Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47188 * 42.52950 * 3 2 1 5 5 C 1.36715 * 120.00166 * 262.35109 * 4 3 2 6 6 H 1.08000 * 120.00111 * 212.67404 * 5 4 3 7 7 C 1.39126 * 119.99536 * 32.68096 * 5 4 3 8 8 N 1.31322 * 120.00689 * 5.89256 * 7 5 4 9 9 Si 1.86808 * 119.99602 * 185.89797 * 7 5 4 10 10 H 1.48494 * 109.47221 * 89.99837 * 9 7 5 11 11 H 1.48505 * 109.46957 * 209.99737 * 9 7 5 12 12 H 1.48499 * 109.47017 * 329.99605 * 9 7 5 13 13 C 1.34776 * 119.99766 * 82.35323 * 4 3 2 14 14 O 1.21762 * 119.99774 * 179.97438 * 13 4 3 15 15 C 1.46220 * 120.00140 * 359.97438 * 13 4 3 16 16 C 1.34977 * 120.00132 * 186.77490 * 15 13 4 17 17 C 1.47142 * 120.00009 * 15.05299 * 16 15 13 18 18 C 1.39882 * 120.17587 * 218.33675 * 17 16 15 19 19 C 1.37878 * 119.82456 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.91414 * 179.97438 * 19 18 17 21 21 C 1.38413 * 120.17167 * 0.02562 * 19 18 17 22 22 C 1.38412 * 120.35402 * 359.97438 * 21 19 18 23 23 C 1.50700 * 119.91014 * 179.97438 * 22 21 19 24 24 C 1.37875 * 120.17468 * 0.02562 * 22 21 19 25 25 H 4.40637 * 5.51330 * 180.02562 * 4 1 2 26 26 H 1.09008 * 109.46740 * 282.53124 * 3 2 1 27 27 H 1.09000 * 109.47320 * 162.53289 * 3 2 1 28 28 H 0.96997 * 120.00517 * 180.02562 * 8 7 5 29 29 H 1.08001 * 120.00218 * 6.77179 * 15 13 4 30 30 H 1.08005 * 120.00492 * 195.05758 * 16 15 13 31 31 H 1.07998 * 120.08560 * 0.24999 * 18 17 16 32 32 H 1.09001 * 109.46847 * 89.99413 * 20 19 18 33 33 H 1.08997 * 109.47219 * 209.99609 * 20 19 18 34 34 H 1.09000 * 109.46920 * 330.00051 * 20 19 18 35 35 H 1.07997 * 119.82011 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.47016 * 90.00208 * 23 22 21 37 37 H 1.09002 * 109.46888 * 209.99303 * 23 22 21 38 38 H 1.09000 * 109.47665 * 329.99567 * 23 22 21 39 39 H 1.08003 * 120.09031 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0169 -0.9336 5 6 3.5118 -2.2462 -0.4690 6 1 4.3104 -2.7860 -0.9562 7 6 2.8665 -2.8019 0.6312 8 7 1.8213 -2.2012 1.1520 9 14 3.4871 -4.4025 1.3677 10 1 4.4923 -4.1064 2.4198 11 1 2.3492 -5.1462 1.9656 12 1 4.1129 -5.2274 0.3032 13 6 3.2129 -0.7412 -2.2506 14 8 3.6196 -1.5869 -3.0265 15 6 2.8092 0.5733 -2.7475 16 6 2.7567 0.8057 -4.0761 17 6 2.7770 -0.3217 -5.0215 18 6 3.4855 -0.2189 -6.2232 19 6 3.5000 -1.2800 -7.1036 20 6 4.2622 -1.1712 -8.3991 21 6 2.8155 -2.4443 -6.8011 22 6 2.1121 -2.5539 -5.6141 23 6 1.3699 -3.8260 -5.2951 24 6 2.0878 -1.5018 -4.7233 25 1 -1.0498 -0.0001 -0.0003 26 1 3.0094 -0.2222 1.0033 27 1 3.0090 0.9811 -0.3085 28 1 1.3716 -2.5884 1.9192 29 1 2.5529 1.3584 -2.0516 30 1 2.6999 1.8190 -4.4454 31 1 4.0234 0.6875 -6.4588 32 1 5.2849 -1.5171 -8.2490 33 1 3.7784 -1.7861 -9.1580 34 1 4.2746 -0.1319 -8.7271 35 1 2.8304 -3.2718 -7.4949 36 1 2.0294 -4.5060 -4.7557 37 1 0.5021 -3.5952 -4.6771 38 1 1.0412 -4.2971 -6.2214 39 1 1.5388 -1.5889 -3.7972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490961449.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = 76.992344 kcal Electronic energy + Delta-G solvation = -21844.695666 eV Core-core repulsion = 18719.957352 eV Total energy + Delta-G solvation = -3124.738313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.35362 -38.24633 -35.34843 -33.41996 -33.02369 -32.11800 -31.21614 -29.74616 -26.89557 -26.47376 -26.13120 -25.07518 -22.86232 -20.49419 -20.16453 -18.03592 -17.63136 -16.65457 -16.46855 -15.72994 -15.04167 -14.77822 -14.22230 -13.95075 -13.67956 -13.55355 -12.98983 -12.83371 -12.74350 -12.63946 -12.30585 -12.26546 -12.10643 -11.75773 -11.57274 -11.47616 -11.10408 -11.03110 -10.64234 -10.50891 -10.46636 -10.37362 -9.44103 -9.27040 -9.09905 -8.85689 -8.50204 -7.98187 -7.67883 -7.24463 -6.33774 -3.98762 1.34757 2.05077 2.55740 3.15676 3.22152 3.27619 3.79949 4.05354 4.17250 4.39044 4.44456 5.01303 5.08699 5.20561 5.21543 5.32506 5.49587 5.61663 5.62471 5.74068 5.78837 5.80157 5.91286 6.05218 6.06150 6.08447 6.17461 6.30904 6.34325 6.61893 6.65747 6.70419 6.79534 6.87392 7.04361 7.09232 7.19349 7.33568 7.48294 7.64661 8.13718 8.43223 8.85678 9.13113 9.29587 9.94612 10.64462 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.005504 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.241989 B = 5085.589046 C = 5783.825076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.108 4.108 3 C 0.231 3.769 4 N -0.428 5.428 5 C -0.307 4.307 6 H 0.098 0.902 7 C 0.035 3.965 8 N -0.861 5.861 9 Si 0.925 3.075 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.471 3.529 14 O -0.563 6.563 15 C -0.176 4.176 16 C -0.078 4.078 17 C -0.045 4.045 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.106 4.106 24 C -0.023 4.023 25 H 0.197 0.803 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.270 0.730 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 4.706 -8.983 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.110 4.110 3 C 0.108 3.892 4 N -0.145 5.145 5 C -0.435 4.435 6 H 0.116 0.884 7 C -0.170 4.170 8 N -0.498 5.498 9 Si 0.751 3.249 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.262 3.738 14 O -0.448 6.448 15 C -0.197 4.197 16 C -0.099 4.099 17 C -0.045 4.045 18 C -0.132 4.132 19 C -0.111 4.111 20 C -0.161 4.161 21 C -0.136 4.136 22 C -0.101 4.101 23 C -0.163 4.163 24 C -0.042 4.042 25 H 0.214 0.786 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.386 4.206 -9.127 10.057 hybrid contribution -0.066 -0.754 0.890 1.168 sum -0.452 3.452 -8.238 8.943 Atomic orbital electron populations 1.24201 0.95313 1.05027 1.03612 1.23053 0.94239 0.96138 0.97553 1.18249 0.84429 0.90117 0.96418 1.43558 1.54574 1.12236 1.04164 1.19562 1.16922 0.94113 1.12870 0.88434 1.25513 0.94686 0.98987 0.97860 1.69878 1.17784 1.39194 1.22960 0.85948 0.78201 0.81594 0.79137 1.20305 1.20902 1.19321 1.18115 0.85089 0.88059 0.82488 1.90730 1.50957 1.49112 1.54023 1.23342 1.01883 0.98509 0.95944 1.22060 0.98501 0.96792 0.92570 1.18770 0.97970 0.94253 0.93506 1.20929 1.00083 0.98325 0.93886 1.19530 1.00201 0.94530 0.96794 1.20674 0.99427 1.01732 0.94315 1.20756 0.98894 0.96921 0.97029 1.19647 0.99708 0.96062 0.94649 1.20687 0.99584 0.95033 1.00990 1.21034 0.96306 0.91087 0.95744 0.78576 0.87907 0.91978 0.91965 0.86167 0.85998 0.86995 0.91898 0.92257 0.92205 0.87258 0.91343 0.92019 0.92525 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.42 19.24 29.55 0.57 -4.85 16 2 C -0.11 -2.39 10.81 -37.12 -0.40 -2.79 16 3 C 0.23 5.02 4.80 -6.83 -0.03 4.99 16 4 N -0.43 -10.64 2.57 -119.59 -0.31 -10.95 16 5 C -0.31 -8.24 9.05 -15.04 -0.14 -8.38 16 6 H 0.10 2.76 7.59 -52.49 -0.40 2.36 16 7 C 0.03 0.89 5.15 -17.44 -0.09 0.80 16 8 N -0.86 -22.26 9.34 55.51 0.52 -21.75 16 9 Si 0.92 20.41 29.56 -169.99 -5.02 15.38 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.47 11.34 6.33 -13.06 -0.08 11.26 16 14 O -0.56 -15.04 12.06 5.13 0.06 -14.97 16 15 C -0.18 -3.42 8.86 -37.54 -0.33 -3.75 16 16 C -0.08 -1.38 9.83 -37.13 -0.36 -1.74 16 17 C -0.04 -0.86 4.65 -105.06 -0.49 -1.35 16 18 C -0.11 -1.94 9.44 -39.10 -0.37 -2.31 16 19 C -0.11 -1.77 5.87 -104.69 -0.61 -2.39 16 20 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 21 C -0.12 -1.98 9.35 -39.45 -0.37 -2.35 16 22 C -0.10 -1.89 5.87 -104.69 -0.61 -2.50 16 23 C -0.11 -1.75 10.01 36.01 0.36 -1.39 16 24 C -0.02 -0.48 6.28 -39.10 -0.25 -0.73 16 25 H 0.20 3.34 7.80 -54.10 -0.42 2.92 16 26 H 0.10 2.34 6.98 -51.92 -0.36 1.97 16 27 H 0.06 1.13 6.47 -51.93 -0.34 0.79 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 29 H 0.12 2.04 6.24 -52.49 -0.33 1.72 16 30 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.12 2.67 6.72 -52.48 -0.35 2.32 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -30.51 333.27 -7.71 -38.22 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.13 Total: 7.42 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.85 Total: -18.38 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.21 Total: -32.70 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.06 Total: -14.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.51 -7.71 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490961449.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.214 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds