Wall clock time and date at job start Tue Mar 31 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31045 * 119.16838 * 2 1 4 4 C 1.33658 * 121.40313 * 179.97438 * 3 2 1 5 5 C 1.40604 * 121.00955 * 179.97438 * 4 3 2 6 6 C 1.36071 * 119.76231 * 180.02562 * 5 4 3 7 7 C 1.39359 * 121.08124 * 0.02562 * 6 5 4 8 8 C 1.36132 * 120.86568 * 0.02562 * 7 6 5 9 9 C 1.40467 * 119.61588 * 359.96647 * 8 7 6 10 10 C 1.40650 * 121.32632 * 180.02562 * 9 8 7 11 11 C 1.37037 * 118.12939 * 180.02562 * 10 9 8 12 12 O 1.35917 * 120.09244 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99846 * 5.92856 * 12 11 10 14 14 C 1.53004 * 109.46759 * 174.77990 * 13 12 11 15 15 C 1.50696 * 115.55022 * 281.19586 * 14 13 12 16 16 H 1.08005 * 119.99782 * 145.80768 * 15 14 13 17 17 C 1.37875 * 120.00116 * 325.80825 * 15 14 13 18 18 N 1.31515 * 119.99981 * 165.44647 * 17 15 14 19 19 Si 1.86799 * 120.00164 * 345.44871 * 17 15 14 20 20 H 1.48500 * 109.47009 * 95.61416 * 19 17 15 21 21 H 1.48489 * 109.47404 * 215.61469 * 19 17 15 22 22 H 1.48503 * 109.46652 * 335.61641 * 19 17 15 23 23 C 1.53007 * 117.49417 * 135.48943 * 14 13 12 24 24 C 1.53007 * 117.49695 * 66.86868 * 14 13 12 25 25 H 1.09001 * 109.46849 * 88.69159 * 1 2 3 26 26 H 1.09006 * 109.46968 * 208.68549 * 1 2 3 27 27 H 1.08997 * 109.47023 * 328.69096 * 1 2 3 28 28 H 1.08003 * 120.11935 * 0.04295 * 5 4 3 29 29 H 1.08009 * 119.45939 * 180.02562 * 6 5 4 30 30 H 1.07995 * 119.56685 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.18671 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.93678 * 359.74955 * 10 9 8 33 33 H 1.08997 * 109.47100 * 294.77667 * 13 12 11 34 34 H 1.08993 * 109.47032 * 54.78237 * 13 12 11 35 35 H 0.97003 * 120.00392 * 179.97438 * 18 17 15 36 36 H 1.08992 * 117.49969 * 359.97438 * 23 14 13 37 37 H 1.08999 * 117.49559 * 145.02231 * 23 14 13 38 38 H 1.08996 * 117.49734 * 214.97576 * 24 14 13 39 39 H 1.09000 * 117.49936 * 359.97334 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1457 1.1443 0.0000 4 6 3.4813 1.1964 0.0005 5 6 4.1581 2.4288 0.0000 6 6 5.5186 2.4523 0.0000 7 6 6.2585 1.2713 0.0000 8 6 5.6391 0.0591 -0.0005 9 6 4.2358 -0.0034 -0.0004 10 6 3.5587 -1.2362 -0.0004 11 6 2.1884 -1.2208 -0.0008 12 8 1.4937 -2.3890 -0.0013 13 6 2.2506 -3.5939 0.1301 14 6 1.2973 -4.7856 0.2396 15 6 0.6699 -4.9938 1.5939 16 1 -0.3373 -5.3763 1.6693 17 6 1.3817 -4.6959 2.7365 18 7 0.7606 -4.5998 3.8918 19 14 3.2281 -4.4287 2.6437 20 1 3.5129 -2.9757 2.5294 21 1 3.8680 -4.9632 3.8724 22 1 3.7712 -5.1346 1.4555 23 6 1.6254 -6.0310 -0.5865 24 6 0.4550 -5.1318 -0.9900 25 1 -0.3633 0.0235 -1.0274 26 1 -0.3633 -0.9016 0.4933 27 1 -0.3633 0.8780 0.5340 28 1 3.6001 3.3536 -0.0002 29 1 6.0335 3.4017 0.0000 30 1 7.3374 1.3185 -0.0004 31 1 6.2233 -0.8493 -0.0009 32 1 4.1034 -2.1688 -0.0045 33 1 2.8894 -3.7189 -0.7442 34 1 2.8682 -3.5391 1.0265 35 1 1.2613 -4.3906 4.6958 36 1 2.5201 -6.0011 -1.2082 37 1 1.3876 -7.0012 -0.1504 38 1 -0.5527 -5.5105 -0.8193 39 1 0.5798 -4.5103 -1.8767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596286212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:29 Heat of formation + Delta-G solvation = 53.028780 kcal Electronic energy + Delta-G solvation = -21926.118858 eV Core-core repulsion = 18800.341407 eV Total energy + Delta-G solvation = -3125.777452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94883 -38.89041 -37.11031 -36.00883 -32.97922 -32.32664 -31.68634 -29.47367 -27.68985 -27.57362 -25.43997 -23.09332 -22.50780 -22.00405 -21.51221 -19.33569 -18.46204 -17.68267 -16.86499 -16.33868 -16.10600 -15.51250 -14.86414 -14.68685 -14.32699 -13.98412 -13.81965 -13.30720 -13.08653 -12.97949 -12.85639 -12.57843 -12.13991 -11.89510 -11.74718 -11.63153 -11.25014 -11.13287 -11.01715 -10.69237 -10.48405 -10.27399 -9.76102 -9.69845 -9.50052 -9.39592 -8.86933 -8.47154 -8.29221 -7.80497 -6.27986 -4.18944 0.45808 0.97657 2.08335 2.96825 3.05379 3.17293 3.23698 3.43662 4.17729 4.20704 4.31495 4.64752 4.71716 4.78663 4.86295 4.95370 5.14465 5.22548 5.28973 5.41822 5.46584 5.52440 5.68970 5.73870 5.82212 5.89387 5.94334 5.98740 6.06232 6.14055 6.26971 6.37283 6.40337 6.42754 6.45976 6.54988 6.62904 6.79522 6.85664 7.04059 7.58450 7.64473 8.03007 8.36133 8.78521 9.35840 10.84515 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.005685 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.207543 B = 4924.159271 C = 5312.476308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.157 3.843 3 N -0.449 5.449 4 C 0.091 3.909 5 C -0.079 4.079 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.107 4.107 9 C -0.063 4.063 10 C -0.180 4.180 11 C 0.101 3.899 12 O -0.276 6.276 13 C 0.088 3.912 14 C 0.006 3.994 15 C -0.481 4.481 16 H 0.083 0.917 17 C 0.079 3.921 18 N -0.880 5.880 19 Si 0.872 3.128 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.263 1.263 23 C -0.199 4.199 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 10.180 -8.880 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 N -0.159 5.159 4 C -0.030 4.030 5 C -0.098 4.098 6 C -0.142 4.142 7 C -0.132 4.132 8 C -0.126 4.126 9 C -0.065 4.065 10 C -0.207 4.207 11 C 0.052 3.948 12 O -0.187 6.187 13 C 0.014 3.986 14 C 0.005 3.995 15 C -0.518 4.518 16 H 0.101 0.899 17 C -0.124 4.124 18 N -0.516 5.516 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.188 1.188 23 C -0.237 4.237 24 C -0.215 4.215 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.581 10.994 -8.671 15.923 hybrid contribution 1.940 -0.818 0.137 2.110 sum 9.521 10.176 -8.534 16.341 Atomic orbital electron populations 1.20742 0.87474 1.04470 1.03281 1.21123 0.97704 0.85341 0.95643 1.67912 1.08536 1.26810 1.12598 1.18774 0.89097 0.93009 1.02075 1.20709 0.94011 0.96135 0.98952 1.20775 0.93755 0.98375 1.01322 1.20841 0.99997 0.92326 1.00024 1.20948 0.92688 0.98476 1.00459 1.18604 0.94693 0.92947 1.00291 1.21473 0.93615 0.98472 1.07107 1.19806 0.90955 0.88576 0.95509 1.86238 1.35472 1.11509 1.85433 1.23033 0.94185 0.82636 0.98732 1.19198 0.97273 0.89332 0.93719 1.20283 1.01550 1.43910 0.86013 0.89942 1.24959 0.97844 0.94166 0.95467 1.69909 1.35798 1.46485 0.99404 0.87076 0.87258 0.77893 0.77433 1.20618 1.21867 1.18833 1.23202 0.98314 0.97015 1.05135 1.22729 0.95934 1.03886 0.98907 0.90231 0.88878 0.90473 0.84988 0.85644 0.85840 0.85623 0.84410 0.93342 0.92974 0.92278 0.91264 0.88944 0.89459 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.94 36.01 0.36 -1.21 16 2 C 0.16 2.84 6.80 -82.34 -0.56 2.28 16 3 N -0.45 -7.93 10.23 -7.10 -0.07 -8.00 16 4 C 0.09 1.53 6.60 -84.84 -0.56 0.97 16 5 C -0.08 -1.07 9.98 -39.47 -0.39 -1.46 16 6 C -0.12 -1.37 9.94 -39.94 -0.40 -1.77 16 7 C -0.11 -1.30 9.96 -39.92 -0.40 -1.70 16 8 C -0.11 -1.46 9.77 -39.50 -0.39 -1.85 16 9 C -0.06 -1.07 5.74 -106.81 -0.61 -1.68 16 10 C -0.18 -3.30 8.83 -39.11 -0.35 -3.65 16 11 C 0.10 1.98 6.63 -39.43 -0.26 1.72 16 12 O -0.28 -5.86 9.10 -19.48 -0.18 -6.04 16 13 C 0.09 1.89 3.68 37.16 0.14 2.03 16 14 C 0.01 0.13 1.52 -155.65 -0.24 -0.10 16 15 C -0.48 -13.14 9.57 -34.44 -0.33 -13.47 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.08 2.23 5.41 -17.82 -0.10 2.13 16 18 N -0.88 -26.15 13.96 55.43 0.77 -25.38 16 19 Si 0.87 21.17 24.32 -169.99 -4.13 17.04 16 20 H -0.28 -6.69 6.88 56.52 0.39 -6.30 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -5.95 6.76 56.52 0.38 -5.57 16 23 C -0.20 -3.96 9.88 -26.72 -0.26 -4.22 16 24 C -0.18 -3.51 9.95 -26.72 -0.27 -3.78 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.09 1.56 7.44 -51.93 -0.39 1.17 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 29 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.14 2.39 6.38 -52.49 -0.34 2.05 16 33 H 0.05 0.91 7.54 -51.93 -0.39 0.52 16 34 H 0.05 1.20 1.32 -51.93 -0.07 1.13 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 322.63 15.07 4.86 4.86 Total: -1.00 -30.39 322.63 -8.36 -38.75 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.00 Total: 4.54 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -4.61 Total: -25.77 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.70 Total: -33.38 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.18 Total: -6.04 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.13 Total: 17.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.39 -8.36 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.778 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds