Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37969 * 119.58276 * 2 1 4 4 C 1.39275 * 119.08878 * 180.02562 * 3 2 1 5 5 O 1.35740 * 120.84544 * 179.97438 * 4 3 2 6 6 C 1.42902 * 116.99574 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46697 * 179.97438 * 6 5 4 8 8 C 1.38630 * 119.74253 * 90.00487 * 7 6 5 9 9 C 1.37623 * 120.24117 * 180.27159 * 8 7 6 10 10 C 1.40707 * 119.74849 * 359.52215 * 9 8 7 11 11 C 1.41400 * 120.24843 * 180.22492 * 10 9 8 12 12 H 1.07994 * 120.00480 * 204.52708 * 11 10 9 13 13 C 1.39950 * 119.99509 * 24.53120 * 11 10 9 14 14 N 1.30821 * 119.99991 * 17.72383 * 13 11 10 15 15 Si 1.86800 * 119.99756 * 197.72017 * 13 11 10 16 16 H 1.48499 * 109.47128 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46931 * 119.99981 * 15 13 11 18 18 H 1.48490 * 109.47155 * 239.99623 * 15 13 11 19 19 C 1.40715 * 119.51064 * 0.47652 * 10 9 8 20 20 C 1.37618 * 119.74364 * 359.74989 * 19 10 9 21 21 C 1.39267 * 118.30371 * 0.25365 * 4 3 2 22 22 C 1.37975 * 119.08966 * 359.49891 * 21 4 3 23 23 C 1.50699 * 119.58637 * 180.22862 * 22 21 4 24 24 N 1.31954 * 119.58943 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.46789 * 89.99980 * 1 2 3 26 26 H 1.08996 * 109.47024 * 209.99543 * 1 2 3 27 27 H 1.08997 * 109.47408 * 330.00030 * 1 2 3 28 28 H 1.07998 * 120.46357 * 0.04338 * 3 2 1 29 29 H 1.09004 * 109.46817 * 60.00371 * 6 5 4 30 30 H 1.08991 * 109.47573 * 300.00059 * 6 5 4 31 31 H 1.08001 * 119.88189 * 0.02562 * 8 7 6 32 32 H 1.08002 * 120.12205 * 179.72192 * 9 8 7 33 33 H 0.97005 * 119.99803 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.12804 * 179.73261 * 19 10 9 35 35 H 1.08002 * 119.87235 * 180.02562 * 20 19 10 36 36 H 1.07996 * 120.44931 * 179.73380 * 21 4 3 37 37 H 1.08997 * 109.47266 * 270.28299 * 23 22 21 38 38 H 1.09012 * 109.46898 * 30.28202 * 23 22 21 39 39 H 1.08997 * 109.46974 * 150.27680 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1882 1.1998 0.0000 4 6 3.5809 1.1878 -0.0005 5 8 4.2869 2.3472 -0.0011 6 6 5.7118 2.2390 -0.0010 7 6 6.3202 3.6177 -0.0023 8 6 6.5980 4.2480 1.2008 9 6 7.1485 5.5093 1.2116 10 6 7.4385 6.1550 -0.0045 11 6 8.0085 7.4490 -0.0057 12 1 7.8740 8.0976 -0.8586 13 6 8.7472 7.8891 1.0985 14 7 9.2065 7.0236 1.9653 15 14 9.0772 9.7125 1.3346 16 1 8.4537 10.4763 0.2241 17 1 8.4973 10.1572 2.6273 18 1 10.5424 9.9536 1.3404 19 6 7.1522 5.5055 -1.2196 20 6 6.5974 4.2462 -1.2065 21 6 4.2306 -0.0440 -0.0065 22 6 3.4772 -1.1998 -0.0011 23 6 4.1687 -2.5388 -0.0022 24 7 2.1586 -1.1475 -0.0005 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5138 28 1 1.6490 2.1356 0.0007 29 1 6.0351 1.6987 -0.8909 30 1 6.0352 1.6995 0.8891 31 1 6.3780 3.7490 2.1330 32 1 7.3599 6.0003 2.1500 33 1 9.7182 7.3288 2.7308 34 1 7.3668 5.9937 -2.1588 35 1 6.3772 3.7457 -2.1378 36 1 5.3094 -0.0937 -0.0114 37 1 4.3351 -2.8609 -1.0301 38 1 5.1265 -2.4535 0.5114 39 1 3.5449 -3.2703 0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547492221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -17.103576 kcal Electronic energy + Delta-G solvation = -20480.455158 eV Core-core repulsion = 17351.636539 eV Total energy + Delta-G solvation = -3128.818619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67808 -39.91173 -38.91589 -35.76506 -34.68280 -33.07990 -31.91894 -31.24807 -29.94412 -29.01288 -27.71845 -25.60980 -23.04867 -23.00055 -22.81901 -21.75818 -19.29976 -18.65872 -18.04791 -17.27357 -16.87007 -16.66150 -16.07210 -15.68328 -15.62265 -15.26807 -14.96653 -14.60608 -14.27148 -14.07042 -14.01430 -13.88842 -13.41177 -13.24986 -13.05269 -12.94580 -12.89464 -12.75638 -12.57441 -12.28368 -12.10241 -12.06093 -11.51241 -11.34128 -11.06703 -10.55914 -9.86803 -9.77235 -9.46862 -9.36996 -8.71726 -6.42336 0.08268 0.35401 0.73831 1.08005 1.37051 1.43379 1.52664 2.17245 2.24110 2.73219 2.75741 3.29015 3.63381 3.68890 3.90776 4.07148 4.08835 4.16320 4.26548 4.42344 4.44670 4.51737 4.57484 4.61379 4.76511 4.77921 4.82456 4.96103 4.97577 5.09526 5.13423 5.21206 5.23870 5.27691 5.36837 5.62111 5.66797 5.84421 6.03034 6.10997 6.29389 6.33177 6.61739 6.86037 6.94307 7.05329 8.25466 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.002892 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.217025 B = 9679.155192 C = 9960.485310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.156 3.844 3 C -0.233 4.233 4 C 0.162 3.838 5 O -0.323 6.323 6 C 0.132 3.868 7 C -0.231 4.231 8 C -0.081 4.081 9 C -0.194 4.194 10 C 0.087 3.913 11 C -0.493 4.493 12 H 0.079 0.921 13 C 0.035 3.965 14 N -0.818 5.818 15 Si 0.984 3.016 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.263 1.263 19 C -0.247 4.247 20 C -0.066 4.066 21 C -0.279 4.279 22 C 0.157 3.843 23 C -0.100 4.100 24 N -0.532 5.532 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -12.636 -1.564 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.020 3.980 3 C -0.254 4.254 4 C 0.108 3.892 5 O -0.235 6.235 6 C 0.058 3.942 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.214 4.214 10 C 0.085 3.915 11 C -0.522 4.522 12 H 0.097 0.903 13 C -0.181 4.181 14 N -0.443 5.443 15 Si 0.805 3.195 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.188 1.188 19 C -0.266 4.266 20 C -0.084 4.084 21 C -0.299 4.299 22 C 0.020 3.980 23 C -0.157 4.157 24 N -0.248 5.248 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.163 0.837 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.169 0.831 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.785 -13.192 -1.354 16.480 hybrid contribution 1.152 1.725 0.220 2.086 sum -8.633 -11.467 -1.134 14.398 Atomic orbital electron populations 1.20793 0.86007 1.04480 1.04248 1.21572 0.98483 0.86741 0.91204 1.21502 0.91423 1.01067 1.11428 1.19756 0.92425 0.85965 0.91046 1.86257 1.21745 1.28622 1.86863 1.21442 0.75904 0.95065 1.01759 1.19006 1.12728 0.98141 0.93368 1.20785 0.97718 0.94843 0.96633 1.21270 1.05526 0.96390 0.98169 1.18046 0.88594 0.93002 0.91876 1.19944 1.29370 0.99796 1.03104 0.90333 1.26824 0.92752 1.04637 0.93868 1.69869 1.25150 1.38082 1.11215 0.85124 0.78888 0.76113 0.79412 1.18126 1.18835 1.18807 1.21173 1.11640 0.96886 0.96908 1.20710 0.96668 0.94365 0.96676 1.22226 1.02574 0.92113 1.13017 1.21580 0.89192 0.96400 0.90843 1.20806 1.00153 0.90596 1.04194 1.67486 1.09699 1.29477 1.18099 0.88980 0.89826 0.89117 0.83708 0.90585 0.91103 0.87628 0.87865 0.89849 0.88018 0.86453 0.83125 0.89024 0.89161 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.24 0.72 -0.90 16 2 C 0.16 3.91 6.78 42.48 0.29 4.19 16 3 C -0.23 -6.53 9.70 22.46 0.22 -6.31 16 4 C 0.16 5.03 6.74 22.77 0.15 5.18 16 5 O -0.32 -11.58 10.14 -90.64 -0.92 -12.50 16 6 C 0.13 4.47 4.88 71.24 0.35 4.82 16 7 C -0.23 -9.87 5.53 -19.68 -0.11 -9.98 16 8 C -0.08 -3.79 9.67 22.22 0.21 -3.58 16 9 C -0.19 -10.26 8.70 22.73 0.20 -10.06 16 10 C 0.09 4.73 5.57 -21.29 -0.12 4.61 16 11 C -0.49 -26.43 9.06 23.46 0.21 -26.22 16 12 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 13 C 0.04 1.75 5.14 85.26 0.44 2.19 16 14 N -0.82 -42.09 10.95 21.83 0.24 -41.85 16 15 Si 0.98 37.47 29.59 68.60 2.03 39.50 16 16 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 19 C -0.25 -12.11 9.80 22.73 0.22 -11.89 16 20 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 21 C -0.28 -7.44 8.74 22.45 0.20 -7.25 16 22 C 0.16 3.88 6.78 42.48 0.29 4.17 16 23 C -0.10 -1.66 10.17 71.24 0.72 -0.94 16 24 N -0.53 -14.13 10.18 -172.31 -1.75 -15.88 16 25 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.22 8.08 -2.39 -0.02 1.21 16 28 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 29 H 0.08 2.26 7.64 -2.38 -0.02 2.24 16 30 H 0.07 2.18 7.66 -2.39 -0.02 2.17 16 31 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 33 H 0.29 13.39 8.30 -92.70 -0.77 12.62 16 34 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.15 3.49 6.47 -2.91 -0.02 3.47 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.21 8.08 -2.38 -0.02 1.19 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.18 334.35 4.85 -57.32 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 1.05 Total: 28.07 kcal Atomic # 6 Polarization: -58.87 SS G_CDS: 4.21 Total: -54.66 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -1.52 Total: -57.74 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.92 Total: -12.50 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -62.18 4.85 -57.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547492221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.221 kcal (2) G-P(sol) polarization free energy of solvation -62.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds