Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86808 * 120.00348 * 2 1 4 4 H 1.48500 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46702 * 300.00308 * 3 2 1 6 6 H 1.48499 * 109.46420 * 60.00241 * 3 2 1 7 7 C 1.38804 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99857 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99687 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99930 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99928 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99676 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.01373 * 53.60834 * 15 14 13 17 17 C 1.54269 * 110.03248 * 292.17165 * 15 14 13 18 18 C 1.54892 * 104.19717 * 217.10324 * 17 15 14 19 19 C 1.54966 * 102.77288 * 37.91301 * 18 17 15 20 20 C 1.53868 * 110.03669 * 175.00353 * 15 14 13 21 21 H 1.09004 * 110.02970 * 238.62168 * 20 15 14 22 22 C 1.53006 * 110.03114 * 359.97438 * 20 15 14 23 23 C 1.52993 * 117.50020 * 248.06001 * 22 20 15 24 24 C 1.52999 * 117.49726 * 179.39722 * 22 20 15 25 25 H 0.97000 * 119.99386 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47388 * 59.99930 * 10 9 7 27 27 H 1.09008 * 109.47402 * 299.99567 * 10 9 7 28 28 H 0.97002 * 119.99831 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47393 * 60.00244 * 14 13 11 30 30 H 1.08992 * 109.47356 * 299.99976 * 14 13 11 31 31 H 1.09003 * 110.48449 * 335.77992 * 17 15 14 32 32 H 1.09000 * 110.49191 * 98.42335 * 17 15 14 33 33 H 1.08994 * 110.75375 * 156.25329 * 18 17 15 34 34 H 1.08998 * 110.75361 * 279.44265 * 18 17 15 35 35 H 1.08998 * 110.52812 * 203.43397 * 19 18 17 36 36 H 1.08998 * 110.47668 * 80.77437 * 19 18 17 37 37 H 1.09000 * 115.54664 * 33.73148 * 22 20 15 38 38 H 1.09007 * 117.50025 * 0.02562 * 23 22 20 39 39 H 1.09004 * 117.49938 * 145.02423 * 23 22 20 40 40 H 1.08996 * 117.49497 * 214.97710 * 24 22 20 41 41 H 1.08995 * 117.49927 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8439 -6.3432 -0.0008 14 6 2.3301 -7.7151 -0.0008 15 6 3.5021 -8.6987 -0.0009 16 1 4.1785 -8.4731 0.8235 17 6 4.2584 -8.6194 -1.3432 18 6 4.6677 -10.0843 -1.6357 19 6 3.4375 -10.8884 -1.1445 20 6 2.9802 -10.1407 0.1249 21 1 3.4033 -10.6149 1.0105 22 6 1.4526 -10.1395 0.2114 23 6 0.8198 -10.5611 1.5390 24 6 0.7505 -11.4939 0.3273 25 1 -0.4849 0.8401 -0.0004 26 1 3.1243 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 3.8007 -6.1836 -0.0004 29 1 1.7218 -7.8753 -0.8910 30 1 1.7212 -7.8751 0.8889 31 1 3.6033 -8.2422 -2.1285 32 1 5.1420 -7.9885 -1.2466 33 1 4.8267 -10.2350 -2.7034 34 1 5.5599 -10.3561 -1.0716 35 1 3.7219 -11.9124 -0.9024 36 1 2.6498 -10.8783 -1.8979 37 1 0.9500 -9.3593 -0.3604 38 1 1.4918 -10.8390 2.3511 39 1 -0.0993 -10.0587 1.8405 40 1 -0.2142 -11.6047 -0.1678 41 1 1.3768 -12.3858 0.3415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413874820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -34.154573 kcal Electronic energy + Delta-G solvation = -19719.363261 eV Core-core repulsion = 16725.249207 eV Total energy + Delta-G solvation = -2994.114054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05273 -38.68539 -36.23076 -34.23345 -32.41309 -30.68648 -28.96430 -28.50517 -25.50606 -24.39549 -22.69521 -22.29980 -20.80910 -20.22988 -18.99762 -17.75021 -16.68222 -16.22573 -15.72166 -15.35746 -15.13517 -14.79206 -14.53416 -14.21159 -13.87236 -13.69996 -13.05513 -12.85484 -12.61842 -12.53459 -11.83668 -11.78940 -11.70065 -11.45405 -11.29360 -11.06307 -11.00188 -10.96875 -10.87769 -10.73956 -10.51928 -10.28860 -10.00944 -9.78556 -9.33740 -9.06252 -8.78514 -8.20677 -6.47818 -6.20334 -3.90429 3.08569 3.16289 3.22522 3.29618 3.35065 3.59475 3.77100 4.21809 4.23850 4.33105 4.41475 4.71101 4.81650 4.86287 5.02757 5.14834 5.16292 5.20539 5.25639 5.28630 5.36466 5.44972 5.46712 5.52272 5.61242 5.66470 5.73106 5.77024 5.81976 5.87896 5.92918 5.95285 6.00035 6.04487 6.15564 6.17315 6.23097 6.71482 7.61347 7.78515 8.36953 8.68185 9.25119 10.87162 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.003035 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.020625 B = 9222.489694 C = 9868.152782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.739 5.739 14 C 0.129 3.871 15 C -0.097 4.097 16 H 0.078 0.922 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.051 4.051 21 H 0.073 0.927 22 C -0.155 4.155 23 C -0.180 4.180 24 C -0.181 4.181 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.617 -22.769 -0.640 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.394 5.394 14 C 0.005 3.995 15 C -0.116 4.116 16 H 0.097 0.903 17 C -0.160 4.160 18 C -0.163 4.163 19 C -0.153 4.153 20 C -0.070 4.070 21 H 0.091 0.909 22 C -0.173 4.173 23 C -0.217 4.217 24 C -0.218 4.218 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.436 -23.003 -0.634 24.183 hybrid contribution 2.398 1.357 0.068 2.756 sum 9.833 -21.646 -0.566 23.781 Atomic orbital electron populations 1.70033 1.05947 1.27305 1.47012 1.25000 0.95029 0.99032 0.94580 0.86115 0.79586 0.81898 0.77885 1.19623 1.20579 1.20575 1.22915 0.94938 0.91680 1.58740 0.90904 1.85393 1.05054 0.96326 1.96699 1.23534 1.06479 0.95560 1.04835 1.20286 0.86552 0.86293 0.75221 1.90693 1.15393 1.85662 1.47644 1.46078 1.09817 1.05742 1.77741 1.21593 0.95594 0.80110 1.02163 1.21997 0.96665 0.94407 0.98549 0.90329 1.22493 0.99895 0.96814 0.96783 1.22499 0.97783 0.95145 1.00882 1.22400 0.97609 0.98356 0.96972 1.21317 0.92629 0.94542 0.98520 0.90859 1.22625 0.94634 0.98737 1.01346 1.23029 1.03108 1.03889 0.91633 1.22925 1.02192 0.93997 1.02669 0.92261 0.89309 0.89313 0.77049 0.91563 0.91232 0.91031 0.91539 0.91583 0.91634 0.91862 0.91128 0.86651 0.88988 0.88720 0.88969 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.10 7.85 -10.98 -0.09 10.01 16 12 O -0.52 -12.02 15.86 5.56 0.09 -11.94 16 13 N -0.74 -10.08 5.40 -60.29 -0.33 -10.40 16 14 C 0.13 1.54 3.56 -4.04 -0.01 1.53 16 15 C -0.10 -0.85 2.96 -89.50 -0.26 -1.11 16 16 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.12 -0.99 6.09 -25.07 -0.15 -1.14 16 18 C -0.13 -0.88 6.91 -24.70 -0.17 -1.05 16 19 C -0.12 -0.83 6.11 -25.03 -0.15 -0.99 16 20 C -0.05 -0.41 3.08 -89.51 -0.28 -0.68 16 21 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 22 C -0.16 -1.40 3.59 -90.62 -0.33 -1.73 16 23 C -0.18 -1.59 10.19 -26.70 -0.27 -1.86 16 24 C -0.18 -1.46 9.97 -26.69 -0.27 -1.73 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 27 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 28 H 0.40 4.27 8.36 -40.82 -0.34 3.92 16 29 H 0.07 0.86 6.76 -51.93 -0.35 0.51 16 30 H 0.07 0.92 7.20 -51.93 -0.37 0.55 16 31 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.12 1.22 5.67 -51.93 -0.29 0.92 16 38 H 0.09 0.74 8.07 -51.92 -0.42 0.33 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -33.52 344.53 -9.88 -43.41 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.77 Total: 1.48 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.56 Total: -14.73 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.41 Total: -36.01 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.52 -9.88 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413874820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds