Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37969 * 119.58276 * 2 1 4 4 C 1.39275 * 119.08878 * 180.02562 * 3 2 1 5 5 O 1.35740 * 120.84544 * 179.97438 * 4 3 2 6 6 C 1.42902 * 116.99574 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46697 * 179.97438 * 6 5 4 8 8 C 1.38630 * 119.74253 * 90.00487 * 7 6 5 9 9 C 1.37623 * 120.24117 * 180.27159 * 8 7 6 10 10 C 1.40707 * 119.74849 * 359.52215 * 9 8 7 11 11 C 1.41400 * 120.24843 * 180.22492 * 10 9 8 12 12 H 1.07994 * 120.00480 * 204.52708 * 11 10 9 13 13 C 1.39950 * 119.99509 * 24.53120 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.72383 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.72017 * 13 11 10 16 16 H 1.48499 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46931 * 119.99981 * 15 13 11 18 18 H 1.48490 * 109.47155 * 239.99623 * 15 13 11 19 19 C 1.40715 * 119.51064 * 0.47652 * 10 9 8 20 20 C 1.37618 * 119.74364 * 359.74989 * 19 10 9 21 21 C 1.39267 * 118.30371 * 0.25365 * 4 3 2 22 22 C 1.37975 * 119.08966 * 359.49891 * 21 4 3 23 23 C 1.50699 * 119.58637 * 180.22862 * 22 21 4 24 24 N 1.31954 * 119.58943 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.46789 * 89.99980 * 1 2 3 26 26 H 1.08996 * 109.47024 * 209.99543 * 1 2 3 27 27 H 1.08997 * 109.47408 * 330.00030 * 1 2 3 28 28 H 1.07998 * 120.46357 * 0.04338 * 3 2 1 29 29 H 1.09004 * 109.46817 * 60.00371 * 6 5 4 30 30 H 1.08991 * 109.47573 * 300.00059 * 6 5 4 31 31 H 1.08001 * 119.88189 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.12205 * 179.72192 * 9 8 7 33 33 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.12804 * 179.73261 * 19 10 9 35 35 H 1.08002 * 119.87235 * 180.02562 * 20 19 10 36 36 H 1.07996 * 120.44931 * 179.73380 * 21 4 3 37 37 H 1.08997 * 109.47266 * 270.28299 * 23 22 21 38 38 H 1.09012 * 109.46898 * 30.28202 * 23 22 21 39 39 H 1.08997 * 109.46974 * 150.27680 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1882 1.1998 0.0000 4 6 3.5809 1.1878 -0.0005 5 8 4.2869 2.3472 -0.0011 6 6 5.7118 2.2390 -0.0010 7 6 6.3202 3.6177 -0.0023 8 6 6.5980 4.2480 1.2008 9 6 7.1485 5.5093 1.2116 10 6 7.4385 6.1550 -0.0045 11 6 8.0085 7.4490 -0.0057 12 1 7.8740 8.0976 -0.8586 13 6 8.7472 7.8891 1.0985 14 7 9.2065 7.0236 1.9653 15 14 9.0772 9.7125 1.3346 16 1 8.4537 10.4763 0.2241 17 1 8.4973 10.1572 2.6273 18 1 10.5424 9.9536 1.3404 19 6 7.1522 5.5055 -1.2196 20 6 6.5974 4.2462 -1.2065 21 6 4.2306 -0.0440 -0.0065 22 6 3.4772 -1.1998 -0.0011 23 6 4.1687 -2.5388 -0.0022 24 7 2.1586 -1.1475 -0.0005 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5138 28 1 1.6490 2.1356 0.0007 29 1 6.0351 1.6987 -0.8909 30 1 6.0352 1.6995 0.8891 31 1 6.3780 3.7490 2.1330 32 1 7.3599 6.0003 2.1500 33 1 9.7182 7.3288 2.7308 34 1 7.3668 5.9937 -2.1588 35 1 6.3772 3.7457 -2.1378 36 1 5.3094 -0.0937 -0.0114 37 1 4.3351 -2.8609 -1.0301 38 1 5.1265 -2.4535 0.5114 39 1 3.5449 -3.2703 0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547492221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -3.464916 kcal Electronic energy + Delta-G solvation = -20479.863741 eV Core-core repulsion = 17351.636539 eV Total energy + Delta-G solvation = -3128.227202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55442 -38.46026 -37.29911 -33.97416 -33.74690 -31.68010 -30.40667 -29.40669 -29.11581 -27.51168 -26.55954 -23.97304 -21.96293 -21.68686 -21.13030 -20.07856 -17.48457 -17.41225 -16.83937 -15.69440 -15.58604 -15.31668 -14.56445 -14.47154 -14.27337 -13.94881 -13.36224 -13.33411 -13.24759 -13.04829 -12.62018 -12.43164 -12.16809 -12.07442 -11.94105 -11.69814 -11.32321 -11.23958 -11.15708 -10.92913 -10.55763 -10.52151 -9.74581 -9.52117 -9.49389 -9.25988 -8.82583 -8.60087 -7.60620 -7.50335 -6.90666 -4.50060 1.11908 1.48529 2.47012 2.96079 2.98289 3.01403 3.06393 3.65967 3.77856 3.83323 4.18792 4.52110 4.64895 4.96049 5.15422 5.21342 5.42110 5.45005 5.45552 5.50445 5.52429 5.53586 5.58970 5.64680 5.79898 5.91996 6.00166 6.08889 6.18532 6.26362 6.27444 6.66822 6.83095 6.94068 7.13785 7.22245 7.47703 7.55648 7.72230 7.92537 7.96053 8.09170 8.15456 8.50385 8.75189 8.82927 10.03446 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.002892 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.217025 B = 9679.155192 C = 9960.485310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.159 3.841 3 C -0.220 4.220 4 C 0.186 3.814 5 O -0.301 6.301 6 C 0.125 3.875 7 C -0.237 4.237 8 C -0.075 4.075 9 C -0.170 4.170 10 C 0.119 3.881 11 C -0.455 4.455 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.786 5.786 15 Si 0.910 3.090 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.273 1.273 19 C -0.230 4.230 20 C -0.063 4.063 21 C -0.273 4.273 22 C 0.163 3.837 23 C -0.102 4.102 24 N -0.519 5.519 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.282 0.718 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 -11.281 -1.311 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.023 3.977 3 C -0.241 4.241 4 C 0.131 3.869 5 O -0.212 6.212 6 C 0.052 3.948 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.189 4.189 10 C 0.116 3.884 11 C -0.484 4.484 12 H 0.099 0.901 13 C -0.144 4.144 14 N -0.410 5.410 15 Si 0.734 3.266 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.198 1.198 19 C -0.250 4.250 20 C -0.082 4.082 21 C -0.294 4.294 22 C 0.026 3.974 23 C -0.160 4.160 24 N -0.234 5.234 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.001 -11.807 -1.096 14.887 hybrid contribution 1.033 1.512 0.173 1.839 sum -7.968 -10.295 -0.923 13.051 Atomic orbital electron populations 1.20687 0.88659 1.03382 1.03044 1.20987 0.96704 0.87398 0.92610 1.21274 0.91709 1.00127 1.10978 1.19496 0.91865 0.86129 0.89387 1.86363 1.21904 1.27051 1.85871 1.21554 0.75803 0.97460 0.99954 1.18590 1.14329 0.96736 0.94178 1.20526 0.98334 0.95463 0.95043 1.21297 1.03737 0.95073 0.98832 1.17696 0.87589 0.92169 0.90934 1.19716 1.27579 0.99233 1.01885 0.90098 1.25983 0.93596 1.00106 0.94707 1.69828 1.24604 1.36006 1.10588 0.86228 0.78719 0.82158 0.79492 1.18256 1.19551 1.19849 1.20953 1.11041 0.95836 0.97163 1.20372 0.97669 0.94986 0.95129 1.22043 1.01781 0.92505 1.13071 1.20975 0.89220 0.95082 0.92128 1.20704 0.99715 0.92554 1.03008 1.67350 1.09163 1.29138 1.17789 0.90395 0.90500 0.90627 0.84347 0.92673 0.92577 0.89353 0.86236 0.90661 0.88687 0.89337 0.84463 0.90415 0.90746 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.17 36.01 0.37 -0.58 16 2 C 0.16 2.13 6.78 -82.63 -0.56 1.57 16 3 C -0.22 -3.21 9.70 -39.29 -0.38 -3.59 16 4 C 0.19 3.01 6.74 -38.81 -0.26 2.75 16 5 O -0.30 -5.58 10.14 -18.93 -0.19 -5.78 16 6 C 0.13 2.25 4.88 36.01 0.18 2.43 16 7 C -0.24 -5.16 5.53 -104.33 -0.58 -5.74 16 8 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 9 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 10 C 0.12 3.11 5.57 -106.83 -0.60 2.51 16 11 C -0.46 -11.76 9.06 -37.74 -0.34 -12.11 16 12 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 13 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 14 N -0.79 -19.67 10.95 55.55 0.61 -19.06 16 15 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 16 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 20 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 21 C -0.27 -3.92 8.74 -39.30 -0.34 -4.26 16 22 C 0.16 2.20 6.78 -82.64 -0.56 1.64 16 23 C -0.10 -0.99 10.17 36.00 0.37 -0.63 16 24 N -0.52 -7.41 10.18 -5.81 -0.06 -7.47 16 25 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.06 0.90 7.64 -51.93 -0.40 0.50 16 30 H 0.06 0.93 7.66 -51.93 -0.40 0.53 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 33 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 34 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.14 1.77 6.47 -52.49 -0.34 1.43 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.62 8.08 -51.92 -0.42 0.20 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -28.24 334.35 -9.15 -37.39 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.23 Total: 5.67 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -4.29 Total: -28.82 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.55 Total: -26.53 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.19 Total: -5.78 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.24 -9.15 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547492221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.925 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds