Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39268 * 119.12680 * 2 1 4 4 C 1.36652 * 119.92358 * 180.02562 * 3 2 1 5 5 C 1.40587 * 118.16679 * 359.74935 * 4 3 2 6 6 C 1.41694 * 119.05557 * 0.46536 * 5 4 3 7 7 C 1.40497 * 119.20432 * 179.75090 * 6 5 4 8 8 C 1.36165 * 120.02265 * 359.74764 * 7 6 5 9 9 C 1.39143 * 121.15261 * 359.97438 * 8 7 6 10 10 C 1.37742 * 120.64918 * 359.97438 * 9 8 7 11 11 O 1.35764 * 120.30657 * 180.02562 * 10 9 8 12 12 C 1.42907 * 116.99962 * 354.90350 * 11 10 9 13 13 C 1.53001 * 109.47062 * 184.85272 * 12 11 10 14 14 C 1.50708 * 115.54768 * 275.56039 * 13 12 11 15 15 H 1.07992 * 119.99976 * 114.64913 * 14 13 12 16 16 C 1.37880 * 119.99881 * 294.64286 * 14 13 12 17 17 N 1.31518 * 120.00041 * 352.57859 * 16 14 13 18 18 Si 1.86796 * 119.99968 * 172.57446 * 16 14 13 19 19 H 1.48499 * 109.47166 * 90.00375 * 18 16 14 20 20 H 1.48499 * 109.47143 * 210.00289 * 18 16 14 21 21 H 1.48493 * 109.47059 * 330.00096 * 18 16 14 22 22 C 1.52996 * 117.50233 * 129.85039 * 13 12 11 23 23 C 1.52996 * 117.50239 * 61.22545 * 13 12 11 24 24 N 1.31109 * 119.13033 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.46979 * 270.02001 * 1 2 3 26 26 H 1.08996 * 109.47330 * 30.02289 * 1 2 3 27 27 H 1.08999 * 109.46862 * 150.02453 * 1 2 3 28 28 H 1.08000 * 120.03798 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.91976 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.98728 * 179.72479 * 7 6 5 31 31 H 1.08000 * 119.42188 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.67072 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.46698 * 64.85237 * 12 11 10 34 34 H 1.09000 * 109.47363 * 304.85202 * 12 11 10 35 35 H 0.96996 * 120.00469 * 185.00714 * 17 16 14 36 36 H 1.09005 * 117.49532 * 359.97438 * 22 13 12 37 37 H 1.08990 * 117.50137 * 145.01763 * 22 13 12 38 38 H 1.08994 * 117.50562 * 214.98260 * 23 13 12 39 39 H 1.09004 * 117.49684 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2166 0.0000 4 6 3.5513 1.2356 -0.0005 5 6 4.2321 0.0055 0.0044 6 6 3.4816 -1.1963 -0.0005 7 6 4.1588 -2.4273 -0.0009 8 6 5.5202 -2.4560 -0.0020 9 6 6.2649 -1.2807 -0.0031 10 6 5.6397 -0.0533 -0.0038 11 8 6.3732 1.0892 -0.0054 12 6 7.7911 0.9500 0.1067 13 6 8.4330 2.3351 0.2088 14 6 8.6978 3.0271 -1.1035 15 1 8.1697 3.9360 -1.3509 16 6 9.6144 2.4997 -1.9883 17 7 10.3626 1.4792 -1.6297 18 14 9.7937 3.2347 -3.6962 19 1 10.8147 4.3125 -3.6666 20 1 10.2179 2.1769 -4.6482 21 1 8.4908 3.7988 -4.1315 22 6 9.4298 2.5697 1.3455 23 6 8.0410 3.2092 1.4018 24 7 2.1452 -1.1453 0.0005 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6313 2.1439 -0.0004 29 1 4.0932 2.1697 -0.0010 30 1 3.5994 -3.3512 -0.0001 31 1 6.0308 -3.4077 -0.0019 32 1 7.3437 -1.3313 -0.0044 33 1 8.1762 0.4350 -0.7734 34 1 8.0300 0.3721 0.9995 35 1 11.0570 1.1544 -2.2240 36 1 9.6281 1.7374 2.0208 37 1 10.2776 3.2245 1.1443 38 1 7.9751 4.2847 1.2377 39 1 7.3255 2.7977 2.1137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596270209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = 32.823567 kcal Electronic energy + Delta-G solvation = -21456.165795 eV Core-core repulsion = 18329.512180 eV Total energy + Delta-G solvation = -3126.653615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77158 -38.76435 -36.71948 -35.70470 -32.96050 -32.12501 -31.78820 -29.15761 -27.84691 -26.60735 -25.32115 -23.62181 -22.33582 -21.54342 -21.11043 -19.42273 -18.06615 -17.32080 -16.52821 -16.05000 -15.69088 -15.23877 -14.65832 -14.47720 -14.36421 -14.31885 -13.71430 -13.18658 -13.14266 -12.91948 -12.69092 -12.32395 -12.17671 -11.70288 -11.62999 -11.25903 -11.12348 -10.99024 -10.77463 -10.59004 -10.52601 -10.33404 -9.79443 -9.64076 -9.38908 -8.98596 -8.64850 -8.52499 -8.30079 -7.43036 -6.16828 -4.21337 0.68838 0.97796 2.26770 3.10918 3.22713 3.30692 3.35054 3.65211 4.27326 4.29644 4.31475 4.76517 4.94991 5.00585 5.05168 5.11645 5.26461 5.35330 5.46725 5.49336 5.52926 5.56330 5.81964 5.87567 5.93082 6.08595 6.13141 6.15473 6.23262 6.24497 6.44461 6.55116 6.61638 6.65474 6.68984 6.72352 6.91929 7.01231 7.25525 7.31959 7.77858 7.97688 8.07890 8.27880 8.78332 9.43349 10.91510 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.004470 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.781019 B = 6262.573890 C = 6412.991586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.163 3.837 3 C -0.201 4.201 4 C -0.019 4.019 5 C -0.135 4.135 6 C 0.168 3.832 7 C -0.162 4.162 8 C -0.045 4.045 9 C -0.242 4.242 10 C 0.181 3.819 11 O -0.296 6.296 12 C 0.103 3.897 13 C 0.045 3.955 14 C -0.491 4.491 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.883 5.883 18 Si 0.892 3.108 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.163 4.163 23 C -0.198 4.198 24 N -0.489 5.489 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -4.281 4.019 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.011 3.989 3 C -0.221 4.221 4 C -0.045 4.045 5 C -0.138 4.138 6 C 0.047 3.953 7 C -0.181 4.181 8 C -0.065 4.065 9 C -0.261 4.261 10 C 0.131 3.869 11 O -0.207 6.207 12 C 0.029 3.971 13 C 0.044 3.956 14 C -0.529 4.529 15 H 0.081 0.919 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.719 3.281 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.200 4.200 23 C -0.235 4.235 24 N -0.199 5.199 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.212 -5.074 3.902 14.681 hybrid contribution 1.071 0.941 -0.904 1.688 sum -12.141 -4.133 2.998 13.171 Atomic orbital electron populations 1.20753 0.88969 1.03418 1.03037 1.21450 0.96893 0.88487 0.92117 1.21589 0.94899 0.99002 1.06590 1.21519 0.94189 0.97979 0.90789 1.18303 0.91524 0.94988 1.08940 1.18595 0.88689 0.92242 0.95817 1.20432 0.93853 0.95985 1.07858 1.20596 0.93400 0.97845 0.94636 1.21248 1.01221 0.91702 1.11955 1.19108 0.90001 0.86844 0.90935 1.86095 1.22130 1.27578 1.84896 1.22762 0.74212 0.99832 1.00269 1.18737 0.96597 0.90366 0.89886 1.20465 1.23532 1.09417 0.99441 0.91881 1.24994 0.95351 0.94621 0.98366 1.69938 1.19775 1.25199 1.37061 0.86576 0.78595 0.78831 0.84066 1.20522 1.21032 1.19637 1.22759 0.92643 1.01878 1.02749 1.22822 0.98248 0.98884 1.03590 1.67944 1.08084 1.28488 1.15416 0.90340 0.90632 0.90512 0.84790 0.83597 0.85302 0.85553 0.84709 0.90048 0.94522 0.92723 0.91657 0.89609 0.90184 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.14 36.01 0.37 -0.59 16 2 C 0.16 2.20 6.78 -82.52 -0.56 1.64 16 3 C -0.20 -2.66 9.64 -39.77 -0.38 -3.04 16 4 C -0.02 -0.30 9.66 -39.27 -0.38 -0.68 16 5 C -0.14 -2.40 5.75 -106.69 -0.61 -3.01 16 6 C 0.17 2.84 6.60 -84.87 -0.56 2.28 16 7 C -0.16 -2.46 9.96 -39.48 -0.39 -2.86 16 8 C -0.04 -0.66 9.93 -39.99 -0.40 -1.06 16 9 C -0.24 -4.18 9.03 -39.43 -0.36 -4.54 16 10 C 0.18 3.43 6.69 -38.76 -0.26 3.17 16 11 O -0.30 -6.27 9.33 -19.00 -0.18 -6.45 16 12 C 0.10 2.30 4.57 37.16 0.17 2.47 16 13 C 0.04 1.07 1.55 -155.66 -0.24 0.83 16 14 C -0.49 -13.03 8.82 -34.44 -0.30 -13.34 16 15 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 16 C 0.07 1.85 5.23 -17.82 -0.09 1.76 16 17 N -0.88 -23.90 12.59 55.43 0.70 -23.20 16 18 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.16 -3.60 9.88 -26.73 -0.26 -3.87 16 23 C -0.20 -4.19 9.88 -26.73 -0.26 -4.46 16 24 N -0.49 -7.79 10.24 -7.24 -0.07 -7.87 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 2.26 7.68 -52.49 -0.40 1.86 16 30 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 2.31 6.29 -52.49 -0.33 1.98 16 33 H 0.08 1.98 6.84 -51.93 -0.36 1.63 16 34 H 0.04 0.76 7.38 -51.93 -0.38 0.38 16 35 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.06 1.34 8.06 -51.93 -0.42 0.93 16 37 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -28.82 332.48 -9.34 -38.15 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.24 Total: 4.01 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -4.53 Total: -25.29 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.62 Total: -31.07 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.18 Total: -6.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.82 -9.34 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.978 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds