Wall clock time and date at job start Tue Mar 31 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99633 * 2 1 4 4 H 1.48500 * 109.46912 * 239.99694 * 3 2 1 5 5 H 1.48492 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46668 * 120.00442 * 3 2 1 7 7 C 1.37873 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99595 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00534 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46622 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.47152 * 60.00028 * 13 12 11 15 15 O 1.42902 * 109.47100 * 299.99975 * 13 12 11 16 16 C 1.53004 * 109.46689 * 180.02562 * 13 12 11 17 17 O 1.42905 * 109.46988 * 185.00069 * 16 13 12 18 18 C 1.35946 * 116.99968 * 179.97438 * 17 16 13 19 19 C 1.38661 * 120.06523 * 0.02562 * 18 17 16 20 20 C 1.38184 * 119.96857 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.09787 * 0.02562 * 20 19 18 22 22 C 1.38256 * 120.12601 * 0.02562 * 21 20 19 23 23 C 1.38332 * 120.02944 * 359.69574 * 22 21 20 24 24 F 1.35102 * 120.05153 * 180.27677 * 23 22 21 25 25 H 0.97001 * 120.00114 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 27 27 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 28 28 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 29 29 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 30 30 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 31 31 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 32 32 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 33 33 H 0.96703 * 114.00039 * 299.99952 * 15 13 12 34 34 H 1.09000 * 109.46945 * 304.99439 * 16 13 12 35 35 H 1.08998 * 109.47126 * 65.00106 * 16 13 12 36 36 H 1.08002 * 120.01339 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.94968 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.94102 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.98932 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5108 -4.9343 -0.0033 12 6 2.4353 -6.0759 -0.0049 13 6 1.6352 -7.3800 -0.0047 14 1 1.0063 -7.4206 -0.8940 15 8 0.8132 -7.4344 1.1629 16 6 2.5981 -8.5691 -0.0058 17 8 1.8548 -9.7839 -0.1231 18 6 2.5651 -10.9429 -0.1400 19 6 3.9481 -10.9115 -0.0452 20 6 4.6681 -12.0908 -0.0620 21 6 4.0116 -13.3024 -0.1739 22 6 2.6329 -13.3383 -0.2698 23 6 1.9065 -12.1612 -0.2476 24 9 0.5588 -12.1961 -0.3356 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5564 -0.8918 27 1 0.6241 -2.5574 0.8881 28 1 2.8720 -3.6051 0.8873 29 1 2.8719 -3.6035 -0.8927 30 1 0.8741 -4.9839 -0.7844 31 1 3.0626 -6.0342 -0.8952 32 1 3.0640 -6.0356 0.8847 33 1 1.3072 -7.4027 1.9936 34 1 3.2842 -8.4802 -0.8481 35 1 3.1649 -8.5784 0.9252 36 1 4.4623 -9.9657 0.0418 37 1 5.7454 -12.0660 0.0114 38 1 4.5769 -14.2225 -0.1872 39 1 2.1222 -14.2861 -0.3566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566733628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:40 Heat of formation + Delta-G solvation = -115.306001 kcal Electronic energy + Delta-G solvation = -20994.544750 eV Core-core repulsion = 17430.698529 eV Total energy + Delta-G solvation = -3563.846220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.00085 -40.40888 -38.38548 -37.15904 -35.28182 -32.94100 -31.29293 -31.06230 -30.10951 -28.71063 -25.69904 -23.77674 -22.95420 -22.48045 -21.64972 -20.48102 -18.74585 -17.57932 -17.07174 -16.92459 -16.36925 -16.19407 -15.81794 -15.33624 -15.12748 -14.74889 -14.73324 -14.46240 -14.19450 -13.65193 -13.41338 -13.10542 -12.71013 -12.54096 -12.19580 -12.08883 -12.04300 -11.64196 -11.38912 -11.09154 -10.95623 -10.88816 -10.61358 -10.16969 -9.98625 -9.38548 -9.35581 -9.17806 -8.55636 -8.36337 -7.88673 -6.00425 -4.03733 0.71951 0.86945 2.64028 3.18239 3.32268 3.36960 3.38853 3.87569 4.20310 4.30563 4.38872 4.43210 4.52288 4.67391 4.73372 4.81880 4.90606 4.93917 5.10347 5.17677 5.27058 5.35123 5.56076 5.61628 5.64987 5.77250 5.91252 5.96766 6.25064 6.26219 6.31877 6.92260 6.95370 7.38709 7.66540 7.70133 7.79807 7.90630 8.06375 8.40982 9.03284 9.59972 11.10859 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.046015 B = 0.002266 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.349093 B =12354.014742 C =12831.847108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.680 5.680 12 C 0.031 3.969 13 C 0.114 3.886 14 H 0.107 0.893 15 O -0.536 6.536 16 C 0.027 3.973 17 O -0.294 6.294 18 C 0.101 3.899 19 C -0.186 4.186 20 C -0.089 4.089 21 C -0.134 4.134 22 C -0.117 4.117 23 C 0.067 3.933 24 F -0.131 7.131 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.015 0.985 30 H 0.339 0.661 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.372 0.628 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 -27.147 -0.526 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.311 5.311 12 C -0.099 4.099 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.339 6.339 16 C -0.050 4.050 17 O -0.207 6.207 18 C 0.054 3.946 19 C -0.205 4.205 20 C -0.108 4.108 21 C -0.152 4.152 22 C -0.136 4.136 23 C 0.047 3.953 24 F -0.109 7.109 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.157 0.843 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.219 0.781 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.975 -27.005 -0.301 28.459 hybrid contribution 1.366 1.078 -0.581 1.835 sum 10.341 -25.927 -0.882 27.927 Atomic orbital electron populations 1.69966 1.06025 1.26760 1.50333 1.25014 0.94865 0.99244 0.95279 0.86632 0.79544 0.83092 0.78553 1.20310 1.21242 1.20229 1.21118 0.92890 0.91014 1.51256 0.92846 1.19063 0.93996 0.90283 0.97886 1.22194 0.97029 0.88370 0.98572 1.60467 1.19056 1.01423 1.50200 1.22496 0.95074 0.91245 1.01115 1.21917 0.91950 0.89704 0.91033 0.87566 1.86681 1.35941 1.96260 1.15063 1.23753 0.95755 0.83333 1.02109 1.86238 1.34980 1.11973 1.87520 1.19124 0.90957 0.86041 0.98464 1.21228 0.91833 1.00365 1.07031 1.21040 1.00322 0.91631 0.97776 1.20931 0.93314 0.98509 1.02435 1.21052 0.94754 0.96643 1.01148 1.17048 0.77584 0.91830 1.08816 1.91525 1.28394 1.97124 1.93902 0.92876 0.96756 0.95503 0.92351 0.96666 0.84280 0.94772 0.90797 0.78119 0.90904 0.91267 0.84458 0.85027 0.84866 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.66 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.37 5.62 -3.82 -0.02 1.35 16 11 N -0.68 -11.86 6.37 -113.77 -0.72 -12.58 16 12 C 0.03 0.40 5.35 -3.82 -0.02 0.38 16 13 C 0.11 1.36 3.46 -26.72 -0.09 1.26 16 14 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 15 O -0.54 -7.43 13.17 -40.10 -0.53 -7.96 16 16 C 0.03 0.25 4.37 37.16 0.16 0.42 16 17 O -0.29 -3.63 9.97 -24.43 -0.24 -3.87 16 18 C 0.10 1.10 6.69 -39.17 -0.26 0.84 16 19 C -0.19 -1.52 9.04 -39.44 -0.36 -1.88 16 20 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 21 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 22 C -0.12 -0.93 10.02 -39.54 -0.40 -1.33 16 23 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 24 F -0.13 -1.70 17.11 2.25 0.04 -1.66 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.34 5.86 8.73 -39.29 -0.34 5.52 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.37 3.91 9.05 45.56 0.41 4.32 16 34 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 36 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 37 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -33.43 339.13 -8.08 -41.52 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.83 Total: 2.99 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.63 Total: -13.87 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.01 Total: -38.90 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.77 Total: -11.83 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.43 -8.08 -41.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566733628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.791 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds