Wall clock time and date at job start Tue Mar 31 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53001 * 109.46753 * 239.99959 * 2 1 3 5 5 C 1.50697 * 109.46778 * 120.00675 * 2 1 3 6 6 C 1.34095 * 126.35683 * 59.99924 * 5 2 1 7 7 N 1.34704 * 107.81024 * 179.72272 * 6 5 2 8 8 C 1.31124 * 108.60062 * 0.42267 * 7 6 5 9 9 S 1.76206 * 125.71893 * 179.84083 * 8 7 6 10 10 C 1.81000 * 99.99929 * 359.68898 * 9 8 7 11 11 C 1.52999 * 109.46638 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47317 * 300.00032 * 11 10 9 13 13 C 1.52997 * 109.47269 * 60.00376 * 11 10 9 14 14 C 1.50706 * 109.46953 * 180.02562 * 11 10 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46819 * 59.99744 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47196 * 300.00241 * 18 16 14 22 22 O 1.34263 * 108.55854 * 359.57651 * 8 7 6 23 23 H 1.09001 * 109.46865 * 300.00177 * 1 2 3 24 24 H 1.09000 * 109.46836 * 59.99477 * 1 2 3 25 25 H 1.08997 * 109.47355 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46813 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47284 * 300.00023 * 3 2 1 28 28 H 1.09000 * 109.46869 * 60.00340 * 3 2 1 29 29 H 1.08997 * 109.47726 * 300.00430 * 4 2 1 30 30 H 1.09000 * 109.46990 * 60.00658 * 4 2 1 31 31 H 1.09004 * 109.47030 * 179.97438 * 4 2 1 32 32 H 1.07996 * 126.09877 * 359.97085 * 6 5 2 33 33 H 1.09000 * 109.47216 * 300.00172 * 10 9 8 34 34 H 1.09001 * 109.46620 * 60.00275 * 10 9 8 35 35 H 1.09002 * 109.47153 * 60.00359 * 12 11 10 36 36 H 1.09001 * 109.46832 * 180.02562 * 12 11 10 37 37 H 1.08992 * 109.47303 * 299.99871 * 12 11 10 38 38 H 1.09000 * 109.47140 * 59.99453 * 13 11 10 39 39 H 1.09001 * 109.47375 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.47497 * 299.99829 * 13 11 10 41 41 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7106 1.2304 6 6 1.7881 -1.9853 1.5675 7 7 2.4208 -2.2322 2.7308 8 6 3.0349 -1.1386 3.1133 9 16 3.9969 -0.9578 4.5784 10 6 3.8321 -2.6223 5.2701 11 6 4.6090 -2.7071 6.5854 12 6 6.0866 -2.4069 6.3252 13 6 4.0477 -1.6853 7.5761 14 6 4.4723 -4.0932 7.1610 15 1 3.8899 -4.8390 6.6405 16 6 5.0908 -4.4091 8.3521 17 7 5.8004 -3.5011 8.9856 18 14 4.9207 -6.1270 9.0659 19 1 5.4659 -7.1187 8.1044 20 1 5.6749 -6.2095 10.3424 21 1 3.4867 -6.4186 9.3179 22 8 2.8126 -0.1814 2.1983 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6766 -1.7489 -1.2494 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 1.1938 -2.6897 1.0046 33 1 2.7794 -2.8363 5.4549 34 1 4.2324 -3.3502 4.5644 35 1 6.1858 -1.4045 5.9087 36 1 6.6401 -2.4678 7.2622 37 1 6.4864 -3.1349 5.6195 38 1 2.9951 -1.8991 7.7614 39 1 4.6010 -1.7460 8.5133 40 1 4.1469 -0.6829 7.1596 41 1 6.2358 -3.7234 9.8234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584422143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:28 Heat of formation + Delta-G solvation = -1.092590 kcal Electronic energy + Delta-G solvation = -20134.688169 eV Core-core repulsion = 17142.007791 eV Total energy + Delta-G solvation = -2992.680379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98081 -37.18394 -36.05383 -34.46172 -31.56782 -29.39298 -27.58417 -27.57690 -26.30174 -25.72076 -25.15398 -23.07123 -22.41415 -19.67293 -19.15655 -17.80922 -16.50216 -16.01255 -15.87013 -14.95806 -14.73380 -14.28624 -14.21725 -13.81610 -13.37386 -13.32114 -12.83278 -12.64330 -12.50160 -12.22290 -11.97439 -11.76158 -11.51890 -11.32450 -11.29217 -11.18577 -11.13857 -10.84257 -10.78854 -10.34967 -10.31961 -10.25836 -9.99617 -9.62538 -9.49050 -9.20959 -8.71936 -8.39598 -7.11750 -6.02525 -4.13602 1.30678 1.55432 2.76567 2.83740 3.24703 3.30039 3.34547 3.38431 4.39368 4.42163 4.63423 4.63459 4.95568 5.06614 5.23836 5.29925 5.32036 5.47031 5.47984 5.53302 5.57504 5.73531 5.78687 5.98311 5.99193 5.99628 6.08417 6.19931 6.34077 6.51368 6.78385 6.87612 6.99223 7.01649 7.32506 7.55103 7.69399 7.79729 7.99600 8.11545 8.35568 8.85402 9.51825 10.98760 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.037310 B = 0.003519 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.284932 B = 7953.917409 C = 8331.930575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.053 4.053 6 C -0.026 4.026 7 N -0.489 5.489 8 C 0.171 3.829 9 S 0.021 5.979 10 C -0.073 4.073 11 C 0.081 3.919 12 C -0.137 4.137 13 C -0.137 4.137 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.068 3.932 17 N -0.885 5.885 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 O -0.185 6.185 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.177 0.823 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.016 0.984 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.088 0.912 40 H 0.016 0.984 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 7.856 -16.359 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.022 3.978 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.111 4.111 6 C -0.167 4.167 7 N -0.221 5.221 8 C -0.142 4.142 9 S 0.254 5.746 10 C -0.221 4.221 11 C 0.078 3.922 12 C -0.195 4.195 13 C -0.195 4.195 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 O -0.073 6.073 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.194 0.806 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.035 0.965 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.520 8.305 -15.413 18.682 hybrid contribution -0.868 -1.512 -0.542 1.826 sum -7.388 6.793 -15.955 18.849 Atomic orbital electron populations 1.21929 0.92535 1.02684 1.02516 1.19038 0.95595 0.95095 0.88090 1.21861 1.01778 0.94130 1.02345 1.21929 1.01732 1.00478 0.95526 1.23263 0.99612 0.94769 0.93407 1.22918 1.03476 0.95223 0.95063 1.71127 1.12681 1.25508 1.12831 1.28939 1.02923 0.84195 0.98110 1.86069 1.56563 1.23068 1.08890 1.24233 1.05468 0.90393 1.01979 1.18086 0.91202 0.96315 0.86581 1.21933 0.99020 0.96184 1.02328 1.21934 0.99750 0.94881 1.02902 1.20949 1.31922 0.95352 1.06284 0.92375 1.24876 0.94827 0.97145 0.96551 1.69795 1.32705 1.33110 1.16685 0.86599 0.78242 0.84526 0.78297 1.20247 1.21260 1.20242 1.84585 1.54630 1.40139 1.27983 0.92102 0.91399 0.91947 0.92038 0.91790 0.92037 0.91945 0.91398 0.92110 0.80563 0.89836 0.89828 0.96476 0.89302 0.95118 0.95120 0.89300 0.96473 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.35 37.16 0.31 -0.82 16 2 C 0.02 0.22 0.93 -155.66 -0.15 0.08 16 3 C -0.14 -1.33 8.06 37.16 0.30 -1.04 16 4 C -0.14 -1.13 8.35 37.16 0.31 -0.82 16 5 C -0.05 -0.75 5.70 -35.77 -0.20 -0.95 16 6 C -0.03 -0.40 11.21 -17.75 -0.20 -0.60 16 7 N -0.49 -9.18 10.65 -13.90 -0.15 -9.33 16 8 C 0.17 3.20 8.43 52.46 0.44 3.64 16 9 S 0.02 0.41 19.36 -107.50 -2.08 -1.67 16 10 C -0.07 -1.55 4.13 37.16 0.15 -1.40 16 11 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 12 C -0.14 -3.19 8.01 37.16 0.30 -2.90 16 13 C -0.14 -3.19 8.01 37.16 0.30 -2.90 16 14 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -23.72 9.35 55.43 0.52 -23.20 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 O -0.18 -3.13 10.26 3.51 0.04 -3.10 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 8.01 -51.93 -0.42 0.06 16 26 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.48 8.01 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 34 H 0.08 1.82 8.14 -51.92 -0.42 1.40 16 35 H 0.02 0.36 6.91 -51.93 -0.36 0.00 16 36 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 40 H 0.02 0.36 6.91 -51.93 -0.36 0.00 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -27.89 341.00 -7.24 -35.13 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.79 Total: -0.93 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 1.12 Total: -17.72 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.37 Total: -32.53 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.08 Total: -1.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.89 -7.24 -35.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584422143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.037 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds