Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46510 * 109.47059 * 171.21641 * 3 2 1 5 5 C 1.36861 * 119.99796 * 263.49474 * 4 3 2 6 6 H 1.08002 * 119.99961 * 201.23047 * 5 4 3 7 7 C 1.39048 * 120.00503 * 21.23239 * 5 4 3 8 8 N 1.31366 * 119.99789 * 10.27509 * 7 5 4 9 9 Si 1.86804 * 120.00260 * 190.26941 * 7 5 4 10 10 H 1.48492 * 109.46862 * 60.00128 * 9 7 5 11 11 H 1.48502 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46869 * 300.00131 * 9 7 5 13 13 C 1.34773 * 119.99682 * 83.49263 * 4 3 2 14 14 O 1.21591 * 120.00248 * 5.49472 * 13 4 3 15 15 C 1.47730 * 119.99644 * 185.49968 * 13 4 3 16 16 C 1.39661 * 120.15508 * 44.56345 * 15 13 4 17 17 C 1.37906 * 119.84865 * 179.97438 * 16 15 13 18 18 C 1.50702 * 119.92502 * 179.97438 * 17 16 15 19 19 C 1.38401 * 120.15259 * 0.02845 * 17 16 15 20 20 C 1.38355 * 120.30233 * 359.69464 * 19 17 16 21 21 C 1.37962 * 120.15091 * 0.55819 * 20 19 17 22 22 C 1.50701 * 120.07587 * 179.74564 * 21 20 19 23 23 C 1.52998 * 117.49732 * 54.70684 * 22 21 20 24 24 C 1.52995 * 60.00248 * 252.51180 * 23 22 21 25 25 H 4.40648 * 5.51440 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.47343 * 51.21991 * 3 2 1 27 27 H 1.08995 * 109.47548 * 291.21415 * 3 2 1 28 28 H 0.96995 * 119.99836 * 179.97438 * 8 7 5 29 29 H 1.07999 * 120.07390 * 0.02562 * 16 15 13 30 30 H 1.09005 * 109.46505 * 90.00526 * 18 17 16 31 31 H 1.09002 * 109.47182 * 209.99683 * 18 17 16 32 32 H 1.08994 * 109.47424 * 330.00839 * 18 17 16 33 33 H 1.08003 * 119.84834 * 179.97438 * 19 17 16 34 34 H 1.08002 * 119.92086 * 180.30323 * 20 19 17 35 35 H 1.08992 * 115.56038 * 200.39981 * 22 21 20 36 36 H 1.09004 * 117.49739 * 145.01962 * 23 22 21 37 37 H 1.08999 * 117.50313 * 0.02562 * 23 22 21 38 38 H 1.09004 * 117.49643 * 107.49284 * 24 23 22 39 39 H 1.09000 * 117.49984 * 252.49018 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3660 -0.2109 5 6 3.4882 1.7797 -1.4664 6 1 4.1502 2.6240 -1.5900 7 6 2.9961 1.1129 -2.5830 8 7 2.0402 0.2221 -2.4477 9 14 3.6943 1.4840 -4.2755 10 1 5.1480 1.1811 -4.2885 11 1 3.0046 0.6469 -5.2899 12 1 3.4849 2.9193 -4.5935 13 6 3.2332 2.2145 0.8314 14 8 3.0143 1.8192 1.9602 15 6 3.6081 3.6250 0.6024 16 6 3.0209 4.3468 -0.4391 17 6 3.3751 5.6633 -0.6468 18 6 2.7430 6.4436 -1.7705 19 6 4.3107 6.2692 0.1735 20 6 4.8922 5.5618 1.2106 21 6 4.5509 4.2426 1.4266 22 6 5.1895 3.4719 2.5532 23 6 5.0929 4.0665 3.9596 24 6 6.4282 4.0814 3.2129 25 1 -1.0502 -0.0004 0.0003 26 1 3.0096 -0.6429 -0.8011 27 1 3.0095 -0.3710 0.9580 28 1 1.6967 -0.2427 -3.2267 29 1 2.2904 3.8753 -1.0797 30 1 1.8391 6.9338 -1.4087 31 1 3.4450 7.1958 -2.1304 32 1 2.4875 5.7657 -2.5849 33 1 4.5848 7.3004 0.0061 34 1 5.6180 6.0422 1.8501 35 1 5.1506 2.3866 2.4619 36 1 4.9903 3.3722 4.7936 37 1 4.5671 5.0149 4.0701 38 1 6.7812 5.0399 2.8321 39 1 7.2043 3.3972 3.5558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491426229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = 80.469792 kcal Electronic energy + Delta-G solvation = -22201.706221 eV Core-core repulsion = 19077.118701 eV Total energy + Delta-G solvation = -3124.587520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.77909 -37.94551 -36.54380 -35.07945 -32.09792 -31.81407 -31.47077 -30.31557 -26.77080 -26.46020 -24.89712 -22.81625 -22.31258 -21.98998 -19.90787 -19.08063 -17.79925 -16.88389 -16.13939 -16.02597 -15.17179 -14.57969 -14.41055 -14.17093 -13.77447 -13.57662 -13.44579 -13.36318 -12.76836 -12.25462 -12.06223 -11.88383 -11.77888 -11.64027 -11.50073 -11.26977 -11.10636 -10.89256 -10.64176 -10.59468 -10.50731 -10.13899 -9.97294 -9.42531 -9.31900 -8.72661 -8.52251 -8.18875 -7.94700 -7.82324 -6.40037 -4.01976 1.64145 1.87775 3.08296 3.16320 3.17660 3.66705 3.89940 4.08331 4.12363 4.28285 4.53086 4.90796 4.95174 5.00902 5.20557 5.25867 5.36528 5.44063 5.54267 5.61169 5.70034 5.85872 5.89879 5.94504 6.03699 6.10485 6.16618 6.20915 6.36485 6.49462 6.55500 6.59386 6.71131 6.91867 6.94860 7.08890 7.16767 7.22927 7.33214 7.50009 7.62427 8.29835 8.95977 8.98913 9.37595 9.78117 10.57635 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.007370 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.368220 B = 3798.287598 C = 4855.728737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.094 4.094 3 C 0.240 3.760 4 N -0.429 5.429 5 C -0.335 4.335 6 H 0.102 0.898 7 C 0.037 3.963 8 N -0.859 5.859 9 Si 0.920 3.080 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.497 3.503 14 O -0.593 6.593 15 C -0.076 4.076 16 C -0.063 4.063 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.134 4.134 21 C -0.024 4.024 22 C -0.099 4.099 23 C -0.164 4.164 24 C -0.187 4.187 25 H 0.197 0.803 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.272 0.728 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 7.831 2.366 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.096 4.096 3 C 0.117 3.883 4 N -0.145 5.145 5 C -0.463 4.463 6 H 0.119 0.881 7 C -0.169 4.169 8 N -0.495 5.495 9 Si 0.746 3.254 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.287 3.713 14 O -0.479 6.479 15 C -0.079 4.079 16 C -0.081 4.081 17 C -0.110 4.110 18 C -0.166 4.166 19 C -0.133 4.133 20 C -0.152 4.152 21 C -0.026 4.026 22 C -0.117 4.117 23 C -0.201 4.201 24 C -0.224 4.224 25 H 0.214 0.786 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.146 7.448 2.746 8.956 hybrid contribution -0.046 0.158 -1.183 1.195 sum 4.100 7.606 1.563 8.781 Atomic orbital electron populations 1.24190 0.95329 1.02417 1.07770 1.23131 0.94301 0.97997 0.94153 1.18148 0.84151 0.85514 1.00438 1.43554 1.54712 1.09137 1.07136 1.19682 1.27984 1.17361 0.81242 0.88072 1.25346 0.95025 0.96632 0.99872 1.69988 1.23449 1.25078 1.31032 0.86091 0.79186 0.78744 0.81356 1.19747 1.20821 1.19644 1.18081 0.83146 0.85090 0.84996 1.90638 1.56690 1.77754 1.22816 1.19802 0.97377 0.94995 0.95710 1.21401 0.98677 0.92640 0.95432 1.19799 0.98542 0.94569 0.98072 1.20725 1.00012 0.99417 0.96403 1.20931 0.97501 0.99149 0.95698 1.20761 1.01476 0.93923 0.99057 1.19092 0.95385 0.93171 0.94904 1.21017 0.99283 0.99821 0.91578 1.22874 0.99737 1.02492 0.94954 1.23068 0.91441 1.02683 1.05166 0.78571 0.86850 0.91762 0.91751 0.84390 0.91749 0.92112 0.91404 0.86721 0.86405 0.86215 0.88818 0.89103 0.88859 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.34 19.25 29.55 0.57 -5.77 16 2 C -0.09 -2.33 11.54 -37.12 -0.43 -2.76 16 3 C 0.24 5.83 5.10 -6.82 -0.03 5.80 16 4 N -0.43 -10.72 2.60 -119.05 -0.31 -11.03 16 5 C -0.34 -8.23 7.48 -15.01 -0.11 -8.34 16 6 H 0.10 2.44 6.11 -52.49 -0.32 2.12 16 7 C 0.04 0.89 5.12 -17.45 -0.09 0.80 16 8 N -0.86 -21.58 9.03 55.50 0.50 -21.08 16 9 Si 0.92 19.01 29.57 -169.99 -5.03 13.99 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.50 12.29 6.49 -12.38 -0.08 12.21 16 14 O -0.59 -15.66 14.83 5.29 0.08 -15.58 16 15 C -0.08 -1.66 4.99 -104.97 -0.52 -2.18 16 16 C -0.06 -1.27 7.43 -39.17 -0.29 -1.57 16 17 C -0.11 -1.86 5.87 -104.68 -0.61 -2.47 16 18 C -0.11 -1.49 10.01 36.01 0.36 -1.13 16 19 C -0.11 -1.76 9.69 -39.48 -0.38 -2.14 16 20 C -0.13 -2.17 9.19 -39.64 -0.36 -2.53 16 21 C -0.02 -0.47 5.66 -104.20 -0.59 -1.06 16 22 C -0.10 -1.78 5.07 -91.77 -0.47 -2.24 16 23 C -0.16 -2.46 10.10 -26.73 -0.27 -2.73 16 24 C -0.19 -2.58 9.84 -26.73 -0.26 -2.85 16 25 H 0.20 3.66 7.80 -54.08 -0.42 3.24 16 26 H 0.11 2.78 6.31 -51.93 -0.33 2.45 16 27 H 0.06 1.51 7.55 -51.93 -0.39 1.12 16 28 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.14 3.01 6.99 -52.49 -0.37 2.64 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 34 H 0.12 1.59 6.17 -52.49 -0.32 1.26 16 35 H 0.12 2.46 6.52 -51.93 -0.34 2.12 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -28.48 329.04 -8.29 -36.77 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.91 Total: 10.94 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -3.58 Total: -18.96 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.19 Total: -32.11 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.08 Total: -15.58 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.48 -8.29 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491426229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.236 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds