Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47438 * 350.36379 * 3 2 1 5 5 C 1.36708 * 120.00269 * 90.00171 * 4 3 2 6 6 H 1.08004 * 120.00058 * 305.08127 * 5 4 3 7 7 C 1.39122 * 120.00482 * 125.35767 * 5 4 3 8 8 N 1.31324 * 119.99956 * 161.90047 * 7 5 4 9 9 Si 1.86790 * 119.99878 * 341.90503 * 7 5 4 10 10 H 1.48507 * 109.47434 * 95.88602 * 9 7 5 11 11 H 1.48508 * 109.47142 * 215.88808 * 9 7 5 12 12 H 1.48504 * 109.47187 * 335.88784 * 9 7 5 13 13 C 1.34774 * 119.99880 * 270.00122 * 4 3 2 14 14 O 1.21763 * 120.00170 * 3.41579 * 13 4 3 15 15 C 1.46226 * 120.00210 * 183.42419 * 13 4 3 16 16 C 1.34979 * 120.00426 * 186.23210 * 15 13 4 17 17 C 1.50699 * 120.00397 * 187.48855 * 16 15 13 18 18 C 1.53000 * 109.46885 * 94.94535 * 17 16 15 19 19 C 1.47141 * 119.99548 * 7.48792 * 16 15 13 20 20 C 1.39875 * 120.17370 * 244.72305 * 19 16 15 21 21 C 1.37883 * 119.82589 * 179.74348 * 20 19 16 22 22 C 1.38412 * 120.17083 * 0.53891 * 21 20 19 23 23 C 1.38410 * 120.35224 * 359.71346 * 22 21 20 24 24 C 1.37882 * 120.17459 * 0.02748 * 23 22 21 25 25 H 4.40642 * 5.51460 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.47026 * 230.36076 * 3 2 1 27 27 H 1.09000 * 109.47008 * 110.36169 * 3 2 1 28 28 H 0.97002 * 119.99852 * 179.97438 * 8 7 5 29 29 H 1.08007 * 120.00147 * 6.22793 * 15 13 4 30 30 H 1.08996 * 109.47317 * 214.94795 * 17 16 15 31 31 H 1.09000 * 109.46963 * 334.94816 * 17 16 15 32 32 H 1.09009 * 109.46585 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.47354 * 300.00236 * 18 17 16 34 34 H 1.08991 * 109.47068 * 60.00598 * 18 17 16 35 35 H 1.08002 * 120.08830 * 0.02562 * 20 19 16 36 36 H 1.07999 * 119.91543 * 180.25756 * 21 20 19 37 37 H 1.08003 * 119.82560 * 179.69906 * 22 21 20 38 38 H 1.08003 * 119.91364 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.08627 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3608 0.2312 5 6 3.3633 -2.1943 -0.8281 6 1 2.5766 -2.3877 -1.5424 7 6 4.6072 -2.7978 -0.9830 8 7 4.7352 -3.8480 -1.7611 9 14 6.0952 -2.1144 -0.0842 10 1 6.3017 -2.8700 1.1775 11 1 7.2982 -2.2493 -0.9445 12 1 5.8689 -0.6805 0.2290 13 6 3.3598 -1.7917 1.4883 14 8 3.0978 -1.0717 2.4347 15 6 3.9186 -3.1237 1.7157 16 6 4.0267 -3.6047 2.9722 17 6 4.7538 -4.9007 3.2230 18 6 6.2068 -4.6054 3.6006 19 6 3.4347 -2.8637 4.0971 20 6 4.2554 -2.3220 5.0918 21 6 3.6933 -1.6243 6.1399 22 6 2.3200 -1.4690 6.2152 23 6 1.5007 -2.0066 5.2377 24 6 2.0478 -2.7023 4.1805 25 1 -1.0498 -0.0004 0.0003 26 1 3.0090 0.6564 0.7914 27 1 3.0092 0.3584 -0.9635 28 1 5.6025 -4.2685 -1.8694 29 1 4.2447 -3.7227 0.8783 30 1 4.2686 -5.4378 4.0379 31 1 4.7299 -5.5113 2.3204 32 1 6.7326 -5.5428 3.7824 33 1 6.6921 -4.0683 2.7857 34 1 6.2307 -3.9949 4.5032 35 1 5.3269 -2.4459 5.0366 36 1 4.3260 -1.2019 6.9065 37 1 1.8854 -0.9257 7.0413 38 1 0.4300 -1.8808 5.3033 39 1 1.4071 -3.1215 3.4188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490985253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = 74.529441 kcal Electronic energy + Delta-G solvation = -22379.003066 eV Core-core repulsion = 19254.157953 eV Total energy + Delta-G solvation = -3124.845113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.48606 -38.26273 -35.49081 -34.78345 -33.02238 -31.56526 -30.83345 -30.29814 -29.15240 -26.90073 -24.72096 -23.61137 -22.25172 -21.93582 -20.20890 -18.47215 -17.99744 -17.28708 -16.12251 -15.53833 -15.39126 -14.79978 -14.39407 -14.25042 -14.18486 -13.62311 -13.47657 -13.01780 -12.94125 -12.77859 -12.57288 -12.40679 -12.07842 -11.94173 -11.79965 -11.44231 -11.05023 -11.03492 -10.63063 -10.49106 -10.25532 -10.18747 -9.98441 -9.51720 -9.19789 -8.85216 -8.46096 -8.40048 -7.73711 -7.66816 -6.56204 -4.33840 1.60562 1.94977 2.22974 3.08832 3.19675 3.26446 3.30960 3.48846 4.06029 4.21630 4.31787 4.60645 4.78568 5.08926 5.11370 5.32474 5.33786 5.37628 5.51930 5.55051 5.64054 5.87418 5.97007 6.01570 6.11977 6.15361 6.25532 6.29775 6.37338 6.44212 6.47375 6.53147 6.54336 6.81506 6.95208 7.00342 7.15427 7.17334 7.51785 7.62271 7.65649 8.23175 8.39571 8.89230 9.19097 9.63376 10.51896 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.008780 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.788658 B = 3188.136499 C = 4621.704273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C 0.208 3.792 4 N -0.460 5.460 5 C -0.350 4.350 6 H 0.098 0.902 7 C 0.078 3.922 8 N -0.857 5.857 9 Si 0.851 3.149 10 H -0.251 1.251 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.511 3.489 14 O -0.568 6.568 15 C -0.156 4.156 16 C -0.062 4.062 17 C -0.080 4.080 18 C -0.152 4.152 19 C -0.002 4.002 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.119 4.119 24 C -0.076 4.076 25 H 0.210 0.790 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.277 0.723 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 0.257 10.032 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.163 4.163 3 C 0.086 3.914 4 N -0.180 5.180 5 C -0.477 4.477 6 H 0.116 0.884 7 C -0.130 4.130 8 N -0.491 5.491 9 Si 0.676 3.324 10 H -0.176 1.176 11 H -0.209 1.209 12 H -0.186 1.186 13 C 0.304 3.696 14 O -0.452 6.452 15 C -0.176 4.176 16 C -0.065 4.065 17 C -0.117 4.117 18 C -0.209 4.209 19 C -0.003 4.003 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.137 4.137 24 C -0.095 4.095 25 H 0.227 0.773 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.166 0.834 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.397 0.483 10.359 10.378 hybrid contribution 0.604 0.365 -0.100 0.713 sum 0.207 0.848 10.259 10.297 Atomic orbital electron populations 1.24642 0.95678 1.01499 1.03615 1.23906 0.95129 0.99142 0.98081 1.18509 0.83413 0.87329 1.02164 1.43474 1.59155 1.10096 1.05322 1.18949 0.98662 1.23661 1.06475 0.88418 1.25667 0.97753 0.94698 0.94914 1.69699 1.25713 1.17455 1.36240 0.87260 0.82818 0.81764 0.80569 1.17644 1.20871 1.18630 1.18559 0.80501 0.87546 0.83043 1.90761 1.55381 1.57741 1.41330 1.23426 1.00393 0.96811 0.96993 1.20920 0.97313 0.95945 0.92273 1.20504 0.94996 0.93928 1.02276 1.21848 0.95582 1.01501 1.01959 1.18647 0.93075 0.95725 0.92806 1.21129 0.98872 0.98871 0.94351 1.20845 0.94956 0.99954 0.98442 1.20974 0.93778 1.01078 0.99188 1.20854 0.99085 0.98713 0.95016 1.21041 0.93860 0.97793 0.96767 0.77325 0.89392 0.88618 0.91203 0.83405 0.91200 0.90551 0.92449 0.92122 0.92511 0.86787 0.86988 0.87137 0.86942 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.33 19.25 29.55 0.57 -3.76 16 2 C -0.16 -3.36 13.67 -37.12 -0.51 -3.87 16 3 C 0.21 4.48 5.83 -6.83 -0.04 4.44 16 4 N -0.46 -11.19 1.85 -119.60 -0.22 -11.41 16 5 C -0.35 -9.09 9.22 -15.05 -0.14 -9.23 16 6 H 0.10 2.74 8.06 -52.48 -0.42 2.32 16 7 C 0.08 1.99 3.67 -17.44 -0.06 1.93 16 8 N -0.86 -22.67 13.95 55.50 0.77 -21.89 16 9 Si 0.85 19.72 24.85 -169.99 -4.22 15.50 16 10 H -0.25 -5.53 4.99 56.52 0.28 -5.25 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.51 12.42 5.98 -13.05 -0.08 12.35 16 14 O -0.57 -14.23 12.68 5.13 0.07 -14.16 16 15 C -0.16 -3.51 6.04 -37.53 -0.23 -3.74 16 16 C -0.06 -1.21 4.75 -102.17 -0.49 -1.70 16 17 C -0.08 -1.27 6.08 -27.88 -0.17 -1.44 16 18 C -0.15 -2.19 9.84 37.16 0.37 -1.83 16 19 C 0.00 -0.05 3.44 -105.06 -0.36 -0.41 16 20 C -0.11 -1.99 9.51 -39.10 -0.37 -2.36 16 21 C -0.12 -1.94 10.03 -39.65 -0.40 -2.34 16 22 C -0.13 -2.04 10.04 -39.45 -0.40 -2.43 16 23 C -0.12 -1.98 10.03 -39.65 -0.40 -2.38 16 24 C -0.08 -1.44 7.86 -39.10 -0.31 -1.75 16 25 H 0.21 2.90 7.80 -54.10 -0.42 2.48 16 26 H 0.09 1.86 7.47 -51.93 -0.39 1.47 16 27 H 0.10 1.89 8.04 -51.93 -0.42 1.47 16 28 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.15 3.51 4.71 -52.48 -0.25 3.26 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.20 8.01 -51.93 -0.42 0.79 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.98 6.80 -51.93 -0.35 0.63 16 34 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 35 H 0.11 1.83 6.20 -52.49 -0.33 1.50 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -29.42 327.69 -6.77 -36.19 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.10 Total: 9.35 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.01 Total: -18.51 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.55 Total: -33.30 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.22 Total: 15.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.42 -6.77 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490985253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.716 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds