Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.52993 * 109.46912 * 119.99506 * 2 1 3 5 5 C 1.50696 * 109.47462 * 300.00275 * 4 2 1 6 6 H 1.08001 * 119.99910 * 0.27783 * 5 4 2 7 7 C 1.37884 * 120.00008 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99934 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47537 * 60.00077 * 9 7 5 11 11 H 1.48502 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47478 * 299.99593 * 9 7 5 13 13 C 1.52995 * 109.46949 * 239.99703 * 2 1 3 14 14 N 1.46901 * 109.47292 * 45.97995 * 13 2 1 15 15 C 1.48556 * 111.00453 * 60.88611 * 14 13 2 16 16 C 1.54378 * 104.59569 * 159.04275 * 15 14 13 17 17 F 1.39902 * 110.31923 * 217.25041 * 16 15 14 18 18 F 1.39892 * 110.41099 * 95.08912 * 16 15 14 19 19 C 1.54261 * 105.05849 * 336.14489 * 16 15 14 20 20 F 1.39903 * 110.31964 * 241.10488 * 19 16 15 21 21 F 1.39897 * 110.40383 * 118.94590 * 19 16 15 22 22 C 1.48561 * 111.00114 * 176.30697 * 14 13 2 23 23 H 1.08996 * 109.47349 * 300.00221 * 1 2 3 24 24 H 1.09000 * 109.46955 * 60.00472 * 1 2 3 25 25 H 1.09004 * 109.47137 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46776 * 205.82478 * 3 2 1 27 27 H 1.08998 * 109.47476 * 325.82418 * 3 2 1 28 28 H 1.08999 * 109.47463 * 85.82486 * 3 2 1 29 29 H 1.08998 * 109.47249 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.46892 * 60.00251 * 4 2 1 31 31 H 0.97006 * 119.99805 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46842 * 165.97390 * 13 2 1 33 33 H 1.09001 * 109.47399 * 285.97194 * 13 2 1 34 34 H 1.09000 * 110.40695 * 277.82393 * 15 14 13 35 35 H 1.09001 * 110.41051 * 40.25862 * 15 14 13 36 36 H 1.09009 * 110.40856 * 319.73626 * 22 14 13 37 37 H 1.08996 * 110.41191 * 82.05424 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9130 0.8647 2.3805 7 6 1.8711 -0.4814 3.7320 8 7 2.6272 -1.5507 3.8527 9 14 1.2490 0.3996 5.2571 10 1 -0.2361 0.3997 5.2577 11 1 1.7438 -0.3004 6.4697 12 1 1.7440 1.7997 5.2566 13 6 2.0400 -0.7213 -1.2492 14 7 1.2958 -0.2501 -2.4248 15 6 1.4881 1.2090 -2.6271 16 6 1.1370 1.4456 -4.1117 17 9 1.9860 2.4107 -4.6639 18 9 -0.1980 1.8435 -4.2399 19 6 1.3579 0.0818 -4.7980 20 9 2.3461 0.1879 -5.7826 21 9 0.1627 -0.3816 -5.3582 22 6 1.8238 -0.8639 -3.6704 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.0332 1.4767 -0.4477 27 1 1.3595 2.0685 -0.5773 28 1 2.0906 1.8101 1.0249 29 1 3.1299 -0.7208 1.2495 30 1 1.6766 -1.7488 1.2493 31 1 2.8621 -1.8816 4.7338 32 1 3.1011 -0.5107 -1.3826 33 1 1.8945 -1.7953 -1.1335 34 1 0.8148 1.7740 -1.9825 35 1 2.5241 1.4865 -2.4325 36 1 2.9125 -0.9109 -3.6391 37 1 1.4051 -1.8605 -3.8102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459688160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -189.711297 kcal Electronic energy + Delta-G solvation = -23979.195869 eV Core-core repulsion = 19870.266453 eV Total energy + Delta-G solvation = -4108.929416 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.92403 -48.70017 -47.92134 -47.02047 -39.32955 -35.90538 -32.49658 -30.32645 -29.19963 -26.89932 -26.54594 -25.84302 -23.17449 -21.93503 -21.80883 -18.72299 -18.66341 -17.95664 -17.04437 -16.76830 -16.39854 -16.25826 -15.56192 -14.78025 -14.61238 -14.52765 -14.26862 -14.18658 -13.95096 -13.79633 -13.70678 -13.38896 -13.26293 -13.05372 -12.78871 -12.32283 -12.11085 -11.87813 -11.74428 -11.15535 -10.97730 -10.87492 -10.80906 -10.54967 -10.38896 -10.10023 -9.83748 -9.18351 -8.98408 -8.81464 -8.39006 -6.03978 -4.04667 2.45658 3.12615 3.24241 3.30335 3.31974 3.35637 3.37652 3.62795 4.04170 4.37843 4.42821 4.49235 4.98992 5.04235 5.20349 5.29592 5.31833 5.41338 5.42439 5.80919 5.91561 6.01445 6.26095 6.36293 6.43094 6.51189 6.70307 6.78031 7.07655 7.16273 7.18748 7.58804 7.72065 7.94581 8.37575 8.99924 9.58654 11.07464 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.004160 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.666667 B = 6728.537555 C = 6946.601210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.060 4.060 3 C -0.150 4.150 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.053 3.947 14 N -0.487 5.487 15 C -0.008 4.008 16 C 0.251 3.749 17 F -0.175 7.175 18 F -0.167 7.167 19 C 0.254 3.746 20 F -0.175 7.175 21 F -0.167 7.167 22 C -0.005 4.005 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.014 0.986 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 3.413 -15.871 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.060 4.060 3 C -0.207 4.207 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.073 4.073 14 N -0.211 5.211 15 C -0.136 4.136 16 C 0.212 3.788 17 F -0.156 7.156 18 F -0.147 7.147 19 C 0.216 3.784 20 F -0.156 7.156 21 F -0.148 7.148 22 C -0.133 4.133 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.383 3.169 -15.690 16.066 hybrid contribution 0.534 0.680 0.432 0.967 sum -0.848 3.849 -15.258 15.759 Atomic orbital electron populations 1.21665 0.94380 1.01269 1.00234 1.20686 0.96345 0.94944 0.94030 1.22355 0.98446 0.96425 1.03486 1.19116 0.96029 0.95244 0.89725 1.21153 1.31003 1.12271 0.90521 0.92245 1.24999 0.95283 0.95046 0.99079 1.69945 1.37005 1.23046 1.23562 0.86716 0.79250 0.79765 0.82618 1.20260 1.21410 1.20323 1.22732 0.94564 1.01195 0.88837 1.65739 1.52074 1.01687 1.01645 1.24757 1.04977 0.93839 0.90017 1.22687 0.74720 0.84835 0.96527 1.93087 1.70093 1.65256 1.87142 1.93101 1.33446 1.91397 1.96784 1.22542 0.75596 0.94780 0.85476 1.93088 1.61296 1.96649 1.64582 1.93102 1.45753 1.89384 1.86525 1.24180 1.01426 0.99341 0.88397 0.92338 0.93939 0.93574 0.94319 0.93890 0.90308 0.96723 0.96422 0.93001 0.93988 0.89472 0.84555 0.88997 0.89455 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 7.70 37.16 0.29 -1.79 16 2 C -0.06 -1.06 0.53 -154.51 -0.08 -1.14 16 3 C -0.15 -2.46 7.22 37.16 0.27 -2.20 16 4 C 0.04 0.84 3.99 -27.89 -0.11 0.73 16 5 C -0.51 -13.18 7.28 -34.44 -0.25 -13.43 16 6 H 0.06 1.49 5.97 -52.49 -0.31 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.75 13.29 55.43 0.74 -25.02 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 C 0.05 0.78 4.19 -3.83 -0.02 0.76 16 14 N -0.49 -6.24 4.34 -229.98 -1.00 -7.24 16 15 C -0.01 -0.09 3.89 -2.19 -0.01 -0.10 16 16 C 0.25 3.17 2.70 -25.35 -0.07 3.10 16 17 F -0.18 -2.27 16.48 2.25 0.04 -2.24 16 18 F -0.17 -2.32 16.49 2.25 0.04 -2.28 16 19 C 0.25 3.08 2.70 -25.35 -0.07 3.01 16 20 F -0.18 -2.17 16.48 2.25 0.04 -2.14 16 21 F -0.17 -2.22 16.49 2.25 0.04 -2.18 16 22 C 0.00 -0.05 6.08 -2.19 -0.01 -0.06 16 23 H 0.06 1.12 6.61 -51.93 -0.34 0.77 16 24 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.57 6.89 -51.93 -0.36 0.22 16 27 H 0.04 0.60 5.03 -51.93 -0.26 0.34 16 28 H 0.08 1.50 6.25 -51.93 -0.32 1.17 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.04 0.58 7.61 -51.93 -0.40 0.18 16 33 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.14 1.70 4.71 -51.93 -0.24 1.45 16 35 H 0.09 1.04 6.75 -51.93 -0.35 0.68 16 36 H 0.09 0.81 7.90 -51.92 -0.41 0.40 16 37 H 0.12 1.17 8.12 -51.93 -0.42 0.75 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -27.95 298.82 -5.35 -33.30 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.56 Total: -2.86 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.16 Total: -9.67 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: -0.26 Total: -32.25 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.15 Total: -8.84 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.95 -5.35 -33.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459688160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.415 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds