Wall clock time and date at job start Tue Mar 31 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46992 * 325.82406 * 3 2 1 5 5 C 1.36710 * 120.00040 * 262.35161 * 4 3 2 6 6 H 1.07997 * 120.00265 * 212.68014 * 5 4 3 7 7 C 1.39126 * 119.99875 * 32.67867 * 5 4 3 8 8 N 1.31324 * 120.00185 * 5.89600 * 7 5 4 9 9 Si 1.86805 * 119.99992 * 185.89911 * 7 5 4 10 10 H 1.48497 * 109.47065 * 59.99728 * 9 7 5 11 11 H 1.48498 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46630 * 300.00024 * 9 7 5 13 13 C 1.34773 * 119.99741 * 82.35339 * 4 3 2 14 14 O 1.21757 * 119.99875 * 180.02562 * 13 4 3 15 15 C 1.46225 * 120.00341 * 359.97438 * 13 4 3 16 16 C 1.34977 * 120.00169 * 186.77323 * 15 13 4 17 17 C 1.47139 * 119.99845 * 15.05683 * 16 15 13 18 18 C 1.39873 * 120.17731 * 38.32076 * 17 16 15 19 19 C 1.37881 * 119.82371 * 180.02562 * 18 17 16 20 20 C 1.38403 * 120.17527 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.82377 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.47552 * 90.00082 * 21 20 19 23 23 C 1.38414 * 120.35209 * 0.25071 * 20 19 18 24 24 C 1.37876 * 120.17339 * 359.45360 * 23 20 19 25 25 H 4.40647 * 5.51367 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.46938 * 205.82684 * 3 2 1 27 27 H 1.08994 * 109.47109 * 85.82342 * 3 2 1 28 28 H 0.96996 * 119.99680 * 180.02562 * 8 7 5 29 29 H 1.08007 * 120.00153 * 6.76958 * 15 13 4 30 30 H 1.07999 * 120.00097 * 195.05275 * 16 15 13 31 31 H 1.08004 * 120.08509 * 0.04992 * 18 17 16 32 32 H 1.08000 * 119.91093 * 180.02562 * 19 18 17 33 33 H 1.08995 * 109.47299 * 329.99556 * 21 20 19 34 34 H 1.09005 * 109.47326 * 210.00072 * 21 20 19 35 35 H 1.08999 * 109.47047 * 299.99987 * 22 21 20 36 36 H 1.09001 * 109.47459 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47304 * 60.00023 * 22 21 20 38 38 H 1.08006 * 119.91046 * 179.72161 * 23 20 19 39 39 H 1.08001 * 120.09095 * 180.29335 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1419 0.7759 5 6 3.5112 -0.9723 2.0792 6 1 4.3099 -1.5701 2.4928 7 6 2.8653 -0.0295 2.8727 8 7 1.8200 0.6151 2.4074 9 14 3.4849 0.3194 4.6001 10 1 4.8865 0.8055 4.5344 11 1 2.6308 1.3568 5.2322 12 1 3.4303 -0.9264 5.4066 13 6 3.2136 -2.3601 0.2048 14 8 3.6194 -3.3097 0.8498 15 6 2.8106 -2.5416 -1.1890 16 6 2.7588 -3.7812 -1.7207 17 6 2.7790 -4.9604 -0.8409 18 6 2.0895 -4.9417 0.3760 19 6 2.1138 -6.0506 1.1950 20 6 2.8183 -7.1800 0.8161 21 6 2.8400 -8.3874 1.7177 22 6 1.6710 -9.3089 1.3643 23 6 3.5079 -7.2044 -0.3838 24 6 3.4884 -6.1059 -1.2167 25 1 -1.0498 -0.0001 0.0003 26 1 3.0089 0.9259 0.4477 27 1 3.0094 -0.0740 -1.0249 28 1 1.3700 1.2726 2.9605 29 1 2.5543 -1.6838 -1.7932 30 1 2.7024 -3.9075 -2.7918 31 1 1.5393 -4.0610 0.6730 32 1 1.5816 -6.0378 2.1347 33 1 2.7494 -8.0674 2.7557 34 1 3.7792 -8.9242 1.5837 35 1 0.7318 -8.7722 1.4983 36 1 1.6870 -10.1824 2.0161 37 1 1.7616 -9.6290 0.3262 38 1 4.0590 -8.0879 -0.6703 39 1 4.0230 -6.1281 -2.1549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490972385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:40 Heat of formation + Delta-G solvation = 77.960794 kcal Electronic energy + Delta-G solvation = -21588.477290 eV Core-core repulsion = 18463.780972 eV Total energy + Delta-G solvation = -3124.696318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.30183 -38.23117 -35.45629 -34.12804 -32.35786 -31.72832 -31.21504 -30.31856 -28.29163 -26.47726 -25.12148 -23.70126 -22.19454 -21.63139 -20.20971 -18.21770 -17.72417 -16.85216 -16.47450 -15.47493 -15.03537 -14.91089 -14.41818 -14.05508 -13.84584 -13.48700 -13.39875 -12.94153 -12.87886 -12.68584 -12.37525 -12.21210 -12.13552 -11.57393 -11.48462 -11.19932 -11.04925 -11.00215 -10.64051 -10.49148 -10.41500 -10.34853 -9.43764 -9.27739 -9.10028 -8.86554 -8.54796 -8.18648 -7.70152 -7.24499 -6.33845 -3.98838 1.33058 2.10529 2.54288 3.18604 3.21708 3.25172 3.80000 4.05281 4.17234 4.40467 4.46088 5.01113 5.05662 5.08916 5.13615 5.34460 5.45898 5.47709 5.52132 5.58487 5.71884 5.77444 5.91878 5.94753 5.98170 6.05477 6.27403 6.30856 6.33759 6.53606 6.61663 6.68440 6.76691 6.85899 7.04308 7.06898 7.17951 7.32786 7.48122 7.62839 8.13419 8.43047 8.85637 9.12855 9.29408 9.94368 10.64383 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.005106 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.272920 B = 5482.613453 C = 6346.322465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.108 4.108 3 C 0.231 3.769 4 N -0.428 5.428 5 C -0.308 4.308 6 H 0.098 0.902 7 C 0.035 3.965 8 N -0.862 5.862 9 Si 0.926 3.074 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.471 3.529 14 O -0.565 6.565 15 C -0.177 4.177 16 C -0.078 4.078 17 C -0.055 4.055 18 C -0.017 4.017 19 C -0.133 4.133 20 C -0.082 4.082 21 C -0.083 4.083 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.108 4.108 25 H 0.197 0.803 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.270 0.730 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -8.467 -6.399 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.110 4.110 3 C 0.108 3.892 4 N -0.145 5.145 5 C -0.436 4.436 6 H 0.115 0.885 7 C -0.170 4.170 8 N -0.498 5.498 9 Si 0.752 3.248 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.262 3.738 14 O -0.450 6.450 15 C -0.198 4.198 16 C -0.099 4.099 17 C -0.055 4.055 18 C -0.035 4.035 19 C -0.151 4.151 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.201 4.201 23 C -0.159 4.159 24 C -0.126 4.126 25 H 0.214 0.786 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.750 -8.711 -5.949 10.575 hybrid contribution -0.072 0.674 0.938 1.157 sum -0.822 -8.037 -5.011 9.507 Atomic orbital electron populations 1.24204 0.95313 1.02656 1.05963 1.23054 0.94240 0.98190 0.95517 1.18249 0.84425 0.92695 0.93833 1.43552 1.54521 1.05260 1.11124 1.19515 1.16990 1.21386 0.85703 0.88474 1.25516 0.94687 0.97131 0.99695 1.69873 1.17738 1.24848 1.37361 0.86007 0.78576 0.78245 0.81944 1.19808 1.20943 1.19767 1.18122 0.85094 0.83152 0.87419 1.90722 1.51089 1.38340 1.64828 1.23331 1.02009 0.97420 0.97008 1.22062 0.98429 0.91668 0.97716 1.18794 0.98562 0.93057 0.95059 1.21147 0.95325 0.95681 0.91386 1.20754 1.01370 0.93222 0.99775 1.19774 0.97908 0.95183 0.95383 1.20498 0.98824 0.94129 0.98568 1.21735 0.98398 0.98724 1.01273 1.20626 1.01866 0.98317 0.95087 1.21065 0.99216 0.92967 0.99338 0.78569 0.87904 0.91960 0.91900 0.86187 0.86038 0.86630 0.87035 0.91372 0.91579 0.92612 0.92916 0.92763 0.87187 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.42 19.24 29.55 0.57 -4.85 16 2 C -0.11 -2.40 10.81 -37.12 -0.40 -2.80 16 3 C 0.23 5.02 4.80 -6.83 -0.03 4.99 16 4 N -0.43 -10.64 2.57 -119.60 -0.31 -10.95 16 5 C -0.31 -8.30 9.05 -15.05 -0.14 -8.43 16 6 H 0.10 2.74 7.59 -52.49 -0.40 2.34 16 7 C 0.04 0.90 5.15 -17.44 -0.09 0.81 16 8 N -0.86 -22.30 9.34 55.51 0.52 -21.79 16 9 Si 0.93 20.45 29.56 -169.99 -5.02 15.42 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.47 11.34 6.33 -13.05 -0.08 11.26 16 14 O -0.56 -15.07 12.06 5.14 0.06 -15.01 16 15 C -0.18 -3.42 8.86 -37.53 -0.33 -3.75 16 16 C -0.08 -1.36 9.83 -37.13 -0.36 -1.72 16 17 C -0.05 -1.03 4.65 -105.06 -0.49 -1.52 16 18 C -0.02 -0.35 6.63 -39.10 -0.26 -0.61 16 19 C -0.13 -2.48 9.68 -39.65 -0.38 -2.86 16 20 C -0.08 -1.34 5.14 -104.50 -0.54 -1.88 16 21 C -0.08 -1.07 6.06 -27.89 -0.17 -1.24 16 22 C -0.14 -1.58 9.89 37.15 0.37 -1.22 16 23 C -0.14 -2.23 9.67 -39.65 -0.38 -2.61 16 24 C -0.11 -1.79 9.80 -39.10 -0.38 -2.18 16 25 H 0.20 3.34 7.80 -54.10 -0.42 2.92 16 26 H 0.10 2.34 6.98 -51.93 -0.36 1.97 16 27 H 0.06 1.13 6.47 -51.93 -0.34 0.79 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.12 2.04 6.24 -52.48 -0.33 1.71 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 2.64 6.72 -52.48 -0.35 2.29 16 32 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -30.36 333.35 -7.97 -38.32 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.13 Total: 7.59 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.11 Total: -18.62 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.21 Total: -32.73 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.06 Total: -15.01 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.36 -7.97 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.285 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds