Wall clock time and date at job start Tue Mar 31 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99685 * 2 1 4 4 H 1.48500 * 109.46860 * 240.00476 * 3 2 1 5 5 H 1.48494 * 109.47007 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47064 * 120.00592 * 3 2 1 7 7 C 1.37871 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47294 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.46894 * 110.99927 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47430 * 305.00363 * 13 12 11 15 15 O 1.42906 * 109.46583 * 65.00413 * 13 12 11 16 16 C 1.52997 * 109.47242 * 185.00015 * 13 12 11 17 17 O 1.42905 * 109.47264 * 175.00315 * 16 13 12 18 18 C 1.35946 * 117.00012 * 180.02562 * 17 16 13 19 19 C 1.38701 * 120.03147 * 359.72281 * 18 17 16 20 20 C 1.38155 * 119.96833 * 179.78564 * 19 18 17 21 21 C 1.38453 * 120.03099 * 0.49329 * 20 19 18 22 22 F 1.35092 * 119.97256 * 179.71811 * 21 20 19 23 23 C 1.38455 * 120.05924 * 359.74179 * 21 20 19 24 24 C 1.38159 * 120.02839 * 0.02562 * 23 21 20 25 25 H 0.96995 * 120.00380 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47006 * 60.00399 * 9 7 2 27 27 H 1.08995 * 109.47469 * 300.00290 * 9 7 2 28 28 H 1.09002 * 109.46883 * 60.00183 * 10 9 7 29 29 H 1.09000 * 109.46666 * 300.00104 * 10 9 7 30 30 H 1.00900 * 110.99859 * 303.95292 * 11 10 9 31 31 H 1.09005 * 109.47417 * 60.00109 * 12 11 10 32 32 H 1.09000 * 109.47614 * 300.00343 * 12 11 10 33 33 H 0.96697 * 113.99941 * 60.00263 * 15 13 12 34 34 H 1.09001 * 109.47289 * 55.00149 * 16 13 12 35 35 H 1.09004 * 109.47261 * 295.00405 * 16 13 12 36 36 H 1.08004 * 120.01851 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.98487 * 180.20796 * 20 19 18 38 38 H 1.08000 * 119.98712 * 180.02562 * 23 21 20 39 39 H 1.08002 * 120.00969 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9343 -0.0012 12 6 2.4354 -6.0758 -0.0018 13 6 1.6354 -7.3800 -0.0018 14 1 0.9433 -7.3817 0.8402 15 8 0.9006 -7.4880 -1.2227 16 6 2.5937 -8.5661 0.1233 17 8 1.8418 -9.7757 0.2404 18 6 2.5471 -10.9316 0.3614 19 6 3.9338 -10.9019 0.3615 20 6 4.6492 -12.0769 0.4890 21 6 3.9827 -13.2847 0.6064 22 9 4.6835 -14.4335 0.7254 23 6 2.5985 -13.3163 0.6016 24 6 1.8805 -12.1423 0.4790 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6042 -0.8905 30 1 0.8743 -4.9846 0.7800 31 1 3.0635 -6.0353 0.8882 32 1 3.0634 -6.0344 -0.8917 33 1 1.4540 -7.4927 -2.0157 34 1 3.2165 -8.4383 1.0087 35 1 3.2272 -8.6164 -0.7623 36 1 4.4540 -9.9603 0.2658 37 1 5.7290 -12.0537 0.4925 38 1 2.0798 -14.2591 0.6937 39 1 0.8008 -12.1673 0.4749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574445955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:43 Heat of formation + Delta-G solvation = -117.231909 kcal Electronic energy + Delta-G solvation = -20720.929475 eV Core-core repulsion = 17156.999742 eV Total energy + Delta-G solvation = -3563.929734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.15670 -40.51734 -38.34188 -37.03254 -35.31675 -32.96124 -31.76326 -31.06542 -29.82024 -28.63803 -25.67289 -23.85282 -23.17218 -22.30669 -21.71949 -20.50053 -18.68139 -17.77727 -17.26296 -16.87209 -16.36794 -16.15511 -15.87252 -15.29991 -15.15447 -14.78709 -14.54822 -14.30099 -14.11389 -13.85008 -13.55602 -13.28264 -12.81280 -12.72077 -12.49722 -12.10092 -12.08897 -11.42672 -11.20724 -11.09914 -10.96562 -10.89637 -10.62476 -10.20007 -10.00529 -9.61854 -9.39891 -9.18946 -8.47661 -8.37449 -7.90601 -6.01546 -4.04844 0.73104 0.82346 2.69776 3.16564 3.31565 3.36295 3.38182 3.92496 4.18488 4.26074 4.33384 4.39275 4.46898 4.64825 4.69070 4.80724 4.92488 4.95715 5.08940 5.23288 5.24079 5.34079 5.45200 5.59404 5.69847 5.74063 5.81827 5.90122 6.24059 6.28666 6.30763 6.90925 6.97912 7.36839 7.62479 7.68230 7.77753 7.88836 8.04913 8.39785 9.02134 9.58951 11.09726 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.052577 B = 0.002083 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.426699 B =13436.608160 C =13830.997845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.681 5.681 12 C 0.031 3.969 13 C 0.115 3.885 14 H 0.107 0.893 15 O -0.537 6.537 16 C 0.026 3.974 17 O -0.298 6.298 18 C 0.125 3.875 19 C -0.184 4.184 20 C -0.112 4.112 21 C 0.053 3.947 22 F -0.143 7.143 23 C -0.112 4.112 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.058 0.942 30 H 0.339 0.661 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.372 0.628 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -26.019 1.210 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.312 5.312 12 C -0.099 4.099 13 C 0.054 3.946 14 H 0.125 0.875 15 O -0.341 6.341 16 C -0.050 4.050 17 O -0.211 6.211 18 C 0.079 3.921 19 C -0.203 4.203 20 C -0.130 4.130 21 C 0.034 3.966 22 F -0.122 7.122 23 C -0.131 4.131 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.219 0.781 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.890 -25.903 0.933 26.819 hybrid contribution 1.798 0.865 0.640 2.095 sum 8.688 -25.038 1.573 26.549 Atomic orbital electron populations 1.69959 1.06024 1.26771 1.50330 1.25011 0.94864 0.99244 0.95266 0.86635 0.79549 0.83088 0.78562 1.20220 1.21238 1.20313 1.21117 0.92898 0.91011 1.51268 0.92840 1.19064 0.93995 0.90292 0.97876 1.22196 0.97037 0.88356 0.98595 1.60468 1.19141 1.01484 1.50136 1.22506 0.95068 0.91232 1.01124 1.21917 0.93335 0.89713 0.89588 0.87488 1.86677 1.36619 1.96090 1.14740 1.23733 0.95585 0.83643 1.02089 1.86194 1.35060 1.12700 1.87153 1.19113 0.90255 0.86935 0.95760 1.21167 0.92908 0.99285 1.06923 1.20949 1.00889 0.90763 1.00446 1.17580 0.89874 0.81977 1.07159 1.91488 1.78984 1.47807 1.93883 1.20978 0.92029 0.99286 1.00827 1.20333 1.01024 0.88902 1.04025 0.92873 0.95502 0.96757 0.96648 0.92335 0.84329 0.94822 0.90732 0.78140 0.90951 0.91352 0.84430 0.84482 0.84046 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 11 N -0.68 -11.59 6.45 -113.78 -0.73 -12.32 16 12 C 0.03 0.38 5.32 -3.83 -0.02 0.36 16 13 C 0.11 1.26 3.43 -26.73 -0.09 1.17 16 14 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 15 O -0.54 -6.90 13.25 -40.07 -0.53 -7.43 16 16 C 0.03 0.22 4.37 37.16 0.16 0.38 16 17 O -0.30 -3.15 10.10 -24.41 -0.25 -3.39 16 18 C 0.13 1.18 6.69 -39.24 -0.26 0.92 16 19 C -0.18 -1.49 9.04 -39.44 -0.36 -1.85 16 20 C -0.11 -0.89 10.02 -39.53 -0.40 -1.28 16 21 C 0.05 0.47 7.30 -39.42 -0.29 0.18 16 22 F -0.14 -1.36 17.26 2.25 0.04 -1.33 16 23 C -0.11 -0.88 10.02 -39.53 -0.40 -1.28 16 24 C -0.12 -1.05 9.98 -39.44 -0.39 -1.45 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.34 5.66 8.73 -39.29 -0.34 5.31 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.37 3.52 9.04 45.56 0.41 3.93 16 34 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 35 H 0.07 0.48 7.65 -51.93 -0.40 0.09 16 36 H 0.14 0.88 6.30 -52.48 -0.33 0.54 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -32.40 339.42 -8.09 -40.49 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.83 Total: 3.00 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.62 Total: -14.53 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.00 Total: -38.43 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.78 Total: -10.82 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.40 -8.09 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.746 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds