Wall clock time and date at job start Tue Mar 31 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36295 * 119.93849 * 2 1 4 4 C 1.38899 * 121.18399 * 180.27478 * 3 2 1 5 5 C 1.38729 * 120.64453 * 359.46267 * 4 3 2 6 6 C 1.47456 * 120.37794 * 180.27241 * 5 4 3 7 7 O 1.21603 * 119.99798 * 173.98362 * 6 5 4 8 8 N 1.34780 * 119.99772 * 353.98753 * 6 5 4 9 9 C 1.46503 * 119.99617 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46782 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.47050 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99749 * 359.97438 * 11 10 9 13 13 C 1.37867 * 120.00283 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00609 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99878 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46930 * 90.00195 * 15 13 11 17 17 H 1.48503 * 109.47048 * 209.99878 * 15 13 11 18 18 H 1.48493 * 109.46993 * 329.99748 * 15 13 11 19 19 C 1.41742 * 119.24231 * 0.53066 * 5 4 3 20 20 C 1.40137 * 121.25023 * 179.76967 * 19 5 4 21 21 C 1.36257 * 119.68660 * 179.97438 * 20 19 5 22 22 C 1.39299 * 120.93581 * 0.02575 * 21 20 19 23 23 C 1.36139 * 120.94848 * 359.97438 * 22 21 20 24 24 C 1.40558 * 119.94061 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46770 * 89.99806 * 1 2 3 26 26 H 1.08996 * 109.46898 * 209.99855 * 1 2 3 27 27 H 1.09002 * 109.47170 * 329.99973 * 1 2 3 28 28 H 1.08006 * 119.40747 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.67793 * 179.70272 * 4 3 2 30 30 H 0.96993 * 120.00045 * 359.97438 * 8 6 5 31 31 H 1.08999 * 109.47093 * 300.00077 * 9 8 6 32 32 H 1.08999 * 109.46900 * 59.99661 * 9 8 6 33 33 H 1.08999 * 109.47191 * 299.99798 * 10 9 8 34 34 H 1.08992 * 109.47605 * 60.00363 * 10 9 8 35 35 H 0.96993 * 120.00447 * 180.02562 * 14 13 11 36 36 H 1.08005 * 120.15743 * 359.97438 * 20 19 5 37 37 H 1.08006 * 119.53200 * 179.97438 * 21 20 19 38 38 H 1.07993 * 119.52611 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.17242 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1811 0.0000 4 6 3.5759 1.2113 -0.0057 5 6 4.3088 0.0334 -0.0004 6 6 5.7829 0.0724 -0.0004 7 8 6.4183 -0.9580 0.1146 8 7 6.4258 1.2500 -0.1279 9 6 7.8903 1.2888 -0.1274 10 6 8.3622 2.7357 -0.2844 11 6 9.8687 2.7755 -0.2845 12 1 10.4331 1.8603 -0.1823 13 6 10.5265 3.9801 -0.4150 14 7 11.8412 4.0150 -0.4146 15 14 9.5503 5.5629 -0.5924 16 1 9.2872 6.1355 0.7523 17 1 10.3277 6.5359 -1.4013 18 1 8.2602 5.2755 -1.2692 19 6 3.6245 -1.2079 -0.0005 20 6 4.3228 -2.4229 0.0000 21 6 3.6327 -3.5978 0.0004 22 6 2.2397 -3.6101 -0.0001 23 6 1.5293 -2.4488 -0.0006 24 6 2.2085 -1.2180 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6366 2.1102 -0.0004 29 1 4.0900 2.1610 -0.0104 30 1 5.9189 2.0718 -0.2200 31 1 8.2641 0.8851 0.8136 32 1 8.2699 0.6904 -0.9556 33 1 7.9884 3.1397 -1.2252 34 1 7.9827 3.3336 0.5441 35 1 12.3040 4.8625 -0.5060 36 1 5.4028 -2.4281 0.0000 37 1 4.1733 -4.5328 0.0004 38 1 1.7159 -4.5545 -0.0002 39 1 0.4496 -2.4730 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412254325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:37 Heat of formation + Delta-G solvation = 0.199474 kcal Electronic energy + Delta-G solvation = -20860.252749 eV Core-core repulsion = 17732.184447 eV Total energy + Delta-G solvation = -3128.068302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88724 -38.98298 -36.73637 -35.11800 -33.84273 -32.82639 -30.63242 -30.36159 -29.80133 -27.59784 -24.88787 -23.58547 -23.04716 -21.97371 -20.84354 -20.07879 -17.71281 -17.35111 -16.95443 -16.77818 -15.38938 -15.21263 -15.12922 -14.57549 -14.31215 -14.27063 -14.19671 -13.57700 -13.38797 -13.27540 -12.90623 -12.77189 -12.59076 -12.33299 -12.05732 -11.53291 -11.36572 -11.33899 -11.20177 -11.05776 -10.43301 -10.22890 -9.97811 -9.82639 -9.42466 -9.23195 -8.77199 -8.69663 -8.60135 -7.91231 -6.12628 -4.13045 0.15632 0.89022 1.74537 2.65216 3.23889 3.31516 3.32329 3.32689 3.47393 4.06657 4.36106 4.43607 4.53346 4.62471 4.79191 4.86492 4.91264 5.09903 5.20186 5.22909 5.27385 5.33732 5.34840 5.49754 5.72085 5.79292 5.97176 6.03716 6.09351 6.11516 6.17169 6.20795 6.45188 6.51824 6.53162 6.66292 6.76781 6.95130 7.10416 7.19956 7.64218 7.81851 8.40858 8.49508 8.91533 9.47291 11.00406 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.003478 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.357263 B = 8047.554009 C = 9050.929111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.052 4.052 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.122 4.122 6 C 0.553 3.447 7 O -0.539 6.539 8 N -0.717 5.717 9 C 0.129 3.871 10 C -0.023 4.023 11 C -0.523 4.523 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.266 1.266 19 C -0.012 4.012 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.057 4.057 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.172 0.828 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.433 -8.885 0.548 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.052 4.052 3 C -0.147 4.147 4 C -0.093 4.093 5 C -0.125 4.125 6 C 0.341 3.659 7 O -0.419 6.419 8 N -0.367 5.367 9 C 0.007 3.993 10 C -0.060 4.060 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.013 4.013 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.057 4.057 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.230 0.770 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.189 0.811 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.766 -9.470 0.613 26.522 hybrid contribution -0.606 1.409 -0.131 1.539 sum -25.372 -8.061 0.482 26.626 Atomic orbital electron populations 1.20891 0.90778 1.03192 1.02729 1.19912 0.96084 0.92300 0.96947 1.20618 0.93795 0.97868 1.02469 1.21370 0.94257 0.97421 0.96238 1.20054 0.93269 0.93500 1.05642 1.18094 0.86690 0.84099 0.77055 1.90538 1.68103 1.32373 1.50903 1.46287 1.09522 1.08291 1.72598 1.21574 0.75589 1.00236 1.01876 1.19805 0.98241 0.91156 0.96844 1.20907 0.88698 0.95498 1.51045 0.90567 1.24998 0.94796 0.99064 0.94403 1.69900 1.07157 1.26490 1.50086 0.86757 0.80474 0.83383 0.78499 1.20196 1.21235 1.19082 1.17881 0.91907 0.92971 0.98532 1.22316 1.03833 0.90718 0.95648 1.21047 0.94064 0.98627 1.00395 1.20917 0.94516 0.98105 0.99679 1.20985 0.99608 0.91477 1.01466 1.17911 0.92256 0.93523 1.02054 0.90631 0.91052 0.91049 0.85345 0.85234 0.76975 0.91649 0.91625 0.95951 0.96389 0.92518 0.81120 0.85920 0.86157 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.52 36.01 0.34 -0.45 16 2 C -0.05 -0.53 5.89 -104.45 -0.62 -1.14 16 3 C -0.13 -1.29 9.56 -40.04 -0.38 -1.67 16 4 C -0.07 -0.86 9.51 -39.16 -0.37 -1.23 16 5 C -0.12 -1.77 5.90 -104.62 -0.62 -2.39 16 6 C 0.55 9.51 7.72 -12.50 -0.10 9.41 16 7 O -0.54 -10.70 13.39 5.28 0.07 -10.63 16 8 N -0.72 -12.03 5.51 -61.37 -0.34 -12.37 16 9 C 0.13 2.62 5.61 -4.04 -0.02 2.60 16 10 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 11 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 12 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 15 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 19 C -0.01 -0.18 5.76 -106.56 -0.61 -0.79 16 20 C -0.11 -1.57 9.21 -39.58 -0.36 -1.93 16 21 C -0.12 -1.44 9.95 -39.90 -0.40 -1.84 16 22 C -0.11 -1.14 9.95 -39.94 -0.40 -1.54 16 23 C -0.12 -1.19 9.27 -39.45 -0.37 -1.55 16 24 C -0.06 -0.69 5.74 -106.86 -0.61 -1.31 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.41 6.39 -51.93 -0.33 0.08 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 29 H 0.13 1.25 6.42 -52.49 -0.34 0.91 16 30 H 0.40 5.53 6.54 -40.82 -0.27 5.26 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 34 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.17 2.80 4.87 -52.58 -0.26 2.55 16 37 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.92 6.34 -52.49 -0.33 0.59 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -32.48 322.27 -9.20 -41.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.83 Total: 4.20 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -5.06 Total: -17.49 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.44 Total: -38.86 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.07 Total: -10.63 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.48 -9.20 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412254325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.886 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds