Wall clock time and date at job start Tue Mar 31 2020 05:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47437 * 344.83269 * 3 2 1 5 5 C 1.36715 * 119.99809 * 265.89810 * 4 3 2 6 6 H 1.07999 * 119.99958 * 200.02229 * 5 4 3 7 7 C 1.39121 * 119.99969 * 20.02689 * 5 4 3 8 8 N 1.31323 * 120.00255 * 18.54561 * 7 5 4 9 9 Si 1.86809 * 119.99776 * 198.54789 * 7 5 4 10 10 H 1.48503 * 109.46893 * 89.99710 * 9 7 5 11 11 H 1.48498 * 109.47015 * 209.99429 * 9 7 5 12 12 H 1.48495 * 109.46919 * 330.00047 * 9 7 5 13 13 C 1.34780 * 120.00096 * 85.89926 * 4 3 2 14 14 O 1.21759 * 120.00105 * 184.71368 * 13 4 3 15 15 C 1.46233 * 119.99863 * 4.71344 * 13 4 3 16 16 C 1.50697 * 119.99792 * 259.16883 * 15 13 4 17 17 C 1.34972 * 119.99847 * 79.16838 * 15 13 4 18 18 C 1.47146 * 119.99664 * 173.72855 * 17 15 13 19 19 C 1.39874 * 120.17596 * 144.00001 * 18 17 15 20 20 C 1.37879 * 119.82743 * 179.97438 * 19 18 17 21 21 C 1.38411 * 120.17261 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.82757 * 179.72346 * 21 20 19 23 23 C 1.38419 * 120.34851 * 0.02562 * 21 20 19 24 24 C 1.37872 * 120.17686 * 359.97438 * 23 21 20 25 25 H 4.40638 * 5.51386 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46757 * 224.82889 * 3 2 1 27 27 H 1.09004 * 109.46736 * 104.83367 * 3 2 1 28 28 H 0.97000 * 119.99656 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.47076 * 264.58491 * 16 15 13 30 30 H 1.09001 * 109.47518 * 24.57946 * 16 15 13 31 31 H 1.08990 * 109.47442 * 144.58789 * 16 15 13 32 32 H 1.07998 * 120.00305 * 353.72061 * 17 15 13 33 33 H 1.08004 * 120.08610 * 359.97438 * 19 18 17 34 34 H 1.07989 * 119.91198 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46652 * 89.99850 * 22 21 20 36 36 H 1.08994 * 109.47505 * 210.00406 * 22 21 20 37 37 H 1.09007 * 109.46704 * 330.00471 * 22 21 20 38 38 H 1.08003 * 119.90739 * 180.02562 * 23 21 20 39 39 H 1.08004 * 120.08605 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3322 0.3614 5 6 3.4428 -1.6178 1.6624 6 1 4.0900 -2.4508 1.8938 7 6 2.9224 -0.8353 2.6883 8 7 1.8756 -0.0738 2.4669 9 14 3.7127 -0.8678 4.3806 10 1 4.7666 0.1757 4.4549 11 1 2.6800 -0.6028 5.4143 12 1 4.3197 -2.2021 4.6179 13 6 3.2814 -2.2768 -0.5888 14 8 3.6052 -3.4085 -0.2774 15 6 3.0513 -1.9425 -1.9937 16 6 1.7507 -2.3197 -2.6547 17 6 4.0039 -1.2961 -2.6983 18 6 3.8317 -1.0819 -4.1438 19 6 4.2890 0.0984 -4.7391 20 6 4.1243 0.2914 -6.0943 21 6 3.5088 -0.6792 -6.8656 22 6 3.3273 -0.4574 -8.3450 23 6 3.0535 -1.8499 -6.2840 24 6 3.2107 -2.0579 -4.9301 25 1 -1.0498 -0.0004 0.0003 26 1 3.0089 0.7297 0.7245 27 1 3.0092 0.2639 -0.9935 28 1 1.5130 0.4720 3.1821 29 1 1.8704 -3.2692 -3.1767 30 1 0.9729 -2.4172 -1.8972 31 1 1.4679 -1.5460 -3.3683 32 1 4.8925 -0.9361 -2.2011 33 1 4.7698 0.8566 -4.1387 34 1 4.4772 1.2020 -6.5554 35 1 4.1962 -0.8416 -8.8793 36 1 2.4324 -0.9795 -8.6836 37 1 3.2219 0.6095 -8.5422 38 1 2.5747 -2.6027 -6.8926 39 1 2.8553 -2.9721 -4.4780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490997557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:23 Heat of formation + Delta-G solvation = 70.796108 kcal Electronic energy + Delta-G solvation = -21429.499261 eV Core-core repulsion = 18304.492259 eV Total energy + Delta-G solvation = -3125.007002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.51548 -38.61987 -35.32225 -34.83929 -32.20481 -31.65403 -31.21055 -30.75988 -27.96385 -26.60430 -25.99112 -24.64139 -22.47271 -21.98404 -20.42239 -18.12661 -17.81786 -16.57689 -16.10878 -15.84554 -15.27021 -15.12397 -14.61168 -14.21652 -14.00468 -13.79240 -13.57047 -13.15982 -13.05384 -12.66874 -12.32887 -12.27309 -12.16555 -12.02045 -11.68981 -11.56615 -11.33077 -11.04860 -10.94869 -10.81063 -10.49749 -10.36876 -9.34268 -9.31651 -9.25095 -8.84633 -8.83763 -8.49258 -7.90726 -7.73819 -6.34049 -3.90890 1.08936 1.51364 2.49549 3.12774 3.23763 3.28601 3.62995 3.87283 3.98295 4.12204 4.19505 4.80884 4.85578 4.89940 5.02916 5.06637 5.23366 5.26588 5.44018 5.47062 5.51994 5.54332 5.70917 5.71362 5.77587 5.94750 6.02394 6.10721 6.22706 6.29087 6.34879 6.46285 6.59489 6.63850 6.73461 6.88259 7.03564 7.08379 7.12122 7.52220 8.01506 8.39490 8.89202 9.08572 9.30734 9.86433 10.64282 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.004047 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.081278 B = 6917.611463 C = 7078.431391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.104 4.104 3 C 0.232 3.768 4 N -0.428 5.428 5 C -0.318 4.318 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.858 5.858 9 Si 0.924 3.076 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.579 6.579 15 C -0.092 4.092 16 C -0.109 4.109 17 C -0.130 4.130 18 C -0.041 4.041 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.111 4.111 25 H 0.197 0.803 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 3.914 -15.841 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.105 4.105 3 C 0.109 3.891 4 N -0.145 5.145 5 C -0.445 4.445 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.495 5.495 9 Si 0.751 3.249 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.268 3.732 14 O -0.464 6.464 15 C -0.095 4.095 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.041 4.041 19 C -0.126 4.126 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.169 4.169 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.214 0.786 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.896 3.502 -15.527 15.942 hybrid contribution -0.052 0.179 1.099 1.114 sum 0.845 3.681 -14.428 14.914 Atomic orbital electron populations 1.24176 0.95284 1.01954 1.06971 1.22998 0.94181 0.98507 0.94862 1.18238 0.84584 0.87240 0.99057 1.43645 1.55084 1.08580 1.07220 1.19673 1.27969 1.16416 0.80485 0.87843 1.25377 0.94809 0.97142 0.99863 1.70016 1.18622 1.27062 1.33835 0.85959 0.78738 0.78988 0.81258 1.20258 1.21022 1.19333 1.17910 0.84906 0.85311 0.85022 1.90691 1.53188 1.20273 1.82223 1.22047 0.96178 0.95919 0.95405 1.20948 0.94173 1.01117 1.00302 1.21826 0.99763 1.01697 0.91638 1.19020 0.97893 0.94115 0.93102 1.21319 0.99827 0.96762 0.94649 1.20889 1.00393 0.98979 0.93770 1.19951 0.99126 0.94760 0.95909 1.20768 1.01928 1.02127 0.92041 1.20930 1.01149 0.97125 0.94818 1.21700 0.98363 0.99378 0.93471 0.78559 0.87756 0.91639 0.91998 0.90995 0.91554 0.90997 0.85897 0.85840 0.86345 0.91485 0.91761 0.91786 0.86308 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.60 19.25 29.55 0.57 -5.03 16 2 C -0.10 -2.36 11.25 -37.12 -0.42 -2.78 16 3 C 0.23 5.21 4.95 -6.83 -0.03 5.17 16 4 N -0.43 -10.90 2.58 -119.59 -0.31 -11.21 16 5 C -0.32 -8.75 9.27 -15.05 -0.14 -8.89 16 6 H 0.10 2.99 7.44 -52.49 -0.39 2.60 16 7 C 0.03 0.86 4.93 -17.44 -0.09 0.77 16 8 N -0.86 -22.41 9.28 55.50 0.51 -21.90 16 9 Si 0.92 20.38 29.59 -169.99 -5.03 15.35 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 C 0.48 11.95 6.90 -13.05 -0.09 11.86 16 14 O -0.58 -16.61 16.81 5.14 0.09 -16.53 16 15 C -0.09 -1.81 4.26 -102.57 -0.44 -2.25 16 16 C -0.11 -1.85 8.23 36.00 0.30 -1.55 16 17 C -0.13 -2.23 8.49 -37.13 -0.32 -2.54 16 18 C -0.04 -0.61 5.20 -105.06 -0.55 -1.15 16 19 C -0.11 -1.39 9.80 -39.10 -0.38 -1.77 16 20 C -0.12 -1.40 9.68 -39.65 -0.38 -1.78 16 21 C -0.10 -1.08 5.89 -104.49 -0.62 -1.70 16 22 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 23 C -0.12 -1.44 9.67 -39.65 -0.38 -1.82 16 24 C -0.11 -1.52 7.82 -39.10 -0.31 -1.82 16 25 H 0.20 3.41 7.80 -54.10 -0.42 2.99 16 26 H 0.10 2.44 6.65 -51.93 -0.35 2.09 16 27 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.07 1.09 6.38 -51.92 -0.33 0.76 16 30 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 31 H 0.07 1.10 6.70 -51.93 -0.35 0.75 16 32 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.08 -51.92 -0.42 0.04 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 1.77 5.30 -52.48 -0.28 1.49 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -31.50 334.57 -7.55 -39.05 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.94 Total: 6.01 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.91 Total: -15.82 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.21 Total: -33.11 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.53 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.50 -7.55 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490997557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.845 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds