Wall clock time and date at job start Tue Mar 31 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48501 * 109.47167 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47091 * 29.99880 * 3 2 1 6 6 H 1.48500 * 109.47306 * 149.99857 * 3 2 1 7 7 C 1.38802 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00141 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99907 * 179.97438 * 7 2 1 10 10 C 1.81008 * 99.99832 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46969 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99849 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00087 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00092 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46965 * 179.97438 * 14 13 11 16 16 H 1.09002 * 110.01895 * 305.70430 * 15 14 13 17 17 C 1.53873 * 110.03127 * 67.09419 * 15 14 13 18 18 C 1.54269 * 106.59646 * 119.33247 * 17 15 14 19 19 C 1.54882 * 104.19831 * 23.61137 * 18 17 15 20 20 C 1.54273 * 110.07278 * 184.28319 * 15 14 13 21 21 H 1.09001 * 110.48533 * 335.76669 * 20 15 14 22 22 C 1.52997 * 110.48458 * 98.40693 * 20 15 14 23 23 C 1.53000 * 117.50028 * 248.62643 * 22 20 15 24 24 C 1.52999 * 117.50105 * 179.97438 * 22 20 15 25 25 H 0.96999 * 119.99356 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46721 * 60.00138 * 10 9 7 27 27 H 1.08995 * 109.47230 * 299.99893 * 10 9 7 28 28 H 0.96998 * 119.99585 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.47140 * 60.00325 * 14 13 11 30 30 H 1.08994 * 109.47429 * 300.00342 * 14 13 11 31 31 H 1.08996 * 110.03511 * 238.61485 * 17 15 14 32 32 H 1.09002 * 110.03221 * 0.02562 * 17 15 14 33 33 H 1.09000 * 110.48429 * 142.29450 * 18 17 15 34 34 H 1.09001 * 110.48672 * 264.92943 * 18 17 15 35 35 H 1.08998 * 110.75605 * 80.36842 * 19 18 17 36 36 H 1.09003 * 110.75885 * 203.74658 * 19 18 17 37 37 H 1.09004 * 115.55264 * 34.32527 * 22 20 15 38 38 H 1.09005 * 117.49661 * 359.97438 * 23 22 20 39 39 H 1.08996 * 117.50569 * 145.02205 * 23 22 20 40 40 H 1.08994 * 117.50037 * 214.97733 * 24 22 20 41 41 H 1.08999 * 117.49533 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9847 0.0017 11 6 5.5730 -3.2327 0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0457 -4.4948 0.0014 14 6 7.4907 -4.7359 -0.0001 15 6 7.7563 -6.2427 0.0016 16 1 7.2335 -6.7128 0.8346 17 6 7.2920 -6.8612 -1.3286 18 6 8.5412 -7.4859 -1.9838 19 6 9.5014 -7.7484 -0.7973 20 6 9.2714 -6.5131 0.1083 21 1 9.8384 -5.6585 -0.2609 22 6 9.6582 -6.8297 1.5543 23 6 10.5129 -5.8016 2.2983 24 6 11.1313 -7.1255 1.8430 25 1 -0.4849 0.8401 0.0004 26 1 3.6433 -3.4326 -0.8876 27 1 3.6440 -3.4307 0.8923 28 1 5.4290 -5.2436 0.0028 29 1 7.9346 -4.2881 0.8890 30 1 7.9326 -4.2897 -0.8909 31 1 6.5440 -7.6315 -1.1413 32 1 6.8779 -6.0879 -1.9756 33 1 8.2839 -8.4214 -2.4806 34 1 8.9902 -6.7885 -2.6909 35 1 9.2290 -8.6659 -0.2756 36 1 10.5357 -7.7895 -1.1390 37 1 8.9128 -7.3769 2.1314 38 1 10.7999 -4.8998 1.7574 39 1 10.3298 -5.6722 3.3650 40 1 11.3549 -7.8667 2.6102 41 1 11.8249 -7.0942 1.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413874823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:13 Heat of formation + Delta-G solvation = -40.446001 kcal Electronic energy + Delta-G solvation = -19572.899485 eV Core-core repulsion = 16578.512614 eV Total energy + Delta-G solvation = -2994.386871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91870 -38.81500 -36.47557 -34.29199 -32.42701 -30.71649 -29.04036 -28.60597 -25.62751 -24.66377 -22.73170 -21.88362 -20.78862 -20.09284 -19.85604 -17.87327 -16.50605 -16.33718 -15.88924 -15.48929 -15.11927 -14.94449 -14.76017 -14.15567 -13.82699 -13.58061 -13.25238 -13.00927 -12.78519 -12.61283 -12.05259 -11.84803 -11.81027 -11.44444 -11.36039 -11.25121 -11.07688 -10.99665 -10.92620 -10.71065 -10.58611 -10.39860 -10.10513 -9.83968 -9.46595 -8.99987 -8.90110 -8.48305 -6.90213 -6.27922 -3.99347 2.79697 3.02444 3.32658 3.36071 3.48494 3.51858 3.68927 4.18411 4.31086 4.34421 4.34775 4.67757 4.70107 4.75062 4.78289 4.96462 5.11156 5.11988 5.19897 5.22954 5.28112 5.34294 5.36512 5.41674 5.46339 5.61766 5.64442 5.67971 5.75996 5.81904 5.83999 5.85324 5.90971 6.00314 6.03695 6.09119 6.17229 6.59762 7.66681 7.95309 8.42733 8.54148 9.18404 10.81362 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032184 B = 0.003012 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.801542 B = 9294.371067 C = 9768.352583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.521 6.521 13 N -0.736 5.736 14 C 0.129 3.871 15 C -0.096 4.096 16 H 0.080 0.920 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.114 4.114 20 C -0.054 4.054 21 H 0.079 0.921 22 C -0.144 4.144 23 C -0.180 4.180 24 C -0.181 4.181 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.399 0.601 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.675 -18.487 0.301 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.396 6.396 13 N -0.390 5.390 14 C 0.005 3.995 15 C -0.115 4.115 16 H 0.098 0.902 17 C -0.163 4.163 18 C -0.163 4.163 19 C -0.152 4.152 20 C -0.073 4.073 21 H 0.097 0.903 22 C -0.162 4.162 23 C -0.217 4.217 24 C -0.218 4.218 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.232 0.768 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.793 -16.808 0.299 26.739 hybrid contribution -1.159 -0.690 0.047 1.350 sum 19.634 -17.497 0.346 26.302 Atomic orbital electron populations 1.69944 1.05918 1.27745 1.48166 1.24720 0.94457 0.98980 0.93198 0.86729 0.81904 0.83251 0.79930 1.19215 1.19962 1.15906 1.22324 0.88310 0.97523 1.58676 0.89404 1.84787 1.09217 1.00205 1.97421 1.23281 0.94173 1.04271 1.05747 1.20270 0.90527 0.82378 0.75316 1.90696 1.58812 1.42253 1.47832 1.45977 1.07599 1.07916 1.77508 1.21385 0.81313 0.94590 1.02178 1.22063 0.96084 0.94818 0.98516 0.90164 1.22280 0.97892 1.00161 0.95981 1.22352 0.95820 1.00544 0.97578 1.22482 0.99252 0.97737 0.95706 1.21559 0.94857 0.98226 0.92649 0.90270 1.22341 0.93886 1.03609 0.96359 1.23035 1.04357 0.93591 1.00744 1.22919 0.95909 0.99546 1.03378 0.91958 0.88559 0.88516 0.76763 0.91603 0.91714 0.91610 0.91120 0.91682 0.91609 0.91268 0.91652 0.87850 0.88670 0.88891 0.89043 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 2 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 10 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 11 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.52 -11.47 15.86 5.55 0.09 -11.38 16 13 N -0.74 -9.46 5.32 -60.30 -0.32 -9.78 16 14 C 0.13 1.47 4.70 -4.04 -0.02 1.45 16 15 C -0.10 -0.78 2.54 -89.50 -0.23 -1.01 16 16 H 0.08 0.63 7.65 -51.93 -0.40 0.24 16 17 C -0.13 -0.97 6.15 -25.61 -0.16 -1.12 16 18 C -0.13 -0.87 6.83 -25.07 -0.17 -1.04 16 19 C -0.11 -0.75 6.16 -24.74 -0.15 -0.90 16 20 C -0.05 -0.40 2.54 -88.96 -0.23 -0.63 16 21 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 22 C -0.14 -1.06 5.10 -90.62 -0.46 -1.52 16 23 C -0.18 -1.39 10.19 -26.70 -0.27 -1.67 16 24 C -0.18 -1.22 10.07 -26.70 -0.27 -1.49 16 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 27 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 28 H 0.40 4.03 8.33 -40.82 -0.34 3.69 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.63 7.60 -51.93 -0.39 0.23 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.06 -51.93 -0.42 0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.75 7.86 -51.93 -0.41 0.35 16 38 H 0.09 0.77 8.09 -51.93 -0.42 0.34 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -33.20 347.39 -9.54 -42.74 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.01 Total: 0.36 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.61 Total: -12.79 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.45 Total: -35.76 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.20 -9.54 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413874823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.295 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds