Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47105 * 85.89858 * 3 2 1 5 5 C 1.36716 * 120.00117 * 269.99441 * 4 3 2 6 6 H 1.08000 * 119.99665 * 42.10831 * 5 4 3 7 7 C 1.39122 * 120.00079 * 222.10913 * 5 4 3 8 8 N 1.31322 * 120.00214 * 16.38920 * 7 5 4 9 9 Si 1.86803 * 120.00031 * 196.38443 * 7 5 4 10 10 H 1.48504 * 109.46903 * 60.00185 * 9 7 5 11 11 H 1.48499 * 109.47217 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47151 * 300.00453 * 9 7 5 13 13 C 1.34785 * 120.00341 * 89.99604 * 4 3 2 14 14 O 1.21753 * 120.00061 * 175.33723 * 13 4 3 15 15 C 1.46226 * 119.99801 * 355.33600 * 13 4 3 16 16 C 1.34975 * 120.00081 * 184.41023 * 15 13 4 17 17 C 1.47150 * 120.00059 * 185.37584 * 16 15 13 18 18 C 1.39872 * 120.16992 * 354.65627 * 17 16 15 19 19 C 1.37882 * 119.81862 * 180.02562 * 18 17 16 20 20 C 1.50705 * 119.91135 * 180.25409 * 19 18 17 21 21 C 1.38408 * 120.17378 * 359.97438 * 19 18 17 22 22 C 1.38408 * 120.35494 * 359.97438 * 21 19 18 23 23 C 1.50697 * 119.91477 * 180.02562 * 22 21 19 24 24 C 1.37882 * 120.17354 * 0.02562 * 22 21 19 25 25 H 4.40637 * 5.51366 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47728 * 325.89361 * 3 2 1 27 27 H 1.09005 * 109.46942 * 205.89018 * 3 2 1 28 28 H 0.96997 * 119.99987 * 184.89263 * 8 7 5 29 29 H 1.07998 * 119.99932 * 4.40927 * 15 13 4 30 30 H 1.07994 * 119.99940 * 5.37701 * 16 15 13 31 31 H 1.08006 * 120.09088 * 0.04405 * 18 17 16 32 32 H 1.08996 * 109.46647 * 269.72412 * 20 19 18 33 33 H 1.09003 * 109.47264 * 29.72221 * 20 19 18 34 34 H 1.09000 * 109.47065 * 149.72405 * 20 19 18 35 35 H 1.08003 * 119.82314 * 179.97438 * 21 19 18 36 36 H 1.09007 * 109.47273 * 89.99864 * 23 22 21 37 37 H 1.08998 * 109.47379 * 209.99699 * 23 22 21 38 38 H 1.08999 * 109.47375 * 329.99849 * 23 22 21 39 39 H 1.07997 * 120.08648 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0979 -1.3776 5 6 3.3629 -1.3248 -1.9358 6 1 2.6617 -2.1303 -1.7748 7 6 4.4987 -1.5357 -2.7111 8 7 5.5008 -0.6891 -2.6516 9 14 4.5983 -3.0233 -3.8365 10 1 3.4928 -2.9697 -4.8267 11 1 5.9016 -3.0192 -4.5482 12 1 4.4796 -4.2639 -3.0289 13 6 3.3585 1.0210 -2.0950 14 8 3.8441 0.9430 -3.2087 15 6 3.0182 2.3285 -1.5355 16 6 3.1591 3.4412 -2.2864 17 6 2.9306 4.7661 -1.6884 18 6 2.4597 4.8732 -0.3757 19 6 2.2477 6.1183 0.1772 20 6 1.7458 6.2361 1.5934 21 6 2.5000 7.2603 -0.5629 22 6 2.9671 7.1628 -1.8621 23 6 3.2391 8.4127 -2.6588 24 6 3.1843 5.9250 -2.4294 25 1 -1.0500 0.0002 0.0000 26 1 3.0098 -0.8500 0.5762 27 1 3.0089 0.9254 0.4488 28 1 6.2619 -0.7963 -3.2433 29 1 2.6542 2.4038 -0.5216 30 1 3.4395 3.3591 -3.3261 31 1 2.2630 3.9829 0.2033 32 1 0.6560 6.2565 1.5920 33 1 2.0925 5.3813 2.1741 34 1 2.1258 7.1558 2.0382 35 1 2.3315 8.2328 -0.1243 36 1 4.2720 8.7248 -2.5039 37 1 3.0753 8.2117 -3.7174 38 1 2.5670 9.2059 -2.3313 39 1 3.5484 5.8505 -3.4434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = 69.132384 kcal Electronic energy + Delta-G solvation = -20986.726852 eV Core-core repulsion = 17861.647706 eV Total energy + Delta-G solvation = -3125.079147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.43536 -38.35289 -34.85068 -33.96981 -33.49465 -32.53819 -31.26192 -29.78614 -27.29080 -26.60015 -26.49780 -25.07632 -22.97965 -20.71659 -20.28727 -18.28635 -17.78575 -16.99453 -16.19757 -15.86556 -15.17484 -14.90400 -14.25520 -14.06182 -13.96222 -13.94138 -13.25975 -13.08162 -12.85770 -12.73514 -12.57959 -12.50325 -12.39321 -11.94352 -11.76048 -11.38007 -11.32589 -10.96390 -10.88060 -10.68348 -10.63734 -10.32570 -9.94107 -9.66873 -9.55151 -8.86873 -8.48321 -8.11559 -7.75393 -7.21000 -6.10055 -3.89523 1.01624 1.48830 2.58992 3.25377 3.32515 3.36980 3.38074 3.43430 3.96961 4.33004 4.72453 4.78234 4.79715 4.86027 5.04660 5.17836 5.21245 5.31196 5.32254 5.40834 5.52231 5.55827 5.58601 5.64886 5.69601 5.80389 5.83297 5.98450 6.16001 6.17145 6.29258 6.33876 6.47319 6.51865 6.63319 6.67793 7.03513 7.11417 7.18089 7.58494 8.13819 8.23165 8.99172 9.12857 9.58938 10.26235 10.94292 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.004258 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.674142 B = 6575.035365 C = 7642.157659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.203 3.797 4 N -0.440 5.440 5 C -0.344 4.344 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.814 5.814 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.488 3.512 14 O -0.523 6.523 15 C -0.152 4.152 16 C -0.093 4.093 17 C -0.032 4.032 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.117 4.117 25 H 0.210 0.790 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.266 0.734 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.167 13.960 6.748 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.175 4.175 3 C 0.079 3.921 4 N -0.160 5.160 5 C -0.471 4.471 6 H 0.098 0.902 7 C -0.146 4.146 8 N -0.447 5.447 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.278 3.722 14 O -0.401 6.401 15 C -0.173 4.173 16 C -0.113 4.113 17 C -0.033 4.033 18 C -0.139 4.139 19 C -0.083 4.083 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.085 4.085 23 C -0.169 4.169 24 C -0.135 4.135 25 H 0.227 0.773 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.643 13.896 6.146 16.208 hybrid contribution -0.177 -0.722 -0.457 0.873 sum -5.820 13.174 5.689 15.485 Atomic orbital electron populations 1.24717 0.95731 1.03064 1.01577 1.24285 0.95443 0.98624 0.99139 1.18613 0.82849 1.02407 0.88212 1.43132 1.58789 1.05963 1.08163 1.19049 1.05608 0.88648 1.33784 0.90168 1.25236 0.93611 0.97482 0.98281 1.69863 1.05496 1.35663 1.33658 0.86277 0.77525 0.81525 0.80791 1.20034 1.21077 1.20207 1.17789 0.84593 0.83503 0.86282 1.90656 1.43432 1.86088 1.19929 1.23514 0.99757 0.94484 0.99573 1.22056 0.99393 0.89655 1.00210 1.19143 0.97374 0.93259 0.93482 1.21279 1.00623 0.97059 0.94975 1.19776 0.99257 0.93001 0.96287 1.20780 1.01075 1.02549 0.92543 1.20874 1.02199 0.97707 0.94103 1.19772 0.99183 0.94920 0.94650 1.20769 1.01840 0.94752 0.99503 1.21196 1.01221 0.91151 0.99916 0.77336 0.88651 0.90039 0.92351 0.87049 0.85289 0.85819 0.91319 0.91463 0.91764 0.86552 0.91314 0.91566 0.91804 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.85 19.25 29.55 0.57 -3.28 16 2 C -0.17 -3.27 13.64 -37.12 -0.51 -3.77 16 3 C 0.20 4.06 5.49 -6.83 -0.04 4.02 16 4 N -0.44 -11.21 2.47 -119.60 -0.30 -11.51 16 5 C -0.34 -9.55 9.27 -15.05 -0.14 -9.69 16 6 H 0.08 2.15 7.89 -52.49 -0.41 1.74 16 7 C 0.07 1.86 4.46 -17.44 -0.08 1.78 16 8 N -0.81 -24.23 11.20 55.50 0.62 -23.61 16 9 Si 0.91 21.88 29.59 -169.99 -5.03 16.85 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.49 12.80 6.97 -13.05 -0.09 12.70 16 14 O -0.52 -15.78 13.44 5.14 0.07 -15.71 16 15 C -0.15 -3.18 8.58 -37.53 -0.32 -3.50 16 16 C -0.09 -1.79 9.45 -37.13 -0.35 -2.14 16 17 C -0.03 -0.53 5.86 -105.06 -0.62 -1.15 16 18 C -0.12 -1.80 9.06 -39.10 -0.35 -2.15 16 19 C -0.08 -1.06 5.87 -104.69 -0.61 -1.67 16 20 C -0.11 -1.09 10.01 36.01 0.36 -0.72 16 21 C -0.13 -1.57 9.34 -39.46 -0.37 -1.94 16 22 C -0.09 -1.07 5.87 -104.69 -0.61 -1.68 16 23 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 24 C -0.12 -1.69 9.44 -39.10 -0.37 -2.06 16 25 H 0.21 2.59 7.80 -54.09 -0.42 2.16 16 26 H 0.10 1.81 8.04 -51.93 -0.42 1.39 16 27 H 0.08 1.43 6.25 -51.93 -0.32 1.10 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.11 2.02 4.31 -52.49 -0.23 1.79 16 30 H 0.13 2.65 7.55 -52.49 -0.40 2.25 16 31 H 0.12 1.75 6.19 -52.48 -0.32 1.42 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -33.69 341.67 -7.69 -41.38 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.03 Total: 3.39 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.17 Total: -15.95 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.33 Total: -35.12 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.07 Total: -15.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.69 -7.69 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.513 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds