Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46865 * 223.12346 * 3 2 1 5 5 C 1.37094 * 120.00076 * 263.88651 * 4 3 2 6 6 H 1.08001 * 119.99972 * 197.88979 * 5 4 3 7 7 C 1.38947 * 119.99899 * 17.89284 * 5 4 3 8 8 N 1.31415 * 119.99863 * 21.31349 * 7 5 4 9 9 Si 1.86806 * 120.00222 * 201.31136 * 7 5 4 10 10 H 1.48500 * 109.46511 * 59.99924 * 9 7 5 11 11 H 1.48494 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47062 * 300.00068 * 9 7 5 13 13 C 1.34784 * 120.00012 * 84.16543 * 4 3 2 14 14 O 1.21286 * 119.99817 * 179.72039 * 13 4 3 15 15 C 1.50702 * 119.99940 * 359.72436 * 13 4 3 16 16 C 1.50692 * 109.47106 * 179.97438 * 15 13 4 17 17 C 1.32560 * 120.00212 * 124.99954 * 16 15 13 18 18 C 1.47811 * 120.00406 * 179.97438 * 17 16 15 19 19 C 1.39536 * 120.13895 * 359.73026 * 18 17 16 20 20 C 1.37978 * 119.85575 * 179.71575 * 19 18 17 21 21 C 1.38341 * 120.13977 * 0.57820 * 20 19 18 22 22 C 1.50703 * 119.85847 * 179.69307 * 21 20 19 23 23 C 1.38350 * 120.28680 * 359.67438 * 21 20 19 24 24 C 1.37969 * 120.14018 * 0.04409 * 23 21 20 25 25 H 4.40640 * 5.51398 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.46883 * 103.12129 * 3 2 1 27 27 H 1.09002 * 109.47320 * 343.12319 * 3 2 1 28 28 H 0.96997 * 119.99761 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46884 * 300.00242 * 15 13 4 30 30 H 1.08998 * 109.46991 * 59.99911 * 15 13 4 31 31 H 1.07998 * 120.00187 * 304.99817 * 16 15 13 32 32 H 1.08001 * 120.00165 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.07148 * 359.97193 * 19 18 17 34 34 H 1.07996 * 119.92996 * 180.27400 * 20 19 18 35 35 H 1.08998 * 109.47419 * 269.97956 * 22 21 20 36 36 H 1.09002 * 109.46865 * 29.97966 * 22 21 20 37 37 H 1.09008 * 109.47124 * 149.97583 * 22 21 20 38 38 H 1.08006 * 119.92622 * 180.02562 * 23 21 20 39 39 H 1.08006 * 120.07173 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0090 0.9442 5 6 3.4810 2.2571 0.4955 6 1 4.0992 2.8980 1.1066 7 6 3.0373 2.6975 -0.7454 8 7 1.9833 2.1431 -1.3011 9 14 3.9391 4.0776 -1.6239 10 1 5.3463 3.6718 -1.8692 11 1 3.2720 4.3581 -2.9206 12 1 3.9162 5.2996 -0.7803 13 6 3.2467 0.7079 2.2531 14 8 3.6554 1.5411 3.0339 15 6 2.8652 -0.6641 2.7463 16 6 3.0837 -0.7413 4.2353 17 6 2.0887 -1.1024 5.0333 18 6 2.3031 -1.1787 6.4938 19 6 3.5533 -0.8767 7.0352 20 6 3.7453 -0.9442 8.3998 21 6 2.7050 -1.3218 9.2299 22 6 2.9237 -1.4000 10.7189 23 6 1.4645 -1.6275 8.6990 24 6 1.2579 -1.5583 7.3366 25 1 -1.0502 -0.0001 -0.0004 26 1 3.0092 0.2341 -1.0008 27 1 3.0099 -0.9826 0.2983 28 1 1.6739 2.4503 -2.1675 29 1 1.8150 -0.8516 2.5225 30 1 3.4819 -1.4132 2.2496 31 1 4.0509 -0.5026 4.6523 32 1 1.1216 -1.3416 4.6164 33 1 4.3676 -0.5869 6.3877 34 1 4.7111 -0.7065 8.8205 35 1 3.2587 -2.4026 10.9848 36 1 3.6812 -0.6737 11.0135 37 1 1.9893 -1.1802 11.2355 38 1 0.6563 -1.9212 9.3524 39 1 0.2891 -1.7976 6.9233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491023561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = 63.720422 kcal Electronic energy + Delta-G solvation = -20562.330235 eV Core-core repulsion = 17437.016408 eV Total energy + Delta-G solvation = -3125.313827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.32798 -38.65946 -35.46613 -34.72724 -32.38506 -31.83756 -31.21180 -30.87790 -28.56172 -26.49128 -25.66958 -24.12021 -22.82794 -21.43997 -19.54792 -18.60182 -17.88045 -16.74296 -16.40453 -16.02427 -15.28348 -14.99204 -14.53972 -14.34909 -14.18573 -13.86021 -13.53085 -13.31960 -13.02824 -12.59267 -12.47837 -12.27667 -12.15934 -12.13454 -11.73488 -11.50968 -11.20388 -10.99535 -10.89828 -10.63115 -10.54401 -10.30057 -9.80093 -9.37645 -9.27323 -8.90965 -8.88924 -8.45496 -7.87079 -7.75050 -6.33537 -3.86188 1.06762 1.48074 2.71999 3.17280 3.24716 3.28215 3.67468 3.90868 3.99756 4.03412 4.18751 4.76345 4.81589 4.90608 5.02557 5.05311 5.11508 5.19753 5.44948 5.45080 5.45862 5.51052 5.58694 5.70063 5.71797 5.89508 5.98043 6.05381 6.12472 6.16569 6.30555 6.45975 6.55884 6.61829 6.73251 6.94085 7.00905 7.05830 7.12342 7.56204 8.04852 8.42187 8.79019 9.13305 9.35384 9.90645 10.67426 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028070 B = 0.003218 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.271537 B = 8698.760827 C = 9355.640893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.114 4.114 3 C 0.231 3.769 4 N -0.441 5.441 5 C -0.316 4.316 6 H 0.103 0.897 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.921 3.079 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.454 3.546 14 O -0.581 6.581 15 C -0.112 4.112 16 C -0.083 4.083 17 C -0.151 4.151 18 C -0.040 4.040 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.199 0.801 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -10.437 12.332 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.243 3.757 14 O -0.465 6.465 15 C -0.151 4.151 16 C -0.101 4.101 17 C -0.169 4.169 18 C -0.040 4.040 19 C -0.132 4.132 20 C -0.135 4.135 21 C -0.101 4.101 22 C -0.168 4.168 23 C -0.138 4.138 24 C -0.132 4.132 25 H 0.216 0.784 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.229 -9.973 12.519 16.007 hybrid contribution -0.146 0.799 -0.777 1.124 sum -0.375 -9.174 11.742 14.905 Atomic orbital electron populations 1.24284 0.95387 1.04625 1.03654 1.23198 0.94379 0.96457 0.97515 1.18270 0.84269 0.89970 0.96729 1.43706 1.56040 1.11787 1.04463 1.19617 1.29924 0.92839 1.01967 0.87887 1.25284 0.95142 0.98805 0.98048 1.70080 1.19555 1.42831 1.17632 0.86078 0.79603 0.81120 0.78419 1.19894 1.21059 1.19867 1.19926 0.84371 0.89097 0.82316 1.90526 1.50877 1.50883 1.54214 1.20770 1.03066 0.97613 0.93696 1.23055 0.99074 0.93781 0.94230 1.21532 0.99230 1.05217 0.90965 1.19090 0.93420 0.98080 0.93392 1.21384 0.97083 0.99631 0.95104 1.20938 0.98564 1.00668 0.93343 1.19916 0.93945 1.00439 0.95849 1.20762 1.02253 1.02037 0.91755 1.20904 0.96625 1.01250 0.95049 1.21226 0.98554 1.00198 0.93215 0.78390 0.87231 0.91941 0.92101 0.89481 0.89088 0.86542 0.86585 0.85533 0.86238 0.91479 0.91729 0.91798 0.86356 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.33 19.25 29.55 0.57 -4.76 16 2 C -0.11 -2.51 10.87 -37.12 -0.40 -2.91 16 3 C 0.23 5.00 4.91 -6.83 -0.03 4.97 16 4 N -0.44 -11.04 2.60 -117.93 -0.31 -11.34 16 5 C -0.32 -8.67 9.32 -14.94 -0.14 -8.81 16 6 H 0.10 2.98 7.39 -52.49 -0.39 2.59 16 7 C 0.03 0.82 4.87 -17.47 -0.08 0.73 16 8 N -0.86 -22.56 9.50 55.50 0.53 -22.03 16 9 Si 0.92 20.42 29.60 -169.99 -5.03 15.39 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.45 10.91 7.56 -10.98 -0.08 10.83 16 14 O -0.58 -16.02 15.68 5.55 0.09 -15.93 16 15 C -0.11 -2.02 4.76 -29.04 -0.14 -2.16 16 16 C -0.08 -1.41 8.18 -36.22 -0.30 -1.71 16 17 C -0.15 -2.35 9.52 -37.58 -0.36 -2.70 16 18 C -0.04 -0.58 5.87 -105.02 -0.62 -1.20 16 19 C -0.11 -1.61 9.40 -39.19 -0.37 -1.98 16 20 C -0.12 -1.44 9.68 -39.64 -0.38 -1.83 16 21 C -0.10 -1.16 5.89 -104.54 -0.62 -1.77 16 22 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 23 C -0.12 -1.39 9.68 -39.64 -0.38 -1.77 16 24 C -0.11 -1.46 9.79 -39.20 -0.38 -1.85 16 25 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 26 H 0.11 2.50 6.45 -51.93 -0.33 2.17 16 27 H 0.06 1.10 6.69 -51.93 -0.35 0.75 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.09 1.53 7.17 -51.93 -0.37 1.16 16 30 H 0.09 1.40 7.41 -51.93 -0.38 1.02 16 31 H 0.12 1.98 6.04 -52.49 -0.32 1.66 16 32 H 0.12 1.66 7.87 -52.49 -0.41 1.24 16 33 H 0.13 1.74 6.17 -52.49 -0.32 1.42 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.08 -51.92 -0.42 0.05 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -31.64 338.01 -7.96 -39.59 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.97 Total: 6.72 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.36 Total: -17.49 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.22 Total: -33.37 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.09 Total: -15.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.64 -7.96 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.315 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds