Wall clock time and date at job start Tue Mar 31 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46898 * 2 1 4 4 C 1.53007 * 109.47130 * 119.99545 * 2 1 3 5 5 H 1.08997 * 112.82758 * 317.98782 * 4 2 1 6 6 N 1.47291 * 113.52377 * 187.02882 * 4 2 1 7 7 C 1.34775 * 135.88943 * 39.26674 * 6 4 2 8 8 O 1.21282 * 119.99897 * 355.98056 * 7 6 4 9 9 C 1.50700 * 120.00349 * 175.98051 * 7 6 4 10 10 S 1.80998 * 109.47527 * 179.97438 * 9 7 6 11 11 C 1.76195 * 100.00056 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00046 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99980 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00148 * 359.73429 * 13 11 10 15 15 Si 1.86800 * 119.99901 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47074 * 90.00907 * 15 13 11 17 17 H 1.48507 * 109.46894 * 210.00331 * 15 13 11 18 18 H 1.48500 * 109.47457 * 330.00221 * 15 13 11 19 19 C 1.47292 * 88.22294 * 219.01414 * 6 4 2 20 20 C 1.52340 * 87.64407 * 26.29577 * 19 6 4 21 21 C 1.52625 * 122.03519 * 210.04786 * 20 19 6 22 22 C 1.54008 * 86.67576 * 207.82532 * 21 20 19 23 23 C 1.52625 * 122.03214 * 99.44307 * 20 19 6 24 24 H 1.09002 * 109.47011 * 307.56353 * 1 2 3 25 25 H 1.08993 * 109.47183 * 67.56655 * 1 2 3 26 26 H 1.09006 * 109.46991 * 187.56682 * 1 2 3 27 27 H 1.08991 * 109.47277 * 239.99530 * 2 1 3 28 28 H 1.08993 * 109.47128 * 328.99892 * 3 2 1 29 29 H 1.09002 * 109.47209 * 89.00342 * 3 2 1 30 30 H 1.09009 * 109.46892 * 208.99972 * 3 2 1 31 31 H 1.09010 * 109.46775 * 60.00189 * 9 7 6 32 32 H 1.08999 * 109.46980 * 300.00497 * 9 7 6 33 33 H 0.96996 * 120.00220 * 179.97438 * 14 13 11 34 34 H 1.08996 * 113.53036 * 140.99079 * 19 6 4 35 35 H 1.09000 * 113.51884 * 271.60595 * 19 6 4 36 36 H 1.09000 * 113.68088 * 322.26643 * 21 20 19 37 37 H 1.09003 * 113.68351 * 93.38169 * 21 20 19 38 38 H 1.09000 * 113.56929 * 269.87884 * 22 21 20 39 39 H 1.09001 * 113.63682 * 139.13057 * 22 21 20 40 40 H 1.09000 * 113.68192 * 266.62120 * 23 20 19 41 41 H 1.08998 * 113.67779 * 37.63700 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2494 5 1 1.4773 -0.4626 2.1463 6 7 3.4997 -0.6318 1.4250 7 6 4.4395 0.3177 1.2470 8 8 4.1339 1.3924 0.7751 9 6 5.8700 0.0442 1.6341 10 16 6.8815 1.5015 1.2750 11 6 8.4565 0.9200 1.8096 12 1 8.5559 -0.0774 2.2115 13 6 9.5697 1.7435 1.7132 14 7 9.4497 2.9570 1.2175 15 14 11.2396 1.1267 2.2793 16 1 11.9357 0.4702 1.1437 17 1 12.0523 2.2718 2.7627 18 1 11.0583 0.1482 3.3814 19 6 3.4838 -2.0305 1.8863 20 6 2.2212 -2.2239 1.0561 21 6 1.1385 -3.2249 1.4503 22 6 0.8064 -3.3205 -0.0505 23 6 2.2526 -2.8687 -0.3269 24 1 -0.3633 0.6265 0.8146 25 1 -0.3633 0.3921 -0.9498 26 1 -0.3633 -1.0188 0.1353 27 1 1.8934 -0.5139 -0.8899 28 1 1.3306 2.0786 -0.5293 29 1 2.1442 1.7911 1.0275 30 1 3.0086 1.4855 -0.4983 31 1 6.2441 -0.8067 1.0647 32 1 5.9214 -0.1807 2.6994 33 1 10.2275 3.5326 1.1504 34 1 4.3319 -2.6156 1.5310 35 1 3.3191 -2.1330 2.9589 36 1 1.5306 -4.1506 1.8716 37 1 0.3378 -2.7907 2.0491 38 1 0.0552 -2.6014 -0.3773 39 1 0.5949 -4.3353 -0.3875 40 1 2.3387 -2.1509 -1.1427 41 1 2.9618 -3.6922 -0.4099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359167966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:01 Heat of formation + Delta-G solvation = 35.006879 kcal Electronic energy + Delta-G solvation = -20743.615392 eV Core-core repulsion = 17752.500403 eV Total energy + Delta-G solvation = -2991.114989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48928 -38.32335 -35.60435 -34.62832 -32.41880 -29.99731 -27.54645 -26.70080 -26.03938 -25.78268 -25.40545 -22.75560 -20.63027 -19.01336 -18.25947 -17.63873 -16.80069 -16.07635 -15.68121 -15.22877 -14.79820 -14.66392 -14.20421 -13.86001 -13.63415 -13.11084 -12.86731 -12.83801 -12.60037 -12.54397 -12.25024 -12.06326 -11.86245 -11.62941 -11.17780 -11.05284 -10.95878 -10.84277 -10.75212 -10.69713 -10.51227 -10.14221 -9.91920 -9.76313 -9.05507 -8.61607 -8.40748 -8.21653 -6.48090 -6.20613 -3.90703 2.83425 3.12082 3.22829 3.25729 3.30640 3.60717 4.01042 4.21801 4.31097 4.49454 4.61268 4.74385 4.87407 4.97407 5.06252 5.13035 5.14574 5.29708 5.39319 5.44600 5.50196 5.51353 5.56298 5.63476 5.70163 5.74239 5.79053 5.92755 5.97270 5.99241 6.04583 6.12877 6.15346 6.19674 6.26835 6.44974 6.63933 7.05880 7.60652 8.00452 8.36379 8.72405 9.24743 10.86842 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029527 B = 0.003998 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.052696 B = 7002.395618 C = 7683.515774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.141 4.141 4 C 0.165 3.835 5 H 0.088 0.912 6 N -0.643 5.643 7 C 0.553 3.447 8 O -0.500 6.500 9 C -0.144 4.144 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.112 3.888 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.113 4.113 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 -13.715 -0.382 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.197 4.197 4 C 0.061 3.939 5 H 0.106 0.894 6 N -0.380 5.380 7 C 0.344 3.656 8 O -0.375 6.375 9 C -0.295 4.295 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.012 4.012 20 C -0.121 4.121 21 C -0.158 4.158 22 C -0.180 4.180 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.396 -11.751 -1.155 21.859 hybrid contribution 1.533 -1.662 1.122 2.524 sum -16.863 -13.413 -0.032 21.547 Atomic orbital electron populations 1.21933 0.95153 1.01458 1.01843 1.21407 0.95293 0.98289 0.97210 1.22526 1.01494 0.92859 1.02855 1.22357 0.82177 0.91351 0.97997 0.89397 1.49751 1.07418 1.13522 1.67346 1.19821 0.85602 0.83009 0.77161 1.90759 1.80483 1.23851 1.42419 1.23491 0.94720 1.07159 1.04081 1.85329 1.01438 1.13386 1.83149 1.22865 0.93684 1.03159 1.48621 0.91030 1.24980 0.99087 0.94584 0.94864 1.70016 1.30766 1.07149 1.42384 0.86178 0.82061 0.78408 0.78925 1.20266 1.20737 1.19709 1.22736 0.97491 0.82219 0.98752 1.22771 0.96275 0.95083 0.97983 1.22645 0.97614 0.98701 0.96870 1.22969 0.97164 1.01549 0.96269 1.22604 0.97048 0.99863 0.95468 0.92768 0.92589 0.92496 0.90734 0.95282 0.92498 0.88719 0.89734 0.89632 0.92203 0.90363 0.89974 0.89544 0.91111 0.89635 0.91460 0.90626 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.99 37.16 0.33 -1.06 16 2 C -0.10 -1.27 2.76 -90.61 -0.25 -1.52 16 3 C -0.14 -2.22 7.48 37.16 0.28 -1.95 16 4 C 0.16 1.96 3.28 -71.37 -0.23 1.73 16 5 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 6 N -0.64 -9.52 3.57 -177.03 -0.63 -10.15 16 7 C 0.55 10.75 7.98 -10.99 -0.09 10.66 16 8 O -0.50 -11.06 10.34 5.56 0.06 -11.00 16 9 C -0.14 -3.04 5.98 36.01 0.22 -2.82 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 12 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 14 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 15 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.11 1.22 8.22 -7.61 -0.06 1.16 16 20 C -0.12 -1.13 1.23 -155.47 -0.19 -1.32 16 21 C -0.12 -0.84 7.90 -26.40 -0.21 -1.05 16 22 C -0.14 -1.00 7.94 -25.70 -0.20 -1.21 16 23 C -0.11 -1.00 7.43 -26.39 -0.20 -1.19 16 24 H 0.05 0.52 8.13 -51.93 -0.42 0.09 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.45 5.48 -51.93 -0.28 0.16 16 27 H 0.07 0.95 5.69 -51.93 -0.30 0.65 16 28 H 0.03 0.41 7.85 -51.93 -0.41 0.01 16 29 H 0.06 1.00 6.80 -51.93 -0.35 0.65 16 30 H 0.09 1.82 5.55 -53.95 -0.30 1.52 16 31 H 0.08 1.69 8.14 -51.91 -0.42 1.27 16 32 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.60 5.65 -51.93 -0.29 0.31 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.77 6.05 -51.93 -0.31 0.46 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.69 331.45 -8.93 -41.62 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.44 Total: -0.86 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.41 Total: -11.68 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.10 Total: -35.78 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.69 -8.93 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359167966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.628 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds