Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.52993 * 109.46912 * 119.99506 * 2 1 3 5 5 C 1.50696 * 109.47462 * 300.00275 * 4 2 1 6 6 H 1.08001 * 119.99910 * 0.27783 * 5 4 2 7 7 C 1.37884 * 120.00008 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99934 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99707 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47537 * 60.00077 * 9 7 5 11 11 H 1.48502 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47478 * 299.99593 * 9 7 5 13 13 C 1.52995 * 109.46949 * 239.99703 * 2 1 3 14 14 N 1.46901 * 109.47292 * 45.97995 * 13 2 1 15 15 C 1.48556 * 111.00453 * 60.88611 * 14 13 2 16 16 C 1.54378 * 104.59569 * 159.04275 * 15 14 13 17 17 F 1.39902 * 110.31923 * 217.25041 * 16 15 14 18 18 F 1.39892 * 110.41099 * 95.08912 * 16 15 14 19 19 C 1.54261 * 105.05849 * 336.14489 * 16 15 14 20 20 F 1.39903 * 110.31964 * 241.10488 * 19 16 15 21 21 F 1.39897 * 110.40383 * 118.94590 * 19 16 15 22 22 C 1.48561 * 111.00114 * 176.30697 * 14 13 2 23 23 H 1.08996 * 109.47349 * 300.00221 * 1 2 3 24 24 H 1.09000 * 109.46955 * 60.00472 * 1 2 3 25 25 H 1.09004 * 109.47137 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46776 * 205.82478 * 3 2 1 27 27 H 1.08998 * 109.47476 * 325.82418 * 3 2 1 28 28 H 1.08999 * 109.47463 * 85.82486 * 3 2 1 29 29 H 1.08998 * 109.47249 * 180.02562 * 4 2 1 30 30 H 1.09004 * 109.46892 * 60.00251 * 4 2 1 31 31 H 0.97006 * 119.99805 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46842 * 165.97390 * 13 2 1 33 33 H 1.09001 * 109.47399 * 285.97194 * 13 2 1 34 34 H 1.09000 * 110.40695 * 277.82393 * 15 14 13 35 35 H 1.09001 * 110.41051 * 40.25862 * 15 14 13 36 36 H 1.09009 * 110.40856 * 319.73626 * 22 14 13 37 37 H 1.08996 * 110.41191 * 82.05424 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9130 0.8647 2.3805 7 6 1.8711 -0.4814 3.7320 8 7 2.6272 -1.5507 3.8527 9 14 1.2490 0.3996 5.2571 10 1 -0.2361 0.3997 5.2577 11 1 1.7438 -0.3004 6.4697 12 1 1.7440 1.7997 5.2566 13 6 2.0400 -0.7213 -1.2492 14 7 1.2958 -0.2501 -2.4248 15 6 1.4881 1.2090 -2.6271 16 6 1.1370 1.4456 -4.1117 17 9 1.9860 2.4107 -4.6639 18 9 -0.1980 1.8435 -4.2399 19 6 1.3579 0.0818 -4.7980 20 9 2.3461 0.1879 -5.7826 21 9 0.1627 -0.3816 -5.3582 22 6 1.8238 -0.8639 -3.6704 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.0332 1.4767 -0.4477 27 1 1.3595 2.0685 -0.5773 28 1 2.0906 1.8101 1.0249 29 1 3.1299 -0.7208 1.2495 30 1 1.6766 -1.7488 1.2493 31 1 2.8621 -1.8816 4.7338 32 1 3.1011 -0.5107 -1.3826 33 1 1.8945 -1.7953 -1.1335 34 1 0.8148 1.7740 -1.9825 35 1 2.5241 1.4865 -2.4325 36 1 2.9125 -0.9109 -3.6391 37 1 1.4051 -1.8605 -3.8102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459688160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -205.670511 kcal Electronic energy + Delta-G solvation = -23979.887913 eV Core-core repulsion = 19870.266453 eV Total energy + Delta-G solvation = -4109.621460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.90578 -49.68735 -48.91298 -48.01492 -40.47157 -37.28412 -34.43385 -31.46639 -30.29770 -28.61631 -27.88833 -27.07812 -24.82973 -23.08586 -22.79352 -19.93984 -19.67438 -19.13780 -18.28706 -18.03050 -17.72918 -17.40883 -16.69988 -16.40334 -15.71637 -15.60351 -15.42382 -15.24890 -15.10509 -14.81021 -14.71274 -14.67495 -14.46491 -14.38066 -14.07562 -13.86822 -13.42233 -13.10475 -12.97013 -12.71281 -12.65049 -12.44318 -12.15570 -12.08409 -11.87866 -11.71057 -11.35848 -10.85446 -10.72261 -10.46318 -9.81123 -8.11640 -6.17134 1.43910 1.44724 1.50724 1.51813 2.13461 2.29952 2.38524 2.46458 2.66660 3.07021 3.23337 3.44136 3.57528 3.90736 4.08503 4.21777 4.25657 4.33108 4.42049 4.49619 4.68562 4.76486 4.92803 5.02726 5.13519 5.26727 5.35729 5.53192 5.56310 5.61063 5.66457 5.71770 5.92763 5.96151 6.37897 6.97816 7.49847 9.00114 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035721 B = 0.004160 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.666667 B = 6728.537555 C = 6946.601210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.056 4.056 3 C -0.146 4.146 4 C 0.042 3.958 5 C -0.513 4.513 6 H 0.065 0.935 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.064 3.936 14 N -0.495 5.495 15 C -0.007 4.007 16 C 0.249 3.751 17 F -0.177 7.177 18 F -0.176 7.176 19 C 0.254 3.746 20 F -0.177 7.177 21 F -0.175 7.175 22 C 0.000 4.000 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.049 0.951 29 H -0.009 1.009 30 H -0.011 1.011 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 4.330 -16.865 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.203 4.203 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.194 1.194 13 C -0.063 4.063 14 N -0.220 5.220 15 C -0.135 4.135 16 C 0.211 3.789 17 F -0.158 7.158 18 F -0.157 7.157 19 C 0.216 3.784 20 F -0.157 7.157 21 F -0.156 7.156 22 C -0.128 4.128 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.547 4.103 -16.700 17.266 hybrid contribution 0.576 0.400 0.671 0.971 sum -0.971 4.503 -16.028 16.677 Atomic orbital electron populations 1.21581 0.94220 1.00641 1.00326 1.20507 0.96362 0.95593 0.93137 1.22299 1.00136 0.95560 1.02299 1.18987 0.94403 0.94185 0.92001 1.21583 1.30008 1.12075 0.91487 0.91689 1.25820 0.95771 0.95838 1.02298 1.70078 1.38816 1.24794 1.24006 0.85732 0.78860 0.78880 0.78965 1.19603 1.21604 1.19375 1.22445 0.95200 1.00493 0.88122 1.65635 1.52181 1.02271 1.01875 1.24767 1.05790 0.93367 0.89591 1.22787 0.74243 0.84976 0.96896 1.93084 1.70084 1.65421 1.87208 1.93084 1.34185 1.91528 1.96854 1.22638 0.75297 0.94761 0.85692 1.93088 1.61265 1.96655 1.64723 1.93089 1.46336 1.89442 1.86719 1.24257 1.02738 0.99329 0.86467 0.94317 0.91603 0.94587 0.92688 0.91174 0.93233 0.99044 0.99241 0.93236 0.92748 0.89877 0.84712 0.87567 0.87385 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.76 7.70 71.98 0.55 -3.20 16 2 C -0.06 -1.91 0.53 -52.18 -0.03 -1.94 16 3 C -0.15 -4.51 7.22 71.98 0.52 -3.99 16 4 C 0.04 1.97 3.99 29.84 0.12 2.09 16 5 C -0.51 -26.70 7.28 25.60 0.19 -26.52 16 6 H 0.07 3.25 5.97 -2.91 -0.02 3.23 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.94 -54.92 13.29 21.45 0.28 -54.63 16 9 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.06 1.74 4.19 86.30 0.36 2.10 16 14 N -0.50 -11.31 4.34 -881.52 -3.82 -15.14 16 15 C -0.01 -0.15 3.89 86.45 0.34 0.18 16 16 C 0.25 5.68 2.70 31.49 0.08 5.76 16 17 F -0.18 -4.18 16.48 44.97 0.74 -3.44 16 18 F -0.18 -4.54 16.49 44.97 0.74 -3.80 16 19 C 0.25 5.52 2.70 31.49 0.08 5.61 16 20 F -0.18 -3.95 16.48 44.97 0.74 -3.21 16 21 F -0.18 -4.30 16.49 44.97 0.74 -3.56 16 22 C 0.00 0.01 6.08 86.45 0.53 0.53 16 23 H 0.04 1.44 6.61 -2.39 -0.02 1.43 16 24 H 0.07 1.92 6.03 -2.39 -0.01 1.91 16 25 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.05 1.50 6.89 -2.39 -0.02 1.48 16 27 H 0.07 1.78 5.03 -2.39 -0.01 1.77 16 28 H 0.05 1.83 6.25 -2.39 -0.01 1.81 16 29 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 31 H 0.26 14.54 8.31 -92.70 -0.77 13.76 16 32 H 0.05 1.35 7.61 -2.38 -0.02 1.33 16 33 H 0.08 2.34 8.07 -2.39 -0.02 2.32 16 34 H 0.14 2.92 4.71 -2.39 -0.01 2.91 16 35 H 0.11 2.00 6.75 -2.39 -0.02 1.98 16 36 H 0.11 1.60 7.90 -2.38 -0.02 1.58 16 37 H 0.14 2.18 8.12 -2.39 -0.02 2.16 16 Total: -1.00 -60.19 298.82 5.76 -54.43 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.10 Total: 3.32 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.21 Total: -18.93 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -3.54 Total: -69.77 kcal Atomic # 9 Polarization: -16.98 SS G_CDS: 2.96 Total: -14.02 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -60.19 5.76 -54.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459688160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.236 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds