Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47236 * 33.15963 * 3 2 1 5 5 C 1.36710 * 120.00216 * 269.99838 * 4 3 2 6 6 H 1.08004 * 120.00034 * 195.47851 * 5 4 3 7 7 C 1.39125 * 119.99990 * 15.48586 * 5 4 3 8 8 N 1.31318 * 120.00136 * 10.00956 * 7 5 4 9 9 Si 1.86802 * 120.00024 * 190.01397 * 7 5 4 10 10 H 1.48499 * 109.47164 * 89.99564 * 9 7 5 11 11 H 1.48495 * 109.47284 * 210.00031 * 9 7 5 12 12 H 1.48505 * 109.46900 * 329.99753 * 9 7 5 13 13 C 1.34787 * 119.99825 * 89.99706 * 4 3 2 14 14 O 1.21754 * 119.99861 * 5.18737 * 13 4 3 15 15 C 1.46225 * 119.99833 * 185.17942 * 13 4 3 16 16 C 1.34980 * 119.99618 * 177.95859 * 15 13 4 17 17 C 1.50700 * 120.00133 * 352.13886 * 16 15 13 18 18 C 1.52999 * 109.46621 * 87.98767 * 17 16 15 19 19 C 1.47148 * 119.99753 * 172.14144 * 16 15 13 20 20 C 1.39869 * 120.17189 * 244.72308 * 19 16 15 21 21 C 1.37887 * 119.82226 * 179.74154 * 20 19 16 22 22 C 1.38412 * 120.17152 * 0.51708 * 21 20 19 23 23 C 1.38417 * 120.35259 * 359.75954 * 22 21 20 24 24 C 1.37879 * 120.17422 * 359.97438 * 23 22 21 25 25 H 4.40635 * 5.51410 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.46725 * 273.15653 * 3 2 1 27 27 H 1.08994 * 109.46701 * 153.16251 * 3 2 1 28 28 H 0.96996 * 120.00317 * 185.00374 * 8 7 5 29 29 H 1.08001 * 120.00194 * 357.68645 * 15 13 4 30 30 H 1.09003 * 109.47069 * 207.98505 * 17 16 15 31 31 H 1.08996 * 109.47021 * 327.98983 * 17 16 15 32 32 H 1.09003 * 109.47185 * 299.99667 * 18 17 16 33 33 H 1.08996 * 109.47247 * 60.00354 * 18 17 16 34 34 H 1.09005 * 109.46897 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.09252 * 0.02562 * 20 19 16 36 36 H 1.07991 * 119.91259 * 180.25602 * 21 20 19 37 37 H 1.07998 * 119.82381 * 179.73990 * 22 21 20 38 38 H 1.07993 * 119.91418 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.08680 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1553 -0.7554 5 6 3.3633 -2.3423 -0.1168 6 1 3.9493 -3.1109 -0.5990 7 6 2.8409 -2.5603 1.1540 8 7 1.9712 -1.7166 1.6600 9 14 3.3768 -4.0532 2.1407 10 1 4.5653 -3.7045 2.9599 11 1 2.2691 -4.4809 3.0325 12 1 3.7221 -5.1611 1.2141 13 6 3.3594 -1.0487 -2.0802 14 8 3.2471 0.0310 -2.6317 15 6 3.7381 -2.2295 -2.8549 16 6 3.9228 -2.1311 -4.1884 17 6 3.5689 -0.8539 -4.9059 18 6 4.7703 0.0933 -4.8832 19 6 4.4695 -3.2708 -4.9416 20 6 5.7148 -3.1659 -5.5698 21 6 6.2227 -4.2403 -6.2692 22 6 5.4988 -5.4166 -6.3595 23 6 4.2632 -5.5263 -5.7454 24 6 3.7440 -4.4629 -5.0378 25 1 -1.0498 -0.0002 -0.0004 26 1 3.0093 -0.0558 1.0262 27 1 3.0089 0.9178 -0.4639 28 1 1.6618 -1.8278 2.5726 29 1 3.8744 -3.1795 -2.3596 30 1 3.3031 -1.0790 -5.9387 31 1 2.7231 -0.3799 -4.4080 32 1 5.0361 0.3184 -3.8504 33 1 5.6161 -0.3807 -5.3811 34 1 4.5145 1.0169 -5.4025 35 1 6.2791 -2.2475 -5.5034 36 1 7.1858 -4.1622 -6.7513 37 1 5.9001 -6.2531 -6.9122 38 1 3.7042 -6.4473 -5.8207 39 1 2.7796 -4.5500 -4.5595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985251.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = 77.171452 kcal Electronic energy + Delta-G solvation = -21586.043206 eV Core-core repulsion = 18461.312659 eV Total energy + Delta-G solvation = -3124.730547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.33727 -38.54261 -35.84084 -34.26608 -31.84841 -31.56281 -30.93230 -30.48080 -29.12140 -26.58532 -24.91663 -23.44612 -22.31120 -22.26760 -19.94322 -18.77372 -17.53639 -16.62410 -16.36369 -16.07145 -15.00241 -14.75366 -14.48890 -14.26273 -13.98223 -13.87063 -13.35505 -13.09876 -12.75781 -12.64564 -12.33707 -12.16193 -11.91181 -11.69067 -11.42533 -11.36094 -11.11813 -10.94187 -10.72814 -10.55436 -10.39726 -10.02643 -9.47197 -9.23344 -8.83590 -8.82320 -8.66774 -8.23890 -8.13100 -7.90955 -6.38259 -3.98766 1.32290 1.53806 2.14890 3.09127 3.16023 3.18139 3.82222 3.93161 4.07683 4.28247 4.37661 4.85174 5.02741 5.05108 5.07858 5.19005 5.30546 5.52961 5.61981 5.70119 5.75270 5.83001 6.08865 6.10946 6.14540 6.19072 6.29972 6.44150 6.53936 6.60855 6.69228 6.71213 6.86339 6.93052 6.99412 7.05860 7.14270 7.22103 7.29311 7.34953 7.62272 8.27835 8.96861 9.03243 9.40582 9.81818 10.54938 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015570 B = 0.005458 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.881407 B = 5129.008747 C = 6336.786488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.086 4.086 3 C 0.238 3.762 4 N -0.428 5.428 5 C -0.332 4.332 6 H 0.103 0.897 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.478 3.522 14 O -0.596 6.596 15 C -0.146 4.146 16 C -0.059 4.059 17 C -0.079 4.079 18 C -0.129 4.129 19 C -0.033 4.033 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.110 4.110 25 H 0.196 0.804 26 H 0.112 0.888 27 H 0.067 0.933 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -4.318 -9.541 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.088 4.088 3 C 0.116 3.884 4 N -0.143 5.143 5 C -0.459 4.459 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.271 3.729 14 O -0.485 6.485 15 C -0.167 4.167 16 C -0.062 4.062 17 C -0.116 4.116 18 C -0.186 4.186 19 C -0.033 4.033 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.138 4.138 24 C -0.128 4.128 25 H 0.213 0.787 26 H 0.130 0.870 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.730 -3.811 -9.559 11.326 hybrid contribution -0.115 -1.143 0.823 1.414 sum 4.616 -4.954 -8.736 11.053 Atomic orbital electron populations 1.24136 0.95290 1.04935 1.06072 1.23060 0.94216 0.96047 0.95452 1.18195 0.84198 0.87895 0.98093 1.43609 1.54645 1.10506 1.05578 1.19767 1.31710 0.93889 1.00571 0.87957 1.25360 0.94579 0.98977 0.98261 1.70002 1.26771 1.36890 1.15728 0.85955 0.78215 0.81093 0.79681 1.20179 1.20827 1.19373 1.17961 0.84133 0.88842 0.81987 1.90600 1.59489 1.29107 1.69303 1.22986 1.01017 0.99199 0.93466 1.20836 0.97751 0.94196 0.93385 1.20703 1.00950 0.92294 0.97662 1.21599 0.96521 0.97777 1.02707 1.19058 0.94175 0.93362 0.96716 1.21327 0.95174 0.98860 0.97247 1.21029 0.99775 0.93482 0.99694 1.21151 0.95308 0.97773 1.00587 1.21049 0.96093 0.98528 0.98157 1.21442 0.99986 0.92469 0.98909 0.78725 0.87019 0.91463 0.91777 0.85904 0.93755 0.87729 0.91164 0.94672 0.93632 0.85819 0.86279 0.86521 0.86236 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.54 19.25 29.55 0.57 -5.97 16 2 C -0.09 -2.13 11.29 -37.12 -0.42 -2.55 16 3 C 0.24 5.79 5.21 -6.83 -0.04 5.76 16 4 N -0.43 -10.64 2.57 -119.60 -0.31 -10.95 16 5 C -0.33 -8.22 9.18 -15.05 -0.14 -8.36 16 6 H 0.10 2.41 5.93 -52.48 -0.31 2.10 16 7 C 0.03 0.82 5.19 -17.44 -0.09 0.73 16 8 N -0.86 -21.73 8.53 55.50 0.47 -21.25 16 9 Si 0.92 19.13 29.57 -169.99 -5.03 14.10 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 C 0.48 11.37 7.44 -13.05 -0.10 11.28 16 14 O -0.60 -14.62 10.91 5.14 0.06 -14.56 16 15 C -0.15 -3.03 8.90 -37.53 -0.33 -3.36 16 16 C -0.06 -1.06 4.73 -102.16 -0.48 -1.55 16 17 C -0.08 -1.42 5.31 -27.88 -0.15 -1.57 16 18 C -0.13 -2.16 9.39 37.16 0.35 -1.81 16 19 C -0.03 -0.52 5.30 -105.06 -0.56 -1.08 16 20 C -0.11 -1.52 9.76 -39.10 -0.38 -1.90 16 21 C -0.12 -1.47 10.03 -39.65 -0.40 -1.86 16 22 C -0.13 -1.51 10.04 -39.45 -0.40 -1.90 16 23 C -0.12 -1.50 10.03 -39.65 -0.40 -1.89 16 24 C -0.11 -1.61 9.73 -39.10 -0.38 -1.99 16 25 H 0.20 3.68 7.80 -54.10 -0.42 3.25 16 26 H 0.11 2.75 6.32 -51.93 -0.33 2.42 16 27 H 0.07 1.57 7.35 -51.93 -0.38 1.19 16 28 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.12 2.51 6.19 -52.49 -0.32 2.18 16 30 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.10 2.17 5.82 -51.93 -0.30 1.87 16 32 H 0.07 1.35 6.60 -51.93 -0.34 1.01 16 33 H 0.03 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 1.64 6.50 -52.49 -0.34 1.30 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -27.87 329.55 -7.94 -35.81 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -4.76 Total: 9.91 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.34 Total: -18.02 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.17 Total: -32.20 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.06 Total: -14.56 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.87 -7.94 -35.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985251.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.979 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds