Wall clock time and date at job start Tue Mar 31 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47391 * 53.97983 * 3 2 1 5 5 C 1.37095 * 119.99812 * 257.25485 * 4 3 2 6 6 H 1.08001 * 119.99959 * 250.53580 * 5 4 3 7 7 C 1.38952 * 120.00293 * 70.54103 * 5 4 3 8 8 N 1.31410 * 119.99997 * 167.29164 * 7 5 4 9 9 Si 1.86803 * 119.99784 * 347.01386 * 7 5 4 10 10 H 1.48497 * 109.47268 * 53.91492 * 9 7 5 11 11 H 1.48493 * 109.46897 * 173.92138 * 9 7 5 12 12 H 1.48503 * 109.46673 * 293.91644 * 9 7 5 13 13 C 1.34778 * 119.99901 * 77.25052 * 4 3 2 14 14 O 1.21292 * 119.99825 * 185.36853 * 13 4 3 15 15 C 1.50696 * 120.00173 * 5.37311 * 13 4 3 16 16 C 1.50698 * 115.54874 * 282.28548 * 15 13 4 17 17 C 1.38263 * 119.99929 * 114.60210 * 16 15 13 18 18 C 1.38212 * 119.99783 * 179.74424 * 17 16 15 19 19 C 1.38257 * 119.99983 * 0.52661 * 18 17 16 20 20 C 1.38213 * 120.00143 * 359.74597 * 19 18 17 21 21 C 1.38207 * 120.00218 * 294.87367 * 16 15 13 22 22 C 1.50701 * 119.99714 * 0.02562 * 21 16 15 23 23 C 1.52997 * 117.50113 * 136.57524 * 15 13 4 24 24 C 1.52991 * 60.00226 * 252.51154 * 23 15 13 25 25 H 4.40641 * 5.51515 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47416 * 293.97831 * 3 2 1 27 27 H 1.08999 * 109.47273 * 173.98009 * 3 2 1 28 28 H 0.97007 * 119.99659 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.00355 * 359.97438 * 17 16 15 30 30 H 1.08003 * 119.99959 * 180.29203 * 18 17 16 31 31 H 1.07999 * 119.99923 * 179.76680 * 19 18 17 32 32 H 1.08001 * 119.99841 * 179.97438 * 20 19 18 33 33 H 1.08994 * 109.47372 * 83.50397 * 22 21 16 34 34 H 1.09004 * 109.47140 * 203.50181 * 22 21 16 35 35 H 1.08998 * 109.47367 * 323.49914 * 22 21 16 36 36 H 1.09007 * 117.49881 * 0.02562 * 23 15 13 37 37 H 1.09003 * 117.50254 * 145.01954 * 23 15 13 38 38 H 1.09002 * 117.50173 * 252.50635 * 24 23 15 39 39 H 1.09007 * 117.49990 * 107.48893 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8114 -1.1171 5 6 3.6107 -2.0765 -0.8882 6 1 4.6666 -2.2819 -0.9849 7 6 2.7348 -3.0945 -0.5317 8 7 3.1367 -4.3454 -0.5552 9 14 0.9881 -2.6843 -0.0116 10 1 0.3403 -1.8575 -1.0614 11 1 0.2189 -3.9408 0.1738 12 1 1.0169 -1.9283 1.2663 13 6 3.1163 -0.3147 -2.3699 14 8 3.4288 -1.0195 -3.3063 15 6 2.7075 1.1162 -2.6073 16 6 1.2256 1.3854 -2.5589 17 6 0.7010 2.1884 -1.5630 18 6 -0.6575 2.4395 -1.5217 19 6 -1.4932 1.8790 -2.4698 20 6 -0.9696 1.0717 -3.4620 21 6 0.3901 0.8251 -3.5066 22 6 0.9610 -0.0556 -4.5880 23 6 3.5429 1.9353 -3.5932 24 6 3.6419 2.2126 -2.0918 25 1 -1.0499 0.0000 -0.0004 26 1 3.0095 -0.4168 0.9389 27 1 3.0088 1.0228 -0.1078 28 1 2.5251 -5.0561 -0.3067 29 1 1.3532 2.6224 -0.8196 30 1 -1.0666 3.0706 -0.7466 31 1 -2.5552 2.0722 -2.4353 32 1 -1.6225 0.6336 -4.2023 33 1 1.0759 -1.0704 -4.2073 34 1 0.2867 -0.0629 -5.4444 35 1 1.9334 0.3297 -4.8947 36 1 4.3880 1.4391 -4.0705 37 1 3.0207 2.6691 -4.2072 38 1 3.1848 3.1288 -1.7180 39 1 4.5524 1.8989 -1.5810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:39 Heat of formation + Delta-G solvation = 99.283667 kcal Electronic energy + Delta-G solvation = -23406.966216 eV Core-core repulsion = 20283.194527 eV Total energy + Delta-G solvation = -3123.771689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29687 -38.28380 -36.07230 -35.22786 -32.89704 -32.32698 -31.52382 -30.28856 -26.73628 -26.52746 -25.56463 -23.52023 -22.33901 -21.25725 -20.85172 -18.70212 -17.75866 -17.27691 -16.52391 -15.72413 -15.45547 -14.96683 -14.68265 -14.28265 -14.15549 -13.84983 -13.41852 -13.16377 -12.82571 -12.79674 -12.48966 -12.37667 -11.92675 -11.82194 -11.60166 -11.36687 -11.29970 -10.94051 -10.88553 -10.63253 -10.35485 -10.12633 -9.97872 -9.58426 -8.85773 -8.74158 -8.68043 -8.20557 -8.12419 -7.47715 -6.26649 -4.27421 1.60784 1.68848 3.10467 3.27330 3.31738 3.44485 3.53230 3.66545 3.87503 4.07520 4.33503 4.52629 4.82566 4.98655 5.03930 5.09774 5.16576 5.21885 5.27267 5.35530 5.49764 5.68382 5.76837 5.84081 5.91635 6.01653 6.05101 6.09327 6.19854 6.24107 6.25098 6.33446 6.35213 6.48130 6.68945 6.73531 6.77511 7.00867 7.29134 7.74053 8.15191 8.40090 8.55882 8.97397 9.26985 9.79997 10.77862 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.009574 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.285630 B = 2923.793430 C = 3480.460552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.192 3.808 4 N -0.467 5.467 5 C -0.333 4.333 6 H 0.093 0.907 7 C 0.080 3.920 8 N -0.866 5.866 9 Si 0.881 3.119 10 H -0.252 1.252 11 H -0.301 1.301 12 H -0.269 1.269 13 C 0.535 3.465 14 O -0.533 6.533 15 C -0.110 4.110 16 C -0.036 4.036 17 C -0.088 4.088 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.060 4.060 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.167 4.167 25 H 0.205 0.795 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.272 0.728 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 15.091 -1.177 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.070 3.930 4 N -0.190 5.190 5 C -0.460 4.460 6 H 0.110 0.890 7 C -0.128 4.128 8 N -0.500 5.500 9 Si 0.709 3.291 10 H -0.176 1.176 11 H -0.229 1.229 12 H -0.195 1.195 13 C 0.321 3.679 14 O -0.410 6.410 15 C -0.114 4.114 16 C -0.037 4.037 17 C -0.106 4.106 18 C -0.150 4.150 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.060 4.060 22 C -0.173 4.173 23 C -0.179 4.179 24 C -0.204 4.204 25 H 0.222 0.778 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.469 14.474 -1.634 15.938 hybrid contribution -1.367 -0.063 0.586 1.489 sum -7.836 14.412 -1.048 16.438 Atomic orbital electron populations 1.24408 0.95677 1.00818 1.01227 1.23586 0.95460 1.00108 0.99690 1.18939 0.83048 0.96928 0.94070 1.43420 1.58073 1.14625 1.02912 1.18740 0.94549 0.81827 1.50881 0.88958 1.25687 0.98465 0.94568 0.94111 1.69758 1.37219 0.99122 1.43903 0.87092 0.84504 0.76420 0.81087 1.17636 1.22915 1.19467 1.19418 0.78784 0.85849 0.83850 1.90581 1.49316 1.59702 1.41450 1.20223 0.90642 0.93147 1.07383 1.18580 0.91745 0.97813 0.95539 1.20879 0.95237 0.97600 0.96912 1.20885 0.93443 1.01346 0.99277 1.20990 0.99114 0.98200 0.95527 1.20932 0.94369 0.99848 0.99488 1.19806 0.93168 0.96616 0.96391 1.20878 1.01056 0.99816 0.95522 1.22964 1.01602 1.01097 0.92276 1.23115 1.00991 0.98755 0.97514 0.77827 0.88174 0.89992 0.91771 0.86397 0.86636 0.86753 0.86599 0.90402 0.92724 0.90463 0.87905 0.88529 0.88271 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.74 12.17 29.55 0.36 -3.38 16 2 C -0.19 -3.69 5.92 -37.12 -0.22 -3.91 16 3 C 0.19 3.81 4.94 -6.83 -0.03 3.78 16 4 N -0.47 -11.20 2.02 -117.94 -0.24 -11.44 16 5 C -0.33 -9.44 8.99 -14.93 -0.13 -9.57 16 6 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 7 C 0.08 2.32 5.50 -17.47 -0.10 2.22 16 8 N -0.87 -26.24 13.96 55.50 0.77 -25.46 16 9 Si 0.88 22.24 22.69 -169.99 -3.86 18.38 16 10 H -0.25 -6.40 5.38 56.52 0.30 -6.10 16 11 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 12 H -0.27 -6.43 6.22 56.52 0.35 -6.08 16 13 C 0.53 12.38 5.97 -10.99 -0.07 12.31 16 14 O -0.53 -14.33 15.25 5.55 0.08 -14.25 16 15 C -0.11 -1.95 0.20 -156.82 -0.03 -1.98 16 16 C -0.04 -0.61 3.65 -104.63 -0.38 -1.00 16 17 C -0.09 -1.29 5.75 -39.58 -0.23 -1.52 16 18 C -0.13 -1.72 8.62 -39.58 -0.34 -2.06 16 19 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 20 C -0.13 -1.92 9.68 -39.58 -0.38 -2.30 16 21 C -0.06 -1.03 5.86 -104.63 -0.61 -1.64 16 22 C -0.12 -2.08 8.30 36.01 0.30 -1.78 16 23 C -0.14 -2.12 8.97 -26.74 -0.24 -2.36 16 24 C -0.17 -2.33 7.74 -26.74 -0.21 -2.54 16 25 H 0.20 3.20 7.80 -54.10 -0.42 2.78 16 26 H 0.10 1.96 7.92 -51.93 -0.41 1.55 16 27 H 0.08 1.34 5.90 -51.93 -0.31 1.04 16 28 H 0.27 7.74 8.31 -40.82 -0.34 7.41 16 29 H 0.12 1.56 7.00 -52.49 -0.37 1.20 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.08 1.66 7.56 -51.93 -0.39 1.27 16 34 H 0.05 0.81 8.04 -51.93 -0.42 0.39 16 35 H 0.08 1.40 6.19 -51.93 -0.32 1.08 16 36 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.10 1.15 7.13 -51.93 -0.37 0.78 16 39 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 307.42 15.07 4.63 4.63 Total: -1.00 -33.20 307.42 -6.57 -39.76 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.25 Total: 6.08 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.71 Total: -17.71 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.54 Total: -36.90 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -3.86 Total: 18.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.20 -6.57 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.047 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds