004 * 113.68033 * 93.37944 * 21 20 19 38 38 H 1.08995 * 113.56821 * 269.88176 * 22 21 20 39 39 H 1.09004 * 113.56630 * 139.11957 * 22 21 20 40 40 H 1.08995 * 113.68047 * 266.62324 * 23 20 19 41 41 H 1.08996 * 113.67820 * 37.73108 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.9653 -0.1115 2.1497 6 7 1.4894 -2.0780 1.4107 7 6 0.4230 -2.6222 2.0296 8 8 -0.3464 -1.9157 2.6457 9 6 0.1832 -4.1079 1.9508 10 16 -1.3196 -4.5261 2.8687 11 6 -1.3575 -6.2694 2.6159 12 1 -0.5838 -6.7476 2.0334 13 6 -2.3810 -7.0285 3.1661 14 7 -3.3237 -6.4458 3.8765 15 14 -2.4216 -8.8765 2.8975 16 1 -1.1857 -9.4847 3.4526 17 1 -3.6066 -9.4507 3.5840 18 1 -2.5042 -9.1636 1.4429 19 6 2.6089 -2.5796 0.5955 20 6 3.4085 -1.3697 1.0621 21 6 4.4922 -0.7327 0.1966 22 6 5.1560 -0.2873 1.5129 23 6 4.4277 -1.4607 2.1946 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.5884 1.9875 0.8289 29 1 3.1242 1.4444 0.1118 30 1 1.7709 1.9230 -0.9405 31 1 0.0656 -4.4022 0.9079 32 1 1.0325 -4.6365 2.3838 33 1 -4.0392 -6.9761 4.2607 34 1 3.0119 -3.5294 0.9472 35 1 2.4021 -2.5793 -0.4747 36 1 5.0816 -1.4547 -0.3686 37 1 4.1337 0.0953 -0.4149 38 1 4.8243 0.6916 1.8589 39 1 6.2412 -0.3905 1.5104 40 1 4.0177 -1.2122 3.1735 41 1 4.9988 -2.3890 2.1960 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359167964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = 11.411730 kcal Electronic energy + Delta-G solvation = -20561.229486 eV Core-core repulsion = 17569.091335 eV Total energy + Delta-G solvation = -2992.138151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50400 -38.21502 -36.03116 -34.31150 -32.41687 -29.98960 -27.68116 -27.00237 -25.93310 -25.73894 -25.38028 -22.84608 -20.91468 -19.14295 -17.87998 -17.64350 -16.64058 -16.08519 -15.76481 -15.23726 -14.79862 -14.67143 -14.05260 -14.01543 -13.79883 -13.60926 -13.14009 -12.75782 -12.52661 -12.30661 -12.19292 -11.95442 -11.80127 -11.50229 -11.39252 -11.11273 -11.03073 -11.01648 -10.92256 -10.83112 -10.69667 -10.39146 -10.13708 -9.80757 -9.25292 -9.04693 -8.43494 -8.22071 -6.48532 -6.20170 -3.90761 2.81639 3.12718 3.24239 3.25714 3.29648 3.59866 3.94530 4.21865 4.29026 4.48168 4.57752 4.73676 4.81822 4.88844 4.93888 5.09266 5.14785 5.24306 5.34890 5.45069 5.45829 5.49604 5.55487 5.58539 5.64505 5.66793 5.75314 5.81903 5.86212 5.91325 5.94310 6.01703 6.07294 6.12863 6.17377 6.18545 6.28408 6.40995 7.60435 7.99481 8.36358 8.63765 9.24813 10.87270 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027566 B = 0.003901 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.493483 B = 7175.584491 C = 7715.773087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.164 3.836 5 H 0.083 0.917 6 N -0.643 5.643 7 C 0.562 3.438 8 O -0.514 6.514 9 C -0.144 4.144 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.112 3.888 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.111 4.111 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.488 12.711 -9.514 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.205 4.205 4 C 0.060 3.940 5 H 0.101 0.899 6 N -0.380 5.380 7 C 0.352 3.648 8 O -0.388 6.388 9 C -0.295 4.295 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.011 4.011 20 C -0.120 4.120 21 C -0.163 4.163 22 C -0.176 4.176 23 C -0.148 4.148 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.937 13.607 -8.343 22.556 hybrid contribution 0.755 -2.180 -0.937 2.490 sum 16.693 11.428 -9.279 22.256 Atomic orbital electron populations 1.21727 0.93994 1.02561 1.01648 1.21258 0.96894 0.96092 0.97120 1.21890 1.01144 0.95310 1.02106 1.22100 0.87860 0.85975 0.98064 0.89851 1.49758 1.26077 1.09511 1.52661 1.19869 0.77723 0.89684 0.77560 1.90707 1.43599 1.62985 1.41491 1.23468 1.06740 0.93551 1.05698 1.85378 1.23976 1.07637 1.66313 1.22824 1.14130 0.92288 1.39146 0.91041 1.24982 0.94590 0.99440 0.94496 1.70010 1.12067 1.36267 1.31970 0.86229 0.77769 0.82984 0.78546 1.19937 1.20785 1.19935 1.22779 0.84401 0.97994 0.95945 1.22694 0.92962 0.97333 0.98973 1.22775 0.96445 1.00588 0.96537 1.22838 0.99608 0.98551 0.96571 1.22552 0.95941 0.99072 0.97263 0.92251 0.92874 0.92434 0.90759 0.92419 0.92068 0.92383 0.89532 0.89508 0.92134 0.90447 0.89961 0.89587 0.90362 0.90174 0.91363 0.91055 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.09 -0.98 2.14 -90.62 -0.19 -1.18 16 3 C -0.15 -1.21 8.89 37.15 0.33 -0.88 16 4 C 0.16 1.98 3.58 -71.37 -0.26 1.73 16 5 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 6 N -0.64 -9.71 2.94 -177.00 -0.52 -10.22 16 7 C 0.56 11.30 7.31 -10.99 -0.08 11.22 16 8 O -0.51 -12.26 16.63 5.55 0.09 -12.16 16 9 C -0.14 -3.09 5.98 36.01 0.22 -2.87 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.54 9.50 30.94 0.29 -15.25 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 14 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 15 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.11 1.25 7.84 -7.61 -0.06 1.19 16 20 C -0.12 -1.12 1.07 -155.47 -0.17 -1.29 16 21 C -0.13 -0.87 7.25 -26.40 -0.19 -1.06 16 22 C -0.14 -0.96 8.08 -25.70 -0.21 -1.17 16 23 C -0.11 -0.99 7.91 -26.40 -0.21 -1.19 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.91 7.06 -51.93 -0.37 0.54 16 27 H 0.07 0.71 7.11 -51.93 -0.37 0.34 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.42 5.89 -51.93 -0.31 0.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 32 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.08 0.80 7.54 -51.93 -0.39 0.41 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.51 5.37 -51.93 -0.28 0.23 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -33.83 343.13 -8.80 -42.62 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.75 Total: -2.15 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.29 Total: -10.23 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.21 Total: -35.98 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.83 -8.80 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359167964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.034 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds