Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47059 * 113.35496 * 3 2 1 5 5 C 1.36704 * 120.00140 * 263.81775 * 4 3 2 6 6 H 1.08004 * 120.00501 * 199.93773 * 5 4 3 7 7 C 1.39128 * 120.00115 * 19.93168 * 5 4 3 8 8 N 1.31327 * 119.99957 * 21.81151 * 7 5 4 9 9 Si 1.86796 * 120.00435 * 201.80485 * 7 5 4 10 10 H 1.48502 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47219 * 120.00271 * 9 7 5 12 12 H 1.48502 * 109.47478 * 240.00455 * 9 7 5 13 13 C 1.34784 * 119.99808 * 83.81780 * 4 3 2 14 14 O 1.21754 * 119.99668 * 180.02562 * 13 4 3 15 15 C 1.46230 * 120.00122 * 359.97438 * 13 4 3 16 16 C 1.34970 * 119.99663 * 180.02562 * 15 13 4 17 17 C 1.47147 * 119.99944 * 180.02562 * 16 15 13 18 18 C 1.39874 * 120.17473 * 179.97438 * 17 16 15 19 19 C 1.37883 * 119.82028 * 179.97438 * 18 17 16 20 20 C 1.38409 * 120.17652 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.82497 * 179.97438 * 20 19 18 22 22 C 1.52988 * 109.47190 * 90.00386 * 21 20 19 23 23 C 1.38419 * 120.35171 * 0.26140 * 20 19 18 24 24 C 1.37875 * 120.16861 * 359.47969 * 23 20 19 25 25 H 4.40644 * 5.51442 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47272 * 353.35167 * 3 2 1 27 27 H 1.09003 * 109.46684 * 233.35379 * 3 2 1 28 28 H 0.96998 * 120.00392 * 179.97438 * 8 7 5 29 29 H 1.07995 * 119.99882 * 0.02562 * 15 13 4 30 30 H 1.07995 * 120.00454 * 359.97438 * 16 15 13 31 31 H 1.07994 * 120.09126 * 359.96016 * 18 17 16 32 32 H 1.07999 * 119.91243 * 179.97438 * 19 18 17 33 33 H 1.09005 * 109.46969 * 330.00420 * 21 20 19 34 34 H 1.09006 * 109.47350 * 210.00685 * 21 20 19 35 35 H 1.08997 * 109.47278 * 300.00246 * 22 21 20 36 36 H 1.09001 * 109.47454 * 179.97438 * 22 21 20 37 37 H 1.09005 * 109.47137 * 60.00137 * 22 21 20 38 38 H 1.08002 * 119.90931 * 179.74051 * 23 20 19 39 39 H 1.08007 * 120.08263 * 180.25433 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5484 -1.2680 5 6 3.4825 -0.2934 -2.2872 6 1 4.1280 0.0560 -3.0796 7 6 3.0057 -1.6003 -2.3039 8 7 1.9229 -1.9129 -1.6298 9 14 3.9056 -2.9104 -3.2852 10 1 5.0880 -2.3061 -3.9501 11 1 4.3515 -3.9937 -2.3724 12 1 2.9933 -3.4733 -4.3128 13 6 3.2396 1.8824 -1.4297 14 8 3.6448 2.3376 -2.4838 15 6 2.8664 2.7828 -0.3397 16 6 2.9716 4.1186 -0.5019 17 6 2.5965 5.0247 0.5952 18 6 2.7046 6.4096 0.4312 19 6 2.3507 7.2520 1.4639 20 6 1.8890 6.7306 2.6600 21 6 1.5049 7.6585 3.7835 22 6 0.0232 8.0198 3.6627 23 6 1.7838 5.3611 2.8317 24 6 2.1287 4.5057 1.8069 25 1 -1.0501 0.0001 0.0002 26 1 3.0098 -1.0199 0.1190 27 1 3.0090 0.6142 0.8246 28 1 1.5902 -2.8239 -1.6417 29 1 2.5066 2.3790 0.5951 30 1 3.3317 4.5224 -1.4365 31 1 3.0645 6.8180 -0.5015 32 1 2.4339 8.3215 1.3390 33 1 2.1060 8.5661 3.7267 34 1 1.6818 7.1648 4.7392 35 1 -0.1536 8.5135 2.7072 36 1 -0.2547 8.6906 4.4756 37 1 -0.5778 7.1122 3.7195 38 1 1.4266 4.9619 3.7695 39 1 2.0421 3.4375 1.9410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490972386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = 63.833483 kcal Electronic energy + Delta-G solvation = -20735.347960 eV Core-core repulsion = 17610.039035 eV Total energy + Delta-G solvation = -3125.308924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.40327 -38.56998 -35.39702 -34.76410 -32.46269 -31.90217 -31.26111 -30.88100 -28.58478 -26.54738 -25.29341 -23.98492 -22.68378 -21.83762 -20.31371 -18.26969 -17.84800 -17.04530 -16.54669 -15.77276 -15.39182 -14.95938 -14.64934 -14.21944 -14.02772 -13.82597 -13.73844 -13.25969 -13.13788 -12.76589 -12.50075 -12.36906 -12.24413 -11.97426 -11.67602 -11.49482 -11.18678 -11.06047 -10.87351 -10.65360 -10.55189 -10.38605 -9.76843 -9.39854 -9.32269 -8.96708 -8.87329 -8.45519 -7.94492 -7.77292 -6.44433 -3.89562 0.90508 1.50779 2.44390 3.12499 3.21274 3.28296 3.72104 3.92460 4.01040 4.13007 4.39938 4.66915 4.74473 4.84815 5.03579 5.05025 5.05988 5.19784 5.27248 5.39321 5.45184 5.49813 5.53731 5.65072 5.70665 5.83325 5.94350 6.00618 6.08581 6.19082 6.27423 6.44403 6.51306 6.63983 6.64510 6.92661 6.98197 7.04483 7.11342 7.45915 8.02351 8.36859 8.78599 9.07689 9.26925 9.89769 10.55086 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003436 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.077940 B = 8147.712330 C = 8782.070398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.118 4.118 3 C 0.230 3.770 4 N -0.424 5.424 5 C -0.309 4.309 6 H 0.107 0.893 7 C 0.031 3.969 8 N -0.849 5.849 9 Si 0.923 3.077 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.464 3.536 14 O -0.591 6.591 15 C -0.155 4.155 16 C -0.089 4.089 17 C -0.047 4.047 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.083 4.083 22 C -0.147 4.147 23 C -0.116 4.116 24 C -0.111 4.111 25 H 0.199 0.801 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.270 0.730 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.120 0.880 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 12.311 11.998 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.119 4.119 3 C 0.107 3.893 4 N -0.140 5.140 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.175 4.175 8 N -0.486 5.486 9 Si 0.749 3.251 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.257 3.743 14 O -0.478 6.478 15 C -0.176 4.176 16 C -0.110 4.110 17 C -0.048 4.048 18 C -0.126 4.126 19 C -0.137 4.137 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.204 4.204 23 C -0.134 4.134 24 C -0.129 4.129 25 H 0.217 0.783 26 H 0.124 0.876 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.893 12.278 11.498 16.928 hybrid contribution -0.150 -0.980 -0.456 1.092 sum -2.043 11.298 11.042 15.929 Atomic orbital electron populations 1.24269 0.95360 1.04756 1.02840 1.23086 0.94278 0.96795 0.97784 1.18285 0.84457 1.00707 0.85893 1.43649 1.53968 1.04328 1.12037 1.19769 1.27530 0.91448 1.04899 0.87500 1.25416 0.95009 0.99049 0.98019 1.70068 1.17442 1.20135 1.40921 0.85922 0.79831 0.80113 0.79259 1.19002 1.20450 1.20730 1.17937 0.85902 0.82356 0.88133 1.90639 1.52304 1.75678 1.29138 1.23307 1.00770 0.94518 0.99029 1.22075 0.98846 0.92743 0.97297 1.19149 0.98551 0.93244 0.93815 1.21324 0.99797 0.92478 0.98969 1.20885 1.00309 0.99356 0.93101 1.19926 0.99834 0.94069 0.95493 1.20519 0.96836 0.98220 0.96459 1.21752 0.95430 1.01520 1.01721 1.20910 1.00812 0.92716 0.98959 1.21438 0.98656 1.00053 0.92738 0.78343 0.87557 0.91620 0.91892 0.86526 0.85236 0.85774 0.86327 0.91272 0.91215 0.92564 0.92616 0.92497 0.86237 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.25 19.25 29.55 0.57 -4.68 16 2 C -0.12 -2.63 11.10 -37.12 -0.41 -3.04 16 3 C 0.23 5.05 4.79 -6.83 -0.03 5.02 16 4 N -0.42 -10.82 2.59 -119.59 -0.31 -11.13 16 5 C -0.31 -8.46 9.27 -15.05 -0.14 -8.60 16 6 H 0.11 3.09 7.42 -52.48 -0.39 2.70 16 7 C 0.03 0.80 4.83 -17.44 -0.08 0.71 16 8 N -0.85 -21.95 9.59 55.51 0.53 -21.42 16 9 Si 0.92 20.06 29.61 -169.99 -5.03 15.03 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.46 11.71 7.49 -13.05 -0.10 11.62 16 14 O -0.59 -16.88 15.90 5.14 0.08 -16.79 16 15 C -0.16 -3.12 8.46 -37.53 -0.32 -3.44 16 16 C -0.09 -1.61 9.46 -37.13 -0.35 -1.96 16 17 C -0.05 -0.73 5.87 -105.06 -0.62 -1.34 16 18 C -0.11 -1.43 9.80 -39.10 -0.38 -1.81 16 19 C -0.12 -1.37 9.68 -39.65 -0.38 -1.76 16 20 C -0.09 -1.04 5.14 -104.49 -0.54 -1.58 16 21 C -0.08 -0.70 6.06 -27.89 -0.17 -0.87 16 22 C -0.15 -1.15 9.89 37.15 0.37 -0.79 16 23 C -0.12 -1.40 9.68 -39.65 -0.38 -1.78 16 24 C -0.11 -1.56 9.41 -39.10 -0.37 -1.93 16 25 H 0.20 3.37 7.80 -54.08 -0.42 2.94 16 26 H 0.11 2.42 6.61 -51.93 -0.34 2.07 16 27 H 0.07 1.20 6.46 -51.93 -0.34 0.86 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.12 2.08 4.23 -52.49 -0.22 1.86 16 30 H 0.13 2.46 7.52 -52.49 -0.39 2.06 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.71 6.17 -52.48 -0.32 1.38 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -31.32 338.44 -7.91 -39.22 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.94 Total: 6.24 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -3.34 Total: -16.25 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.22 Total: -32.55 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.08 Total: -16.79 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.32 -7.91 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490972386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.058 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds