Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86808 * 120.00348 * 2 1 4 4 H 1.48500 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46702 * 300.00308 * 3 2 1 6 6 H 1.48499 * 109.46420 * 60.00241 * 3 2 1 7 7 C 1.38804 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99857 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99687 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47023 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99930 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99928 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99676 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 11 16 16 H 1.09001 * 110.01373 * 53.60834 * 15 14 13 17 17 C 1.54269 * 110.03248 * 292.17165 * 15 14 13 18 18 C 1.54892 * 104.19717 * 217.10324 * 17 15 14 19 19 C 1.54966 * 102.77288 * 37.91301 * 18 17 15 20 20 C 1.53868 * 110.03669 * 175.00353 * 15 14 13 21 21 H 1.09004 * 110.02970 * 238.62168 * 20 15 14 22 22 C 1.53006 * 110.03114 * 359.97438 * 20 15 14 23 23 C 1.52993 * 117.50020 * 248.06001 * 22 20 15 24 24 C 1.52999 * 117.49726 * 179.39722 * 22 20 15 25 25 H 0.97000 * 119.99386 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47388 * 59.99930 * 10 9 7 27 27 H 1.09008 * 109.47402 * 299.99567 * 10 9 7 28 28 H 0.97002 * 119.99831 * 359.97438 * 13 11 10 29 29 H 1.09003 * 109.47393 * 60.00244 * 14 13 11 30 30 H 1.08992 * 109.47356 * 299.99976 * 14 13 11 31 31 H 1.09003 * 110.48449 * 335.77992 * 17 15 14 32 32 H 1.09000 * 110.49191 * 98.42335 * 17 15 14 33 33 H 1.08994 * 110.75375 * 156.25329 * 18 17 15 34 34 H 1.08998 * 110.75361 * 279.44265 * 18 17 15 35 35 H 1.08998 * 110.52812 * 203.43397 * 19 18 17 36 36 H 1.08998 * 110.47668 * 80.77437 * 19 18 17 37 37 H 1.09000 * 115.54664 * 33.73148 * 22 20 15 38 38 H 1.09007 * 117.50025 * 0.02562 * 23 22 20 39 39 H 1.09004 * 117.49938 * 145.02423 * 23 22 20 40 40 H 1.08996 * 117.49497 * 214.97710 * 24 22 20 41 41 H 1.08995 * 117.49927 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 -0.0012 12 8 0.7909 -5.5023 -0.0011 13 7 2.8439 -6.3432 -0.0008 14 6 2.3301 -7.7151 -0.0008 15 6 3.5021 -8.6987 -0.0009 16 1 4.1785 -8.4731 0.8235 17 6 4.2584 -8.6194 -1.3432 18 6 4.6677 -10.0843 -1.6357 19 6 3.4375 -10.8884 -1.1445 20 6 2.9802 -10.1407 0.1249 21 1 3.4033 -10.6149 1.0105 22 6 1.4526 -10.1395 0.2114 23 6 0.8198 -10.5611 1.5390 24 6 0.7505 -11.4939 0.3273 25 1 -0.4849 0.8401 -0.0004 26 1 3.1243 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 3.8007 -6.1836 -0.0004 29 1 1.7218 -7.8753 -0.8910 30 1 1.7212 -7.8751 0.8889 31 1 3.6033 -8.2422 -2.1285 32 1 5.1420 -7.9885 -1.2466 33 1 4.8267 -10.2350 -2.7034 34 1 5.5599 -10.3561 -1.0716 35 1 3.7219 -11.9124 -0.9024 36 1 2.6498 -10.8783 -1.8979 37 1 0.9500 -9.3593 -0.3604 38 1 1.4918 -10.8390 2.3511 39 1 -0.0993 -10.0587 1.8405 40 1 -0.2142 -11.6047 -0.1678 41 1 1.3768 -12.3858 0.3415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413874820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -54.768950 kcal Electronic energy + Delta-G solvation = -19720.257168 eV Core-core repulsion = 16725.249207 eV Total energy + Delta-G solvation = -2995.007961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02573 -39.92950 -36.97868 -35.44424 -34.58507 -31.91534 -29.95959 -29.41339 -27.67728 -25.38629 -23.37351 -23.02851 -21.72650 -21.34661 -20.07046 -19.48916 -17.88438 -17.40094 -16.88399 -16.80074 -16.52498 -16.17133 -15.74801 -15.31745 -14.91285 -14.77409 -14.55842 -14.35889 -13.69656 -13.47976 -13.19468 -13.16087 -12.90970 -12.63629 -12.47621 -12.37631 -12.14066 -11.86090 -11.76075 -11.68583 -11.47522 -11.24005 -11.15986 -11.00860 -10.91644 -10.67847 -10.27390 -10.06751 -8.67137 -8.34918 -6.13116 1.27409 1.41626 1.47557 1.58826 1.62399 2.26452 2.32852 2.91105 2.99278 3.32126 3.52094 3.65664 3.76559 3.97634 4.02889 4.09637 4.20236 4.29428 4.40487 4.43923 4.50502 4.53072 4.58903 4.69953 4.78213 4.80647 4.89726 4.91451 4.97098 5.07154 5.12531 5.21647 5.28300 5.33237 5.37005 5.41948 5.46086 5.52767 5.58940 6.19968 6.52896 7.06393 7.26316 8.74632 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032324 B = 0.003035 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.020625 B = 9222.489694 C = 9868.152782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.712 5.712 14 C 0.132 3.868 15 C -0.089 4.089 16 H 0.093 0.907 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.046 4.046 21 H 0.085 0.915 22 C -0.164 4.164 23 C -0.187 4.187 24 C -0.171 4.171 25 H 0.271 0.729 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.414 0.586 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.730 -23.602 -0.533 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.108 4.108 16 H 0.111 0.889 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.065 4.065 21 H 0.103 0.897 22 C -0.182 4.182 23 C -0.224 4.224 24 C -0.208 4.208 25 H 0.080 0.920 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.251 0.749 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.604 -23.875 -0.530 26.129 hybrid contribution 1.431 1.487 0.030 2.064 sum 12.036 -22.388 -0.500 25.423 Atomic orbital electron populations 1.70197 1.08003 1.28543 1.48081 1.26155 0.95986 1.03380 0.93738 0.84883 0.78612 0.76228 0.78071 1.17967 1.19930 1.19921 1.23240 0.95350 0.91951 1.58768 0.89885 1.85593 1.10696 0.99319 1.97045 1.23376 1.03496 0.94390 1.06769 1.20093 0.86264 0.86764 0.75187 1.90683 1.17512 1.86179 1.50352 1.45843 1.10193 1.05329 1.75231 1.21682 0.96950 0.79564 1.00922 1.21981 0.95364 0.93796 0.99619 0.88910 1.22500 0.99868 0.98045 0.95678 1.22489 0.98004 0.93956 1.01390 1.22391 0.97482 0.99066 0.96192 1.21320 0.91572 0.94103 0.99539 0.89654 1.22576 0.95523 0.98879 1.01217 1.23067 1.02902 1.04359 0.92113 1.22978 1.02209 0.93988 1.01588 0.92000 0.87219 0.87227 0.74871 0.92913 0.92577 0.92608 0.90355 0.91204 0.90364 0.90486 0.92062 0.88899 0.87866 0.90032 0.89165 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.40 9.50 67.96 0.65 -30.76 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 10 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 11 C 0.53 20.16 7.85 87.66 0.69 20.84 16 12 O -0.57 -27.21 15.86 -3.02 -0.05 -27.26 16 13 N -0.71 -18.51 5.40 -463.06 -2.50 -21.02 16 14 C 0.13 3.09 3.56 86.38 0.31 3.40 16 15 C -0.09 -1.36 2.96 -10.07 -0.03 -1.39 16 16 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 17 C -0.12 -1.71 6.09 31.67 0.19 -1.51 16 18 C -0.12 -1.35 6.91 31.91 0.22 -1.13 16 19 C -0.11 -1.37 6.11 31.69 0.19 -1.17 16 20 C -0.05 -0.65 3.08 -10.07 -0.03 -0.68 16 21 H 0.09 1.04 7.94 -2.38 -0.02 1.02 16 22 C -0.16 -2.88 3.59 -10.79 -0.04 -2.92 16 23 C -0.19 -3.24 10.19 30.62 0.31 -2.93 16 24 C -0.17 -2.59 9.97 30.62 0.31 -2.28 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 27 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 28 H 0.41 7.82 8.36 -92.71 -0.77 7.04 16 29 H 0.05 1.42 6.76 -2.39 -0.02 1.40 16 30 H 0.06 1.50 7.20 -2.39 -0.02 1.49 16 31 H 0.06 0.96 7.76 -2.39 -0.02 0.94 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.86 7.86 -2.39 -0.02 0.84 16 37 H 0.09 2.06 5.67 -2.39 -0.01 2.05 16 38 H 0.10 1.53 8.07 -2.38 -0.02 1.51 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -74.89 344.53 2.51 -72.38 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.24 Total: 20.19 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.67 Total: -24.13 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.22 Total: -77.20 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -74.89 2.51 -72.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413874820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.611 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds