Wall clock time and date at job start Tue Mar 31 2020 05:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48506 * 109.46818 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.47067 * 29.99918 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00295 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46769 * 64.99669 * 12 11 10 14 14 C 1.46906 * 110.99793 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.46871 * 35.00433 * 14 13 12 16 16 C 1.52994 * 109.47113 * 275.00325 * 14 13 12 17 17 O 1.42902 * 109.47338 * 294.99847 * 16 14 13 18 18 C 1.50696 * 109.46865 * 155.00158 * 14 13 12 19 19 C 1.38265 * 119.98715 * 219.99804 * 18 14 13 20 20 C 1.38230 * 120.05454 * 180.02562 * 19 18 14 21 21 C 1.38215 * 120.02117 * 359.95972 * 20 19 18 22 22 C 1.38440 * 119.97764 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.02570 * 179.97438 * 22 21 20 24 24 C 1.38171 * 119.98865 * 39.72929 * 18 14 13 25 25 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 27 27 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 28 28 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 29 29 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 30 30 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 31 31 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 32 32 H 1.00899 * 111.00283 * 303.95539 * 13 12 11 33 33 H 1.08998 * 109.47596 * 55.00036 * 16 14 13 34 34 H 1.09007 * 109.47272 * 175.00278 * 16 14 13 35 35 H 0.96703 * 114.00717 * 179.97438 * 17 16 14 36 36 H 1.08007 * 119.97772 * 0.02562 * 19 18 14 37 37 H 1.07995 * 119.98707 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.01028 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.01529 * 359.97412 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 7 3.4079 -5.8871 1.2583 14 6 4.4593 -6.9124 1.2941 15 1 4.8614 -7.0557 0.2912 16 6 3.8696 -8.2302 1.8003 17 8 3.4479 -8.0736 3.1567 18 6 5.5630 -6.4679 2.2190 19 6 6.8836 -6.6947 1.8782 20 6 7.8970 -6.2880 2.7257 21 6 7.5910 -5.6532 3.9147 22 6 6.2691 -5.4252 4.2569 23 9 5.9690 -4.8052 5.4192 24 6 5.2549 -5.8287 3.4046 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 0.9451 -4.9831 -0.8877 29 1 0.9444 -4.9818 0.8922 30 1 2.1818 -6.9376 -0.0860 31 1 3.3214 -5.7962 -0.8388 32 1 3.7965 -4.9661 1.3954 33 1 3.0143 -8.5063 1.1835 34 1 4.6263 -9.0127 1.7432 35 1 3.0624 -8.8717 3.5435 36 1 7.1237 -7.1902 0.9489 37 1 8.9281 -6.4662 2.4586 38 1 8.3830 -5.3351 4.5766 39 1 4.2235 -5.6473 3.6685 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549543328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:00 Heat of formation + Delta-G solvation = -118.734839 kcal Electronic energy + Delta-G solvation = -21891.646287 eV Core-core repulsion = 18327.651382 eV Total energy + Delta-G solvation = -3563.994906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.78684 -39.61932 -37.44927 -36.68770 -35.07615 -32.76981 -31.75477 -30.57336 -28.98035 -27.43956 -26.39629 -23.58755 -22.74547 -22.30522 -21.28790 -20.50705 -17.73788 -17.27291 -16.40291 -16.31087 -16.16765 -15.82079 -15.55843 -15.29065 -15.26192 -14.42707 -14.26059 -13.99092 -13.77737 -13.70331 -13.15228 -12.94620 -12.74140 -12.38063 -12.05006 -11.88517 -11.68950 -11.38527 -11.25829 -10.86339 -10.77556 -10.72126 -10.54460 -10.02466 -9.98549 -9.09407 -8.95170 -8.81304 -8.69644 -8.26152 -8.15933 -6.09277 -4.10922 1.09842 1.23530 3.31576 3.36681 3.42346 3.54163 4.10127 4.20357 4.31772 4.36629 4.57364 4.78079 4.91358 5.01791 5.07811 5.13894 5.27383 5.34328 5.36276 5.45426 5.47891 5.49083 5.69991 5.82538 5.99987 6.05549 6.17841 6.18093 6.21746 6.34052 6.46870 6.89751 7.12006 7.16530 7.45337 7.57821 7.65929 7.80554 8.16745 8.58674 9.01969 9.53905 11.02272 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004125 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.760591 B = 6786.406779 C = 7931.712687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.063 3.937 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.125 3.875 15 H 0.066 0.934 16 C 0.094 3.906 17 O -0.552 6.552 18 C -0.056 4.056 19 C -0.128 4.128 20 C -0.098 4.098 21 C -0.157 4.157 22 C 0.092 3.908 23 F -0.141 7.141 24 C -0.106 4.106 25 H 0.264 0.736 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.360 0.640 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.371 0.629 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.120 -18.991 4.181 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.015 4.015 12 C -0.064 4.064 13 N -0.305 5.305 14 C 0.015 3.985 15 H 0.084 0.916 16 C 0.015 3.985 17 O -0.356 6.356 18 C -0.057 4.057 19 C -0.147 4.147 20 C -0.117 4.117 21 C -0.176 4.176 22 C 0.073 3.927 23 F -0.119 7.119 24 C -0.125 4.125 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.181 0.819 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.216 0.784 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.912 -18.561 4.467 22.502 hybrid contribution 0.388 0.761 -0.412 0.948 sum 12.300 -17.800 4.055 22.013 Atomic orbital electron populations 1.69957 1.06105 1.27138 1.50549 1.24937 0.94955 0.99396 0.95141 0.86354 0.79729 0.82346 0.78176 1.20509 1.21047 1.19619 1.21049 0.93987 0.89411 1.50828 0.91656 1.20171 0.88682 0.83426 0.95381 1.87787 1.35801 1.13124 1.95234 1.22269 0.94436 0.85248 0.99581 1.22040 0.96042 0.98146 0.90215 1.60548 1.25931 1.08640 1.35416 1.20562 0.89291 0.92806 0.95843 0.91611 1.22108 0.97238 0.95145 0.84008 1.86626 1.83141 1.39591 1.26195 1.19594 0.93639 0.97483 0.94987 1.21074 0.92054 1.01454 1.00129 1.20870 0.99423 0.97922 0.93438 1.21128 0.94879 1.02626 0.98966 1.17786 0.93751 0.97592 0.83552 1.91502 1.94108 1.80310 1.46011 1.21126 1.00116 0.97877 0.93338 0.92662 0.97841 0.97578 0.94143 0.93439 0.90757 0.94663 0.81867 0.93363 0.93968 0.78388 0.85726 0.85285 0.85133 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.28 55.43 0.74 -26.45 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.31 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.48 5.69 36.01 0.20 5.69 16 10 O -0.40 -9.57 9.85 -35.23 -0.35 -9.92 16 11 C 0.06 1.16 6.28 37.16 0.23 1.40 16 12 C 0.06 0.94 5.90 -3.82 -0.02 0.92 16 13 N -0.67 -9.93 5.64 -107.95 -0.61 -10.53 16 14 C 0.13 1.47 2.65 -68.87 -0.18 1.28 16 15 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 16 C 0.09 0.93 6.79 37.15 0.25 1.18 16 17 O -0.55 -6.09 12.06 -35.23 -0.43 -6.52 16 18 C -0.06 -0.70 4.59 -104.64 -0.48 -1.18 16 19 C -0.13 -1.34 9.67 -39.57 -0.38 -1.72 16 20 C -0.10 -0.97 10.04 -39.59 -0.40 -1.37 16 21 C -0.16 -1.78 10.03 -39.52 -0.40 -2.17 16 22 C 0.09 1.27 7.30 -39.42 -0.29 0.98 16 23 F -0.14 -2.10 17.27 2.25 0.04 -2.06 16 24 C -0.11 -1.49 7.98 -39.51 -0.32 -1.80 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.90 7.36 -51.93 -0.38 0.51 16 31 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.36 6.19 7.54 -39.29 -0.30 5.89 16 33 H 0.05 0.44 7.35 -51.93 -0.38 0.06 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.37 2.46 9.12 45.56 0.42 2.87 16 36 H 0.12 1.00 8.04 -52.48 -0.42 0.58 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.15 2.34 7.48 -52.49 -0.39 1.95 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -33.13 336.33 -7.53 -40.66 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.78 Total: 3.51 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.20 Total: -10.87 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.13 Total: -36.99 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.77 Total: -16.44 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.13 -7.53 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549543328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.072 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds