Wall clock time and date at job start Tue Mar 31 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46970 * 43.03195 * 3 2 1 5 5 C 1.37097 * 120.00176 * 86.41771 * 4 3 2 6 6 H 1.08001 * 119.99642 * 168.95413 * 5 4 3 7 7 C 1.38946 * 120.00147 * 349.23363 * 5 4 3 8 8 N 1.31414 * 119.99666 * 342.89830 * 7 5 4 9 9 Si 1.86801 * 120.00474 * 162.89993 * 7 5 4 10 10 H 1.48497 * 109.47129 * 89.99526 * 9 7 5 11 11 H 1.48497 * 109.47330 * 209.99877 * 9 7 5 12 12 H 1.48499 * 109.46690 * 330.00149 * 9 7 5 13 13 C 1.34779 * 119.99807 * 266.41134 * 4 3 2 14 14 O 1.21288 * 120.00204 * 184.39652 * 13 4 3 15 15 C 1.50700 * 119.99765 * 4.40075 * 13 4 3 16 16 C 1.53005 * 115.55211 * 67.64936 * 15 13 4 17 17 C 1.52996 * 117.49712 * 213.31258 * 15 13 4 18 18 C 1.52999 * 117.50016 * 281.97648 * 15 13 4 19 19 H 1.08995 * 117.49888 * 359.97438 * 18 15 13 20 20 C 1.50700 * 117.49928 * 145.00350 * 18 15 13 21 21 C 1.38229 * 120.00472 * 59.72083 * 20 18 15 22 22 C 1.38236 * 120.00431 * 179.77133 * 21 20 18 23 23 C 1.38237 * 119.99411 * 0.50542 * 22 21 20 24 24 C 1.38238 * 120.00166 * 359.74731 * 23 22 21 25 25 C 1.38234 * 119.99962 * 0.02562 * 24 23 22 26 26 H 4.40634 * 5.51393 * 180.02562 * 4 1 2 27 27 H 1.08992 * 109.47277 * 283.03003 * 3 2 1 28 28 H 1.09001 * 109.47062 * 163.02648 * 3 2 1 29 29 H 0.97005 * 120.00028 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46751 * 47.52469 * 16 15 13 31 31 H 1.08993 * 109.47551 * 167.52428 * 16 15 13 32 32 H 1.08996 * 109.46926 * 287.53209 * 16 15 13 33 33 H 1.09002 * 117.50107 * 214.97768 * 17 15 13 34 34 H 1.09000 * 117.49952 * 0.02562 * 17 15 13 35 35 H 1.08008 * 119.99713 * 0.02562 * 21 20 18 36 36 H 1.07996 * 120.00385 * 180.23222 * 22 21 20 37 37 H 1.08005 * 119.99853 * 179.73064 * 23 22 21 38 38 H 1.08001 * 119.99933 * 179.97438 * 24 23 22 39 39 H 1.08000 * 119.99713 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -1.0088 -0.9426 5 6 3.2931 -0.6906 -2.2667 6 1 3.8166 -1.3674 -2.9258 7 6 2.7854 0.5052 -2.7594 8 7 1.8813 1.1675 -2.0732 9 14 3.3879 1.1715 -4.3972 10 1 2.5322 0.6451 -5.4908 11 1 3.3178 2.6548 -4.3842 12 1 4.7927 0.7442 -4.6188 13 6 3.4288 -2.2502 -0.5080 14 8 3.9084 -3.0621 -1.2708 15 6 3.1616 -2.6296 0.9258 16 6 1.6863 -2.7039 1.3248 17 6 4.1224 -3.6209 1.5851 18 6 4.1554 -2.1430 1.9824 19 1 5.0028 -1.5488 1.6404 20 6 3.6065 -1.7737 3.3363 21 6 2.9340 -2.7171 4.0904 22 6 2.4346 -2.3796 5.3344 23 6 2.5986 -1.0957 5.8199 24 6 3.2665 -0.1508 5.0636 25 6 3.7700 -0.4896 3.8216 26 1 -1.0498 -0.0001 -0.0003 27 1 3.0094 -0.2309 1.0011 28 1 3.0089 0.9837 -0.3000 29 1 1.5265 2.0021 -2.4174 30 1 1.1363 -3.2760 0.5776 31 1 1.5965 -3.1925 2.2950 32 1 1.2753 -1.6963 1.3860 33 1 3.7038 -4.3258 2.3034 34 1 4.9481 -3.9985 0.9819 35 1 2.8024 -3.7190 3.7092 36 1 1.9125 -3.1177 5.9251 37 1 2.2046 -0.8308 6.7900 38 1 3.3943 0.8523 5.4428 39 1 4.2915 0.2487 3.2306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491425840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:08 Heat of formation + Delta-G solvation = 91.632977 kcal Electronic energy + Delta-G solvation = -22334.214998 eV Core-core repulsion = 19210.111550 eV Total energy + Delta-G solvation = -3124.103448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.11284 -38.55253 -36.31965 -35.10715 -31.98997 -31.21505 -30.92810 -30.46300 -28.08069 -26.46831 -24.97569 -23.65067 -22.66662 -21.58483 -20.16572 -18.32221 -17.84561 -16.74839 -16.49852 -16.08453 -15.22131 -14.95767 -14.50895 -14.25825 -14.07937 -13.70395 -13.35165 -13.13455 -13.04190 -12.61271 -12.30430 -11.99308 -11.92006 -11.73046 -11.54620 -11.31822 -10.98733 -10.92980 -10.81454 -10.51612 -10.34659 -10.18763 -9.64415 -9.29444 -9.18768 -8.80863 -8.69211 -8.54755 -8.17279 -7.91139 -6.28455 -3.84861 1.43226 1.50578 3.13646 3.24173 3.30067 3.58077 3.83632 3.94139 4.15879 4.22981 4.31354 4.73123 4.93657 4.99406 5.02969 5.07347 5.16560 5.19947 5.31597 5.50602 5.57232 5.61649 5.71495 5.83808 6.00126 6.08294 6.15340 6.21166 6.29784 6.32166 6.39081 6.45806 6.59400 6.61452 6.73345 6.80325 6.88515 7.10466 7.15702 7.54883 8.02306 8.42831 8.96840 9.12478 9.36594 9.91272 10.66374 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021828 B = 0.005525 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.472706 B = 5066.484707 C = 5565.142956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.085 4.085 3 C 0.233 3.767 4 N -0.433 5.433 5 C -0.311 4.311 6 H 0.105 0.895 7 C 0.029 3.971 8 N -0.866 5.866 9 Si 0.925 3.075 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.480 3.520 14 O -0.583 6.583 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.144 4.144 18 C -0.115 4.115 19 H 0.114 0.886 20 C -0.035 4.035 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.113 4.113 26 H 0.195 0.805 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.268 0.732 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -1.410 14.162 14.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.088 4.088 3 C 0.110 3.890 4 N -0.150 5.150 5 C -0.438 4.438 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.268 3.732 14 O -0.467 6.467 15 C -0.117 4.117 16 C -0.176 4.176 17 C -0.181 4.181 18 C -0.134 4.134 19 H 0.132 0.868 20 C -0.035 4.035 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.131 4.131 26 H 0.212 0.788 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.606 -1.592 13.710 13.816 hybrid contribution -0.270 0.607 -0.890 1.110 sum 0.336 -0.985 12.821 12.863 Atomic orbital electron populations 1.24123 0.95259 1.04326 1.06147 1.22861 0.94062 0.96677 0.95152 1.18433 0.84617 0.94892 0.91030 1.43675 1.55334 1.07918 1.08115 1.19729 1.34755 1.04424 0.84939 0.87683 1.25283 0.95192 0.97211 0.99725 1.70028 1.24757 1.16763 1.38900 0.85951 0.79500 0.77798 0.81605 1.20440 1.20814 1.19421 1.18961 0.84731 0.82244 0.87283 1.90514 1.49243 1.49978 1.56963 1.21538 0.93832 1.04013 0.92360 1.21548 0.92062 1.03589 1.00449 1.23131 1.02058 0.91074 1.01807 1.21296 1.01290 0.98613 0.92186 0.86804 1.19145 0.96959 0.93608 0.93818 1.21090 0.98535 0.99615 0.94458 1.21069 1.00228 0.96572 0.95950 1.21075 1.00180 0.93763 0.99909 1.21092 0.98431 0.99272 0.94739 1.21021 1.00345 0.95801 0.95936 0.78796 0.91768 0.87488 0.92065 0.92256 0.92232 0.90482 0.88438 0.87786 0.85864 0.86405 0.86540 0.86252 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.95 18.83 29.55 0.56 -5.39 16 2 C -0.09 -1.94 8.51 -37.12 -0.32 -2.26 16 3 C 0.23 5.25 4.77 -6.83 -0.03 5.22 16 4 N -0.43 -10.97 2.59 -117.93 -0.31 -11.28 16 5 C -0.31 -8.56 9.46 -14.93 -0.14 -8.71 16 6 H 0.11 3.05 7.26 -52.49 -0.38 2.67 16 7 C 0.03 0.76 5.08 -17.47 -0.09 0.67 16 8 N -0.87 -22.45 8.56 55.50 0.47 -21.97 16 9 Si 0.92 20.54 29.59 -169.99 -5.03 15.51 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.48 11.75 6.87 -10.98 -0.08 11.67 16 14 O -0.58 -16.27 16.36 5.55 0.09 -16.18 16 15 C -0.11 -2.16 1.38 -155.66 -0.22 -2.38 16 16 C -0.12 -2.12 8.43 37.16 0.31 -1.81 16 17 C -0.14 -2.31 9.07 -26.69 -0.24 -2.55 16 18 C -0.12 -1.85 4.40 -91.73 -0.40 -2.25 16 19 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 20 C -0.04 -0.50 5.04 -104.63 -0.53 -1.03 16 21 C -0.12 -1.53 7.50 -39.59 -0.30 -1.82 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 23 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.50 9.74 -39.58 -0.39 -1.89 16 26 H 0.19 3.45 7.80 -54.10 -0.42 3.03 16 27 H 0.06 1.27 5.58 -51.93 -0.29 0.98 16 28 H 0.11 2.54 6.47 -51.93 -0.34 2.21 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.88 5.22 -51.93 -0.27 0.61 16 32 H 0.08 1.44 4.62 -51.93 -0.24 1.20 16 33 H 0.10 1.31 6.19 -51.93 -0.32 0.99 16 34 H 0.10 1.77 8.03 -51.93 -0.42 1.35 16 35 H 0.12 1.46 5.21 -52.48 -0.27 1.19 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -30.78 320.83 -7.60 -38.39 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.62 Total: 8.60 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.05 Total: -17.91 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.17 Total: -33.25 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.18 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.78 -7.60 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491425840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.021 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds