Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48500 * 109.46813 * 240.00078 * 3 2 1 5 5 H 1.48499 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47365 * 120.00148 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47346 * 65.00065 * 12 11 10 14 14 C 1.46892 * 111.00300 * 180.02562 * 13 12 11 15 15 H 1.09008 * 109.46798 * 324.99552 * 14 13 12 16 16 C 1.52998 * 109.47704 * 84.99678 * 14 13 12 17 17 O 1.42897 * 109.47055 * 65.00057 * 16 14 13 18 18 C 1.50698 * 109.47337 * 205.00154 * 14 13 12 19 19 C 1.38268 * 119.98457 * 319.71770 * 18 14 13 20 20 C 1.38229 * 120.05411 * 179.72472 * 19 18 14 21 21 C 1.38221 * 120.01902 * 0.55332 * 20 19 18 22 22 C 1.38440 * 119.97761 * 359.72571 * 21 20 19 23 23 F 1.35094 * 120.02266 * 180.02562 * 22 21 20 24 24 C 1.38177 * 119.99432 * 139.99736 * 18 14 13 25 25 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47126 * 60.00138 * 9 7 2 27 27 H 1.09002 * 109.47402 * 300.00369 * 9 7 2 28 28 H 1.08993 * 109.47732 * 60.00254 * 11 10 9 29 29 H 1.09000 * 109.47141 * 299.99893 * 11 10 9 30 30 H 1.09004 * 109.46579 * 184.99441 * 12 11 10 31 31 H 1.08992 * 109.47046 * 304.99625 * 12 11 10 32 32 H 1.00908 * 110.99715 * 303.95394 * 13 12 11 33 33 H 1.08996 * 109.47532 * 185.00159 * 16 14 13 34 34 H 1.09007 * 109.46687 * 305.00192 * 16 14 13 35 35 H 0.96702 * 114.00168 * 180.02562 * 17 16 14 36 36 H 1.08003 * 119.97661 * 359.97438 * 19 18 14 37 37 H 1.07997 * 119.99076 * 180.27550 * 20 19 18 38 38 H 1.08003 * 120.00770 * 179.70002 * 21 20 19 39 39 H 1.08006 * 120.00577 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6483 -5.9561 0.0023 13 7 3.4084 -5.8873 1.2574 14 6 4.4600 -6.9123 1.2930 15 1 4.1075 -7.8120 0.7884 16 6 5.7095 -6.3862 0.5840 17 8 6.2387 -5.2764 1.3123 18 6 4.7952 -7.2386 2.7256 19 6 4.8675 -6.2275 3.6659 20 6 5.1693 -6.5259 4.9814 21 6 5.4103 -7.8344 5.3560 22 6 5.3438 -8.8469 4.4142 23 9 5.5787 -10.1262 4.7794 24 6 5.0358 -8.5474 3.0978 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5575 -0.8881 27 1 0.6248 -2.5563 0.8919 28 1 0.9448 -4.9827 -0.8877 29 1 0.9455 -4.9823 0.8922 30 1 2.1823 -6.9375 -0.0868 31 1 3.3218 -5.7958 -0.8396 32 1 3.7970 -4.9662 1.3948 33 1 6.4580 -7.1769 0.5321 34 1 5.4475 -6.0671 -0.4248 35 1 7.0337 -4.8911 0.9191 36 1 4.6842 -5.2042 3.3731 37 1 5.2211 -5.7358 5.7159 38 1 5.6508 -8.0667 6.3829 39 1 4.9840 -9.3364 2.3621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549543335.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = -121.331671 kcal Electronic energy + Delta-G solvation = -21769.561724 eV Core-core repulsion = 18205.454211 eV Total energy + Delta-G solvation = -3564.107513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.93665 -39.61489 -37.57571 -36.72014 -35.01896 -32.78771 -31.85796 -30.50535 -29.00617 -27.37265 -26.27336 -23.62241 -22.80954 -22.34405 -21.39525 -20.61383 -17.77035 -17.26264 -16.42951 -16.22358 -16.15296 -15.83994 -15.66740 -15.45169 -15.15106 -14.76654 -14.40213 -14.16002 -13.78519 -13.52156 -13.16057 -12.92422 -12.51230 -12.40552 -12.04674 -11.91393 -11.65141 -11.43847 -11.24787 -11.04620 -10.82935 -10.76443 -10.55511 -10.11901 -10.01535 -9.12369 -9.02285 -8.82800 -8.61142 -8.26475 -8.17499 -6.10960 -4.12892 1.17299 1.21933 3.31534 3.34475 3.37991 3.56226 3.96837 4.20213 4.34316 4.47143 4.59583 4.75998 4.90670 4.96869 4.99603 5.22775 5.25412 5.26830 5.31829 5.38976 5.41487 5.49434 5.69551 5.81700 6.04237 6.05754 6.10337 6.17242 6.31286 6.39459 6.55460 6.90295 7.10459 7.15488 7.43545 7.51960 7.63854 7.78430 8.15048 8.56996 8.99810 9.51901 11.00521 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022861 B = 0.003283 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.498055 B = 8525.730944 C = 8828.174173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.398 6.398 11 C 0.062 3.938 12 C 0.064 3.936 13 N -0.676 5.676 14 C 0.126 3.874 15 H 0.096 0.904 16 C 0.049 3.951 17 O -0.561 6.561 18 C -0.032 4.032 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.159 4.159 22 C 0.087 3.913 23 F -0.146 7.146 24 C -0.155 4.155 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.006 0.994 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.367 0.633 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.380 0.620 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.606 -16.855 4.698 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.124 3.876 10 O -0.318 6.318 11 C -0.016 4.016 12 C -0.065 4.065 13 N -0.309 5.309 14 C 0.015 3.985 15 H 0.114 0.886 16 C -0.030 4.030 17 O -0.366 6.366 18 C -0.033 4.033 19 C -0.098 4.098 20 C -0.115 4.115 21 C -0.178 4.178 22 C 0.068 3.932 23 F -0.125 7.125 24 C -0.174 4.174 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.189 0.811 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.227 0.773 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.669 -17.238 5.435 20.988 hybrid contribution 1.151 1.018 -0.984 1.825 sum 11.820 -16.220 4.451 20.557 Atomic orbital electron populations 1.69955 1.06106 1.27262 1.50450 1.24947 0.94966 0.99412 0.95159 0.86401 0.79316 0.81970 0.78807 1.20093 1.21175 1.19962 1.21008 0.93960 0.89405 1.50944 0.91664 1.20164 0.88676 0.83435 0.95356 1.87793 1.35735 1.13080 1.95232 1.22282 0.94441 0.85276 0.99618 1.22024 0.95764 0.98226 0.90445 1.60537 1.25616 1.09551 1.35236 1.20591 0.89601 0.96406 0.91916 0.88616 1.22834 0.96130 0.89272 0.94812 1.86486 1.47839 1.48382 1.53889 1.19453 0.96662 0.91829 0.95376 1.21109 0.96499 1.00283 0.91927 1.21067 0.98292 0.95481 0.96671 1.21095 1.04490 0.92815 0.99408 1.17575 1.03376 0.78599 0.93683 1.91468 1.92324 1.36381 1.92334 1.20910 1.04428 0.97324 0.94722 0.92596 0.97886 0.97617 0.94094 0.93469 0.90621 0.94735 0.81061 0.93514 0.92965 0.77285 0.84622 0.85155 0.85277 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -15.04 9.43 -34.45 -0.32 -15.37 16 8 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.20 5.40 5.69 36.00 0.20 5.60 16 10 O -0.40 -9.34 9.85 -35.23 -0.35 -9.69 16 11 C 0.06 1.13 6.28 37.16 0.23 1.36 16 12 C 0.06 0.92 5.90 -3.82 -0.02 0.90 16 13 N -0.68 -9.71 5.71 -107.96 -0.62 -10.33 16 14 C 0.13 1.45 2.65 -68.87 -0.18 1.26 16 15 H 0.10 0.95 7.66 -51.92 -0.40 0.55 16 16 C 0.05 0.51 6.71 37.16 0.25 0.76 16 17 O -0.56 -6.31 11.43 -35.23 -0.40 -6.71 16 18 C -0.03 -0.39 4.83 -104.63 -0.51 -0.90 16 19 C -0.08 -1.01 8.31 -39.57 -0.33 -1.34 16 20 C -0.10 -1.09 10.04 -39.59 -0.40 -1.49 16 21 C -0.16 -1.75 10.03 -39.51 -0.40 -2.14 16 22 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 23 F -0.15 -1.78 17.27 2.25 0.04 -1.74 16 24 C -0.15 -1.75 9.65 -39.52 -0.38 -2.13 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.00 0.09 8.14 -51.92 -0.42 -0.33 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 31 H 0.03 0.49 7.36 -51.93 -0.38 0.10 16 32 H 0.37 6.10 6.85 -39.29 -0.27 5.83 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.54 7.35 -51.93 -0.38 0.16 16 35 H 0.38 2.81 9.12 45.56 0.42 3.22 16 36 H 0.14 1.87 6.99 -52.48 -0.37 1.51 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 1.21 8.04 -52.48 -0.42 0.79 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -32.10 335.06 -7.53 -39.63 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.73 Total: 4.46 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.24 Total: -11.22 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.12 Total: -36.47 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.75 Total: -16.40 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.10 -7.53 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549543335.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.701 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds