Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47108 * 270.00055 * 3 2 1 5 5 H 1.48496 * 109.47228 * 29.99892 * 3 2 1 6 6 H 1.48501 * 109.47142 * 150.00405 * 3 2 1 7 7 C 1.37877 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00185 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46777 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.46905 * 111.00045 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47068 * 179.97438 * 12 11 10 14 14 H 1.09009 * 109.47040 * 60.00210 * 13 12 11 15 15 O 1.42904 * 109.47447 * 300.00554 * 13 12 11 16 16 C 1.53001 * 109.47291 * 179.97438 * 13 12 11 17 17 O 1.42902 * 109.47329 * 185.00184 * 16 13 12 18 18 C 1.35946 * 116.99599 * 180.02562 * 17 16 13 19 19 C 1.38705 * 120.02438 * 179.97438 * 18 17 16 20 20 C 1.38152 * 119.96614 * 179.69405 * 19 18 17 21 21 C 1.38454 * 120.03139 * 0.28380 * 20 19 18 22 22 F 1.35096 * 119.96942 * 179.97438 * 21 20 19 23 23 C 1.38457 * 120.06079 * 359.97015 * 21 20 19 24 24 C 1.38152 * 120.02854 * 0.02562 * 23 21 20 25 25 H 0.96997 * 120.00217 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47083 * 59.99766 * 9 7 2 27 27 H 1.09001 * 109.47149 * 299.99807 * 9 7 2 28 28 H 1.09001 * 109.47366 * 60.00109 * 10 9 7 29 29 H 1.09001 * 109.47263 * 299.99908 * 10 9 7 30 30 H 1.00904 * 111.00075 * 56.04543 * 11 10 9 31 31 H 1.09004 * 109.46339 * 60.00159 * 12 11 10 32 32 H 1.08996 * 109.47211 * 300.00359 * 12 11 10 33 33 H 0.96698 * 113.99653 * 299.99595 * 15 13 12 34 34 H 1.09005 * 109.46624 * 65.00136 * 16 13 12 35 35 H 1.08995 * 109.46914 * 305.00760 * 16 13 12 36 36 H 1.08002 * 120.02027 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.98455 * 180.29891 * 20 19 18 38 38 H 1.07999 * 119.98352 * 180.02562 * 23 21 20 39 39 H 1.07994 * 120.01250 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0172 -4.0078 -0.0015 13 6 7.5465 -3.9669 -0.0034 14 1 7.8971 -3.4427 0.8857 15 8 8.0034 -3.2818 -1.1713 16 6 8.0950 -5.3953 -0.0020 17 8 9.5188 -5.3588 0.1137 18 6 10.1675 -6.5534 0.1296 19 6 11.5497 -6.5912 0.2391 20 6 12.2072 -7.8060 0.2615 21 6 11.4875 -8.9852 0.1688 22 9 12.1318 -10.1724 0.1903 23 6 10.1082 -8.9487 0.0541 24 6 9.4482 -7.7353 0.0315 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6802 0.8888 27 1 3.8746 -0.6799 -0.8911 28 1 3.6580 -3.1505 -0.8907 29 1 3.6587 -3.1501 0.8893 30 1 5.8529 -2.1099 0.7787 31 1 5.6669 -4.5318 -0.8908 32 1 5.6684 -4.5305 0.8891 33 1 7.7280 -3.6936 -2.0018 34 1 7.8186 -5.8914 -0.9324 35 1 7.6759 -5.9445 0.8410 36 1 12.1114 -5.6715 0.3114 37 1 13.2830 -7.8359 0.3516 38 1 9.5481 -9.8693 -0.0178 39 1 8.3723 -7.7071 -0.0575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574445956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -113.983171 kcal Electronic energy + Delta-G solvation = -20778.181087 eV Core-core repulsion = 17214.392229 eV Total energy + Delta-G solvation = -3563.788858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.17534 -40.54923 -38.39386 -37.09031 -35.42576 -32.91725 -31.79629 -31.19847 -30.02262 -28.92209 -25.84956 -23.83592 -23.14084 -22.31305 -21.77009 -20.36164 -18.70930 -17.80326 -17.29672 -16.95144 -16.75566 -16.24491 -15.90381 -15.39293 -15.18366 -14.80495 -14.53920 -14.27828 -14.13581 -13.87246 -13.52267 -13.27968 -12.95509 -12.79714 -12.63363 -12.49966 -12.17038 -11.46154 -11.33300 -11.23854 -11.06199 -10.94190 -10.40058 -10.13937 -9.82257 -9.71324 -9.64255 -9.26149 -8.55802 -8.50333 -8.04089 -6.06774 -4.05638 0.70734 0.79847 2.65712 3.14089 3.32434 3.39313 3.44296 3.90261 4.13604 4.22050 4.30657 4.37985 4.44721 4.60395 4.65233 4.76031 4.85832 4.91299 5.01177 5.17541 5.20108 5.27883 5.42710 5.54312 5.67687 5.71555 5.78801 5.82246 6.09990 6.16820 6.26815 6.70674 6.93926 7.04996 7.33512 7.49566 7.58367 7.69517 7.83710 8.49600 8.96464 9.55462 11.06365 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.053324 B = 0.002179 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.962360 B =12849.589374 C =13251.863873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.683 5.683 12 C 0.030 3.970 13 C 0.115 3.885 14 H 0.106 0.894 15 O -0.537 6.537 16 C 0.026 3.974 17 O -0.299 6.299 18 C 0.125 3.875 19 C -0.124 4.124 20 C -0.113 4.113 21 C 0.054 3.946 22 F -0.143 7.143 23 C -0.111 4.111 24 C -0.184 4.184 25 H 0.263 0.737 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.338 0.662 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.392 -17.395 0.602 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.314 5.314 12 C -0.100 4.100 13 C 0.054 3.946 14 H 0.124 0.876 15 O -0.341 6.341 16 C -0.051 4.051 17 O -0.212 6.212 18 C 0.079 3.921 19 C -0.143 4.143 20 C -0.131 4.131 21 C 0.035 3.965 22 F -0.121 7.121 23 C -0.130 4.130 24 C -0.202 4.202 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 23.624 -16.652 0.376 28.905 hybrid contribution -0.305 -0.298 0.544 0.691 sum 23.319 -16.950 0.920 28.843 Atomic orbital electron populations 1.69915 1.06326 1.26979 1.51000 1.25018 0.94760 0.99291 0.94417 0.86718 0.80251 0.83308 0.78638 1.20188 1.21495 1.18955 1.21053 0.89335 0.94508 1.51230 0.91155 1.19545 0.96663 0.91689 0.96889 1.21991 0.83649 1.00327 0.99463 1.60482 1.09822 1.11015 1.50110 1.22499 0.93296 0.92832 1.01393 1.21906 0.92474 0.89283 0.90918 0.87590 1.86661 1.77470 1.54865 1.15146 1.23716 0.78793 1.00364 1.02179 1.86187 1.20909 1.26521 1.87537 1.19108 0.92203 0.84861 0.95932 1.20327 0.91322 0.98494 1.04147 1.20977 1.00849 0.90469 1.00835 1.17585 0.90628 0.81074 1.07255 1.91491 1.81788 1.44481 1.94377 1.20956 0.92576 0.99030 1.00467 1.21169 1.00795 0.91374 1.06912 0.92694 0.96796 0.95944 0.91730 0.95966 0.84419 0.90613 0.94531 0.78018 0.91293 0.90916 0.83976 0.84041 0.84448 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.40 16 11 N -0.68 -10.80 6.37 -113.78 -0.72 -11.53 16 12 C 0.03 0.35 5.35 -3.82 -0.02 0.33 16 13 C 0.11 1.18 3.45 -26.73 -0.09 1.08 16 14 H 0.11 1.15 8.14 -51.92 -0.42 0.72 16 15 O -0.54 -6.51 13.17 -40.05 -0.53 -7.04 16 16 C 0.03 0.21 4.38 37.16 0.16 0.37 16 17 O -0.30 -3.02 10.10 -24.39 -0.25 -3.27 16 18 C 0.13 1.14 6.69 -39.24 -0.26 0.88 16 19 C -0.12 -1.02 9.98 -39.44 -0.39 -1.41 16 20 C -0.11 -0.86 10.02 -39.53 -0.40 -1.25 16 21 C 0.05 0.46 7.30 -39.42 -0.29 0.18 16 22 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 23 C -0.11 -0.86 10.02 -39.53 -0.40 -1.26 16 24 C -0.18 -1.44 9.04 -39.44 -0.36 -1.80 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 27 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.34 5.18 8.73 -39.29 -0.34 4.84 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 3.35 9.05 45.56 0.41 3.77 16 34 H 0.07 0.46 7.65 -51.93 -0.40 0.07 16 35 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.84 6.30 -52.49 -0.33 0.51 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -32.78 335.71 -7.70 -40.48 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.79 Total: 2.60 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.61 Total: -15.18 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.05 Total: -38.56 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.77 Total: -10.31 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.78 -7.70 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.505 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds