Wall clock time and date at job start Tue Mar 31 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38970 * 119.08365 * 2 1 4 4 C 1.38300 * 119.71679 * 180.02562 * 3 2 1 5 5 O 1.35588 * 121.03313 * 180.02562 * 4 3 2 6 6 C 1.42903 * 116.99756 * 5.30839 * 5 4 3 7 7 C 1.52997 * 109.46914 * 180.71944 * 6 5 4 8 8 C 1.50702 * 115.54775 * 279.82791 * 7 6 5 9 9 H 1.08003 * 119.99719 * 144.24695 * 8 7 6 10 10 C 1.37873 * 120.00134 * 324.25018 * 8 7 6 11 11 N 1.31511 * 120.00129 * 338.07702 * 10 8 7 12 12 Si 1.86803 * 120.00220 * 158.08279 * 10 8 7 13 13 H 1.48501 * 109.47023 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47179 * 119.99449 * 12 10 8 15 15 H 1.48496 * 109.47002 * 239.99897 * 12 10 8 16 16 C 1.52999 * 117.50099 * 134.12050 * 7 6 5 17 17 C 1.52999 * 60.00093 * 252.50705 * 16 7 6 18 18 C 1.41365 * 117.93372 * 0.27444 * 4 3 2 19 19 C 1.40243 * 121.36968 * 179.70541 * 18 4 3 20 20 C 1.36214 * 119.63077 * 180.02562 * 19 18 4 21 21 C 1.39297 * 120.82761 * 359.97438 * 20 19 18 22 22 C 1.36124 * 121.03659 * 359.43732 * 21 20 19 23 23 C 1.40570 * 119.75342 * 0.84753 * 22 21 20 24 24 N 1.31209 * 119.08490 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.46920 * 89.99527 * 1 2 3 26 26 H 1.08996 * 109.47019 * 209.99755 * 1 2 3 27 27 H 1.08996 * 109.47075 * 329.99770 * 1 2 3 28 28 H 1.07993 * 120.13735 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47111 * 300.72120 * 6 5 4 30 30 H 1.08997 * 109.47222 * 60.71954 * 6 5 4 31 31 H 0.96997 * 120.00634 * 185.29616 * 11 10 8 32 32 H 1.09005 * 117.49715 * 0.02562 * 16 7 6 33 33 H 1.08995 * 117.49890 * 145.01754 * 16 7 6 34 34 H 1.09000 * 117.50042 * 252.51053 * 17 16 7 35 35 H 1.09005 * 117.51442 * 107.47617 * 17 16 7 36 36 H 1.08004 * 120.18272 * 0.04117 * 19 18 4 37 37 H 1.07997 * 119.59216 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.48383 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.11697 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1826 1.2145 0.0000 4 6 3.5655 1.2298 -0.0005 5 8 4.2516 2.3992 0.0000 6 6 3.4864 3.6002 0.1189 7 6 4.4245 4.8083 0.0827 8 6 5.1267 5.1248 1.3780 9 1 6.1392 5.5005 1.3656 10 6 4.4766 4.9349 2.5789 11 7 3.1625 4.9023 2.6173 12 14 5.4624 4.7240 4.1516 13 1 6.9126 4.7990 3.8406 14 1 5.1046 5.8019 5.1084 15 1 5.1539 3.4031 4.7558 16 6 4.0279 5.9843 -0.8121 17 6 5.1874 5.0718 -1.2171 18 6 4.2415 -0.0118 -0.0071 19 6 5.6422 -0.0803 -0.0142 20 6 6.2569 -1.2958 -0.0209 21 6 5.5117 -2.4727 -0.0202 22 6 4.1509 -2.4417 -0.0014 23 6 3.4812 -1.2058 -0.0003 24 7 2.1449 -1.1466 -0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6299 2.1423 0.0004 29 1 2.7796 3.6641 -0.7085 30 1 2.9411 3.5917 1.0626 31 1 2.7034 4.8459 3.4699 32 1 3.0984 5.8974 -1.3748 33 1 4.2747 6.9872 -0.4639 34 1 6.1970 5.4745 -1.1354 35 1 5.0211 4.3842 -2.0464 36 1 6.2302 0.8256 -0.0141 37 1 7.3356 -1.3479 -0.0268 38 1 6.0216 -3.4247 -0.0251 39 1 3.5879 -3.3633 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596280607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:26 Heat of formation + Delta-G solvation = 21.756991 kcal Electronic energy + Delta-G solvation = -21815.552994 eV Core-core repulsion = 18688.419496 eV Total energy + Delta-G solvation = -3127.133498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02829 -39.96080 -38.21407 -37.79975 -34.33233 -33.38747 -32.90595 -30.70323 -28.81253 -28.43876 -27.46570 -24.49438 -23.52939 -23.12526 -22.59750 -21.22373 -19.11627 -18.89400 -18.50254 -17.79275 -17.08287 -16.46299 -16.18958 -15.94224 -15.58636 -15.25315 -15.18709 -14.89979 -14.51345 -14.30000 -13.91184 -13.78677 -13.49826 -13.11530 -13.00754 -12.85161 -12.48302 -12.41930 -12.29257 -12.22210 -12.17267 -12.08546 -11.44487 -11.20435 -10.71554 -10.59615 -10.55679 -10.09308 -9.71067 -8.89991 -8.25775 -6.24092 -0.48704 -0.19141 1.01942 1.31538 1.38587 1.47707 1.96386 2.07246 2.32841 2.87924 3.09869 3.27668 3.55876 3.68066 3.70352 3.83162 4.05748 4.10827 4.24609 4.30607 4.41827 4.44968 4.48468 4.53755 4.65602 4.76441 4.77572 4.86650 4.90052 4.94609 5.04793 5.09897 5.12745 5.19853 5.37806 5.42519 5.46796 5.49720 5.56650 5.77168 5.94154 6.27907 6.37468 6.69358 6.97483 7.32693 8.77593 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014557 B = 0.005755 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.004376 B = 4863.794753 C = 5238.040255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.187 3.813 3 C -0.299 4.299 4 C 0.181 3.819 5 O -0.305 6.305 6 C 0.096 3.904 7 C 0.011 3.989 8 C -0.509 4.509 9 H 0.055 0.945 10 C 0.034 3.966 11 N -0.895 5.895 12 Si 0.940 3.060 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.285 1.285 16 C -0.181 4.181 17 C -0.183 4.183 18 C -0.157 4.157 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.075 4.075 22 C -0.120 4.120 23 C 0.141 3.859 24 N -0.526 5.526 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.140 0.860 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.267 0.733 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 -12.350 -5.499 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.037 3.963 3 C -0.320 4.320 4 C 0.126 3.874 5 O -0.214 6.214 6 C 0.022 3.978 7 C 0.011 3.989 8 C -0.546 4.546 9 H 0.074 0.926 10 C -0.167 4.167 11 N -0.533 5.533 12 Si 0.765 3.235 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.211 1.211 16 C -0.218 4.218 17 C -0.220 4.220 18 C -0.160 4.160 19 C -0.110 4.110 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.139 4.139 23 C 0.020 3.980 24 N -0.241 5.241 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.158 0.842 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.175 0.825 38 H 0.189 0.811 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.815 -13.152 -5.386 14.236 hybrid contribution 0.596 1.516 0.902 1.862 sum -0.219 -11.636 -4.484 12.472 Atomic orbital electron populations 1.20842 0.85926 1.04421 1.04477 1.21676 0.98661 0.86756 0.89203 1.22081 0.93309 1.01253 1.15368 1.19844 0.91523 0.86678 0.89360 1.85993 1.37804 1.12908 1.84719 1.22685 0.93188 0.79977 1.01920 1.18941 0.97835 0.91665 0.90464 1.20705 0.99523 1.44455 0.89948 0.92633 1.25535 0.95522 0.94016 1.01634 1.69897 1.08020 1.48656 1.26687 0.85782 0.79895 0.77788 0.80002 1.19120 1.19979 1.21090 1.22990 0.97931 0.96082 1.04833 1.22821 0.96230 1.03653 0.99279 1.18636 0.96212 0.91155 1.09984 1.21090 0.92229 0.99936 0.97706 1.21243 1.01897 0.91260 1.00393 1.21362 0.93056 0.99852 0.95143 1.20994 0.95098 0.95449 1.02342 1.19152 0.89277 0.92947 0.96593 1.67935 1.08239 1.28457 1.19447 0.88396 0.89459 0.89591 0.84175 0.93814 0.88917 0.92390 0.89781 0.90130 0.89935 0.89698 0.86004 0.82499 0.81086 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 10.14 71.24 0.72 -1.65 16 2 C 0.19 6.30 6.78 42.83 0.29 6.59 16 3 C -0.30 -11.39 8.73 22.46 0.20 -11.19 16 4 C 0.18 7.64 6.73 23.05 0.16 7.80 16 5 O -0.30 -14.13 9.43 -88.97 -0.84 -14.97 16 6 C 0.10 4.53 4.44 71.98 0.32 4.85 16 7 C 0.01 0.56 1.98 -52.93 -0.10 0.46 16 8 C -0.51 -27.64 8.98 25.60 0.23 -27.41 16 9 H 0.06 3.03 7.91 -2.91 -0.02 3.01 16 10 C 0.03 1.84 5.03 84.65 0.43 2.26 16 11 N -0.90 -48.97 11.14 21.45 0.24 -48.74 16 12 Si 0.94 43.08 29.60 68.60 2.03 45.11 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 C -0.18 -7.79 9.88 30.59 0.30 -7.48 16 17 C -0.18 -7.69 9.93 30.59 0.30 -7.39 16 18 C -0.16 -6.03 5.75 -21.21 -0.12 -6.15 16 19 C -0.09 -3.06 9.58 22.29 0.21 -2.84 16 20 C -0.13 -3.21 9.96 22.05 0.22 -2.99 16 21 C -0.07 -1.60 9.94 22.03 0.22 -1.38 16 22 C -0.12 -3.18 9.98 22.35 0.22 -2.96 16 23 C 0.14 4.92 6.60 40.23 0.27 5.19 16 24 N -0.53 -18.38 10.22 -177.03 -1.81 -20.19 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.14 5.19 6.43 -2.91 -0.02 5.17 16 29 H 0.04 1.88 7.24 -2.39 -0.02 1.87 16 30 H 0.09 4.84 5.25 -2.39 -0.01 4.83 16 31 H 0.27 13.87 8.32 -92.71 -0.77 13.10 16 32 H 0.08 3.28 8.08 -2.38 -0.02 3.26 16 33 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 36 H 0.12 4.32 7.67 -2.91 -0.02 4.30 16 37 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -63.31 329.99 4.53 -58.78 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.05 Total: 24.29 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 3.86 Total: -44.29 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -1.57 Total: -68.93 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.84 Total: -14.97 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -63.31 4.53 -58.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596280607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.539 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds