Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 119.99882 * 2 1 4 4 C 1.52997 * 109.46959 * 124.94253 * 3 2 1 5 5 C 1.52996 * 110.01762 * 60.19809 * 4 3 2 6 6 N 1.46499 * 109.47144 * 58.60735 * 5 4 3 7 7 C 1.34782 * 119.99763 * 185.17984 * 6 5 4 8 8 O 1.21284 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99840 * 180.02562 * 7 6 5 10 10 S 1.81002 * 109.47054 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00017 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99827 * 359.97438 * 11 10 9 13 13 C 1.38790 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.31636 * 120.00388 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00034 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47120 * 89.99590 * 15 13 11 17 17 H 1.48502 * 109.47113 * 209.99832 * 15 13 11 18 18 H 1.48506 * 109.46748 * 329.99609 * 15 13 11 19 19 C 1.54266 * 110.07232 * 298.77677 * 4 3 2 20 20 C 1.54893 * 104.19716 * 264.30242 * 19 4 3 21 21 C 1.54897 * 102.74856 * 322.06071 * 20 19 4 22 22 C 1.53881 * 110.02900 * 181.58724 * 4 3 2 23 23 H 1.08002 * 120.00109 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99914 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.00663 * 180.02562 * 2 1 3 26 26 H 1.09006 * 109.46620 * 4.94041 * 3 2 1 27 27 H 1.08997 * 109.46862 * 244.94808 * 3 2 1 28 28 H 1.08995 * 109.47359 * 178.61140 * 5 4 3 29 29 H 1.09004 * 109.46675 * 298.60794 * 5 4 3 30 30 H 0.96996 * 120.00521 * 5.17496 * 6 5 4 31 31 H 1.08995 * 109.46541 * 299.99459 * 9 7 6 32 32 H 1.08997 * 109.46859 * 59.99327 * 9 7 6 33 33 H 0.96993 * 120.00186 * 180.02562 * 14 13 11 34 34 H 1.08997 * 110.48438 * 145.62721 * 19 4 3 35 35 H 1.08993 * 110.48971 * 22.98310 * 19 4 3 36 36 H 1.08992 * 110.76058 * 203.74698 * 20 19 4 37 37 H 1.09002 * 110.75297 * 80.37253 * 20 19 4 38 38 H 1.09001 * 110.48497 * 156.61696 * 21 20 19 39 39 H 1.08993 * 110.48294 * 279.13292 * 21 20 19 40 40 H 1.08997 * 110.03422 * 0.04953 * 22 4 3 41 41 H 1.09003 * 110.02742 * 238.61634 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0340 1.3337 1.1824 5 6 4.0330 0.1807 1.0679 6 7 4.7665 0.2937 -0.1952 7 6 5.6300 -0.6740 -0.5619 8 8 5.8001 -1.6381 0.1541 9 6 6.3850 -0.5575 -1.8610 10 16 7.4567 -2.0015 -2.0675 11 6 8.1960 -1.6142 -3.6193 12 1 7.9292 -0.7018 -4.1319 13 6 9.1205 -2.4822 -4.1833 14 7 9.4454 -3.5945 -3.5588 15 14 9.9049 -2.0714 -5.8282 16 1 11.1475 -1.2901 -5.6027 17 1 10.2341 -3.3283 -6.5473 18 1 8.9566 -1.2692 -6.6422 19 6 2.2547 1.2280 2.5096 20 6 2.0812 2.6979 2.9664 21 6 3.4316 3.3421 2.5654 22 6 3.7822 2.6780 1.2178 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3583 2.1317 0.0885 27 1 2.6220 1.4022 -0.9310 28 1 4.7348 0.2240 1.9008 29 1 3.4972 -0.7682 1.0933 30 1 4.6307 1.0649 -0.7676 31 1 5.6778 -0.5081 -2.6889 32 1 6.9930 0.3470 -1.8479 33 1 10.0918 -4.2009 -3.9529 34 1 2.8291 0.6652 3.2454 35 1 1.2830 0.7624 2.3455 36 1 1.9325 2.7523 4.0447 37 1 1.2547 3.1719 2.4369 38 1 3.3186 4.4192 2.4418 39 1 4.1953 3.1226 3.3113 40 1 3.4532 3.3102 0.3932 41 1 4.8570 2.5087 1.1535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456482643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -43.668607 kcal Electronic energy + Delta-G solvation = -19954.739869 eV Core-core repulsion = 16960.213256 eV Total energy + Delta-G solvation = -2994.526614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15025 -38.50716 -34.80064 -34.01169 -32.41585 -30.74192 -29.00391 -28.92123 -26.29728 -25.46501 -24.26917 -21.34513 -20.10061 -19.92248 -18.86061 -17.80207 -16.48650 -16.14398 -15.76505 -15.45543 -14.91902 -14.79441 -14.76409 -13.93893 -13.86069 -13.59383 -13.42693 -12.96625 -12.67878 -12.56837 -12.19885 -11.82071 -11.58472 -11.36038 -11.33526 -11.07305 -11.05260 -11.01017 -10.83779 -10.76146 -10.66922 -10.57609 -9.79821 -9.44979 -9.34675 -9.05740 -8.79618 -8.21609 -6.48223 -6.20398 -3.90758 2.13520 3.07687 3.15165 3.23145 3.29062 3.33981 3.76184 4.21730 4.26563 4.30485 4.43565 4.79470 4.94187 5.00177 5.05537 5.14678 5.17537 5.21081 5.23368 5.27120 5.42989 5.57152 5.60339 5.63016 5.66249 5.70839 5.73365 5.83771 5.86993 5.89633 5.93540 6.07769 6.10994 6.12852 6.16311 6.50651 6.61640 6.69130 7.60715 7.76542 8.36443 8.66831 9.24886 10.87032 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.003237 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.939174 B = 8646.972966 C = 8870.759517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.081 4.081 4 C -0.067 4.067 5 C 0.132 3.868 6 N -0.736 5.736 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 14.482 10.016 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.068 4.068 5 C 0.008 3.992 6 N -0.391 5.391 7 C 0.317 3.683 8 O -0.394 6.394 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.152 4.152 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.159 4.159 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.448 12.693 11.215 23.610 hybrid contribution 0.256 1.685 -2.213 2.793 sum -16.192 14.377 9.002 23.451 Atomic orbital electron populations 1.23804 0.95906 1.01577 1.02446 1.23006 0.95938 0.98802 0.98495 1.20875 0.97614 0.95545 0.97819 1.21422 0.94662 0.94885 0.95798 1.21405 0.93271 0.98012 0.86465 1.46029 1.44899 1.24882 1.23267 1.20291 0.78766 0.81957 0.87327 1.90700 1.63867 1.30968 1.53817 1.23529 1.02791 1.07457 0.96627 1.85393 1.48529 1.21786 1.27676 1.22872 1.29051 1.10102 1.06342 0.90958 1.24990 0.95839 0.94464 0.98291 1.70019 1.31738 1.10246 1.38309 0.86172 0.79381 0.77967 0.82000 1.20275 1.20761 1.19698 1.22439 1.00308 0.96988 0.95445 1.22473 0.97430 0.95573 1.00577 1.22343 0.97309 0.99430 0.97041 1.22338 1.00622 0.95032 0.97940 0.88881 0.88661 0.87087 0.91250 0.90812 0.91872 0.91269 0.76939 0.89331 0.89327 0.92199 0.91172 0.90896 0.91666 0.91658 0.91838 0.91580 0.91477 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 14.17 29.02 0.41 -1.29 16 2 C -0.14 -1.37 7.65 -36.02 -0.28 -1.64 16 3 C -0.08 -0.68 4.31 -27.88 -0.12 -0.80 16 4 C -0.07 -0.58 0.40 -153.39 -0.06 -0.64 16 5 C 0.13 1.57 3.96 -4.04 -0.02 1.55 16 6 N -0.74 -9.81 4.83 -60.29 -0.29 -10.10 16 7 C 0.53 9.96 7.85 -10.98 -0.09 9.87 16 8 O -0.52 -11.92 15.86 5.55 0.09 -11.84 16 9 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.36 9.50 30.94 0.29 -15.06 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 15 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.11 -0.91 5.72 -25.07 -0.14 -1.05 16 20 C -0.12 -0.85 6.91 -24.73 -0.17 -1.02 16 21 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 22 C -0.12 -0.97 5.56 -25.61 -0.14 -1.11 16 23 H 0.09 0.69 7.84 -52.49 -0.41 0.28 16 24 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 25 H 0.11 1.22 6.89 -52.49 -0.36 0.86 16 26 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 27 H 0.07 0.63 6.93 -51.93 -0.36 0.27 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.91 6.65 -51.93 -0.35 0.56 16 30 H 0.40 4.25 7.05 -40.82 -0.29 3.96 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 32 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 35 H 0.07 0.58 6.72 -51.93 -0.35 0.23 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 41 H 0.07 0.65 7.47 -51.93 -0.39 0.26 16 LS Contribution 343.88 15.07 5.18 5.18 Total: -1.00 -33.33 343.88 -8.52 -41.85 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.64 Total: 1.02 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.36 Total: -13.14 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.44 Total: -35.69 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.33 -8.52 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456482643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.815 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds