Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48495 * 109.47197 * 239.99848 * 3 2 1 5 5 H 1.48497 * 109.47442 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46765 * 120.00431 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 173.56065 * 7 2 1 9 9 C 1.50692 * 119.99934 * 353.56337 * 7 2 1 10 10 C 1.53004 * 115.55352 * 85.40862 * 9 7 2 11 11 N 1.46500 * 109.47082 * 65.12422 * 10 9 7 12 12 C 1.34772 * 120.00178 * 178.20650 * 11 10 9 13 13 O 1.21283 * 119.99803 * 0.28095 * 12 11 10 14 14 C 1.50703 * 120.00129 * 180.27344 * 12 11 10 15 15 C 1.53000 * 109.46910 * 180.02562 * 14 12 11 16 16 C 1.52586 * 109.22821 * 296.23554 * 15 14 12 17 17 C 1.53095 * 109.95557 * 169.00276 * 16 15 14 18 18 S 1.81744 * 108.83933 * 63.03128 * 17 16 15 19 19 C 1.81754 * 102.21964 * 306.72979 * 18 17 16 20 20 C 1.52584 * 109.22284 * 175.00344 * 15 14 12 21 21 C 1.53009 * 117.49696 * 231.07887 * 9 7 2 22 22 C 1.53002 * 117.49936 * 299.73732 * 9 7 2 23 23 H 0.97003 * 120.00760 * 5.06087 * 1 2 3 24 24 H 1.08999 * 109.46734 * 305.12423 * 10 9 7 25 25 H 1.09003 * 109.46980 * 185.12337 * 10 9 7 26 26 H 0.97003 * 119.99883 * 358.48539 * 11 10 9 27 27 H 1.08997 * 109.47067 * 300.00739 * 14 12 11 28 28 H 1.08998 * 109.46704 * 60.00582 * 14 12 11 29 29 H 1.08993 * 109.22299 * 55.59759 * 15 14 12 30 30 H 1.08993 * 109.39363 * 289.15908 * 16 15 14 31 31 H 1.09003 * 109.38399 * 48.85857 * 16 15 14 32 32 H 1.08994 * 109.57560 * 303.22019 * 17 16 15 33 33 H 1.09001 * 109.57318 * 182.83530 * 17 16 15 34 34 H 1.09000 * 109.57509 * 293.45846 * 19 18 17 35 35 H 1.09003 * 109.57467 * 173.07216 * 19 18 17 36 36 H 1.08995 * 109.39024 * 311.14109 * 20 15 14 37 37 H 1.08994 * 109.39265 * 70.84867 * 20 15 14 38 38 H 1.08996 * 117.49797 * 215.00186 * 21 9 7 39 39 H 1.08990 * 117.49586 * 0.02562 * 21 9 7 40 40 H 1.08999 * 117.49669 * 359.97407 * 22 9 7 41 41 H 1.08997 * 117.50268 * 144.97843 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1969 -0.1054 9 6 1.2582 -2.4950 0.1452 10 6 0.7024 -3.0859 -1.1521 11 7 1.8116 -3.4578 -2.0339 12 6 1.5607 -4.0354 -3.2254 13 8 0.4164 -4.2426 -3.5699 14 6 2.7019 -4.4236 -4.1299 15 6 2.1473 -5.0537 -5.4090 16 6 1.4155 -6.3454 -5.0565 17 6 0.6255 -6.8458 -6.2687 18 16 1.7907 -7.2413 -7.6061 19 6 2.7464 -5.7022 -7.7515 20 6 3.2977 -5.3305 -6.3724 21 6 1.7470 -3.4739 1.2148 22 6 0.4416 -2.7018 1.4224 23 1 -0.4851 0.8367 -0.0741 24 1 0.0755 -2.3456 -1.6491 25 1 0.1080 -3.9705 -0.9230 26 1 2.7268 -3.2921 -1.7584 27 1 3.2820 -3.5365 -4.3841 28 1 3.3424 -5.1423 -3.6186 29 1 1.4470 -4.3610 -5.8758 30 1 2.1409 -7.1027 -4.7595 31 1 0.7301 -6.1588 -4.2297 32 1 -0.0629 -6.0692 -6.6018 33 1 0.0656 -7.7402 -5.9956 34 1 2.0993 -4.9033 -8.1136 35 1 3.5724 -5.8495 -8.4474 36 1 3.9193 -4.4394 -6.4594 37 1 3.9002 -6.1542 -5.9895 38 1 1.6725 -4.5387 0.9943 39 1 2.6080 -3.1766 1.8133 40 1 0.4445 -1.8970 2.1574 41 1 -0.4918 -3.2584 1.3385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404157490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = -39.970418 kcal Electronic energy + Delta-G solvation = -20318.604258 eV Core-core repulsion = 17324.238010 eV Total energy + Delta-G solvation = -2994.366248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55763 -37.31161 -36.41581 -33.32278 -32.02154 -31.56697 -30.59962 -26.68308 -25.47596 -24.10428 -23.16643 -21.25540 -20.46604 -19.71002 -19.21910 -17.09600 -16.62767 -16.02022 -15.33001 -15.09010 -14.72965 -14.55735 -14.27009 -14.06629 -13.81166 -13.58856 -13.11445 -12.87606 -12.81168 -12.29945 -12.07082 -11.67757 -11.54810 -11.44323 -11.30487 -11.04196 -10.96547 -10.76347 -10.58980 -10.37863 -10.31425 -9.82645 -9.66869 -9.21912 -9.01853 -8.54494 -8.30999 -8.11463 -7.79153 -6.12391 -4.21572 1.69690 2.44101 3.17102 3.22929 3.29553 3.30538 3.80877 4.30985 4.52597 4.60512 4.72786 4.90268 5.08796 5.13116 5.15747 5.26685 5.31550 5.40822 5.49797 5.53160 5.59663 5.72163 5.82773 5.87664 5.94053 5.99674 6.28385 6.31062 6.33145 6.42162 6.52518 6.64736 6.84873 7.04965 7.25058 7.38788 7.44199 7.76387 8.26482 8.29146 8.78730 8.85453 9.45516 10.95352 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026224 B = 0.003564 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.449416 B = 7853.960265 C = 8382.543715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.163 3.837 11 N -0.703 5.703 12 C 0.502 3.498 13 O -0.556 6.556 14 C -0.136 4.136 15 C -0.078 4.078 16 C -0.122 4.122 17 C -0.070 4.070 18 S -0.288 6.288 19 C -0.076 4.076 20 C -0.118 4.118 21 C -0.211 4.211 22 C -0.148 4.148 23 H 0.263 0.737 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.400 0.600 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -10.294 -10.441 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.040 3.960 11 N -0.351 5.351 12 C 0.288 3.712 13 O -0.436 6.436 14 C -0.176 4.176 15 C -0.097 4.097 16 C -0.161 4.161 17 C -0.218 4.218 18 S -0.062 6.062 19 C -0.224 4.224 20 C -0.157 4.157 21 C -0.248 4.248 22 C -0.186 4.186 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.234 0.766 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.250 -11.239 -11.192 16.707 hybrid contribution 0.690 2.234 0.841 2.485 sum 5.939 -9.005 -10.351 14.950 Atomic orbital electron populations 1.69960 1.05911 1.27098 1.48022 1.24985 0.94798 0.98953 0.94249 0.86692 0.79669 0.83176 0.78651 1.20253 1.21248 1.20163 1.20299 0.92787 0.88639 1.52297 0.92253 1.19027 0.98572 0.93897 0.85762 1.20981 0.87398 0.96848 0.90782 1.46022 1.11423 1.59868 1.17814 1.20508 0.90411 0.78072 0.82244 1.90618 1.22961 1.55685 1.74348 1.21703 0.97741 1.02279 0.95917 1.20853 0.96695 0.97600 0.94520 1.21902 0.99853 0.96295 0.98036 1.23428 0.98245 1.04770 0.95340 1.86755 1.44453 1.24792 1.50237 1.23400 1.01544 0.96927 1.00562 1.21800 0.98048 1.02525 0.93327 1.23023 0.98694 0.95631 1.07456 1.22493 0.92256 1.01087 1.02812 0.92745 0.91028 0.94571 0.76635 0.88948 0.89167 0.90289 0.91483 0.88289 0.89725 0.88108 0.89882 0.88021 0.90639 0.90573 0.91676 0.90357 0.89830 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.93 12.91 55.43 0.72 -23.21 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 20.19 29.55 -169.99 -5.02 15.17 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.64 8.63 -34.44 -0.30 -12.93 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.43 16 10 C 0.16 3.59 5.50 -4.04 -0.02 3.57 16 11 N -0.70 -12.88 5.47 -60.29 -0.33 -13.21 16 12 C 0.50 8.54 7.44 -10.99 -0.08 8.46 16 13 O -0.56 -11.24 13.94 5.55 0.08 -11.16 16 14 C -0.14 -1.64 5.15 -27.88 -0.14 -1.78 16 15 C -0.08 -0.90 1.60 -91.05 -0.15 -1.04 16 16 C -0.12 -1.47 4.83 -26.89 -0.13 -1.60 16 17 C -0.07 -0.79 6.45 37.21 0.24 -0.55 16 18 S -0.29 -3.24 22.33 -107.50 -2.40 -5.64 16 19 C -0.08 -0.71 6.46 37.21 0.24 -0.46 16 20 C -0.12 -1.08 5.05 -26.89 -0.14 -1.21 16 21 C -0.21 -4.27 9.96 -26.69 -0.27 -4.53 16 22 C -0.15 -3.33 9.42 -26.69 -0.25 -3.58 16 23 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 24 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 25 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.40 6.67 8.37 -40.82 -0.34 6.33 16 27 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 30 H 0.07 0.75 8.06 -51.93 -0.42 0.34 16 31 H 0.10 1.45 5.67 -51.93 -0.29 1.15 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 37 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -28.26 342.61 -10.02 -38.27 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.91 Total: 8.03 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.30 Total: -13.41 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.39 Total: -36.42 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.40 Total: -5.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.26 -10.02 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404157490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.696 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds