Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36104 * 120.11949 * 2 1 4 4 C 1.39318 * 121.07512 * 180.25518 * 3 2 1 5 5 C 1.36170 * 120.85774 * 359.45117 * 4 3 2 6 6 C 1.40422 * 119.61903 * 0.52230 * 5 4 3 7 7 C 1.40697 * 121.32434 * 179.74072 * 6 5 4 8 8 C 1.37000 * 118.12981 * 180.02562 * 7 6 5 9 9 O 1.35911 * 120.09257 * 180.02562 * 8 7 6 10 10 C 1.42903 * 116.99915 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.46830 * 180.02562 * 10 9 8 12 12 C 1.50704 * 115.55032 * 65.11247 * 11 10 9 13 13 H 1.07996 * 119.99847 * 266.11379 * 12 11 10 14 14 C 1.37873 * 119.99630 * 86.11312 * 12 11 10 15 15 N 1.31511 * 120.00640 * 353.70248 * 14 12 11 16 16 Si 1.86806 * 119.99734 * 173.70858 * 14 12 11 17 17 H 1.48503 * 109.47122 * 59.99636 * 16 14 12 18 18 H 1.48498 * 109.46927 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46958 * 299.99748 * 16 14 12 20 20 C 1.53003 * 117.50165 * 279.44393 * 11 10 9 21 21 C 1.52995 * 117.49825 * 210.78261 * 11 10 9 22 22 C 1.39854 * 119.81790 * 359.97438 * 8 7 6 23 23 N 1.31021 * 121.67025 * 0.02562 * 22 8 7 24 24 C 1.33697 * 121.39704 * 359.95801 * 23 22 8 25 25 H 1.09004 * 109.47310 * 90.00227 * 1 2 3 26 26 H 1.08998 * 109.47161 * 210.00115 * 1 2 3 27 27 H 1.09001 * 109.46789 * 329.99706 * 1 2 3 28 28 H 1.07999 * 119.46487 * 359.97426 * 3 2 1 29 29 H 1.07996 * 119.57225 * 179.71737 * 4 3 2 30 30 H 1.07999 * 120.18600 * 180.27895 * 5 4 3 31 31 H 1.07999 * 120.93380 * 0.03993 * 7 6 5 32 32 H 1.08996 * 109.47224 * 299.99919 * 10 9 8 33 33 H 1.09000 * 109.46687 * 60.00644 * 10 9 8 34 34 H 0.97000 * 120.00559 * 180.02562 * 15 14 12 35 35 H 1.09001 * 117.49250 * 359.97438 * 20 11 10 36 36 H 1.08998 * 117.50085 * 145.01769 * 20 11 10 37 37 H 1.09005 * 117.50069 * 214.97591 * 21 11 10 38 38 H 1.08997 * 117.50117 * 359.97438 * 21 11 10 39 39 H 1.07997 * 119.16673 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.1773 0.0000 4 6 3.5830 1.2005 -0.0053 5 6 4.3008 0.0434 0.0005 6 6 3.6294 -1.1899 0.0009 7 6 4.3352 -2.4070 0.0014 8 6 3.6141 -3.5718 0.0013 9 8 4.2552 -4.7702 0.0023 10 6 3.4386 -5.9429 0.0026 11 6 4.3309 -7.1857 0.0044 12 6 5.1738 -7.3789 1.2387 13 1 6.1878 -7.0080 1.2636 14 6 4.6504 -8.0293 2.3359 15 7 3.3806 -8.3711 2.3540 16 14 5.7449 -8.4248 3.7972 17 1 6.2981 -7.1652 4.3566 18 1 4.9475 -9.1204 4.8390 19 1 6.8593 -9.3025 3.3577 20 6 4.9250 -7.6309 -1.3335 21 6 3.7964 -8.4401 -0.6895 22 6 2.2164 -3.5244 0.0012 23 7 1.5666 -2.3867 0.0007 24 6 2.2123 -1.2159 0.0012 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6432 2.1086 -0.0004 29 1 4.1002 2.1486 -0.0098 30 1 5.3804 0.0741 0.0009 31 1 5.4151 -2.4225 0.0022 32 1 2.8089 -5.9469 0.8923 33 1 2.8098 -5.9479 -0.8877 34 1 3.0123 -8.8283 3.1262 35 1 4.6797 -7.0385 -2.2150 36 1 5.9252 -8.0638 -1.3209 37 1 4.0548 -9.4053 -0.2536 38 1 2.8089 -8.3802 -1.1469 39 1 1.6584 -4.4491 0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596300783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = 33.784227 kcal Electronic energy + Delta-G solvation = -21202.550278 eV Core-core repulsion = 18075.938320 eV Total energy + Delta-G solvation = -3126.611958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84581 -38.71695 -36.74918 -35.76845 -33.87396 -32.00650 -30.96076 -29.68672 -27.08665 -26.56962 -25.37725 -23.96588 -22.95750 -21.20372 -20.88747 -19.34216 -18.27573 -17.45938 -17.02331 -15.99635 -15.41449 -15.26295 -14.65829 -14.42715 -14.22605 -14.17288 -13.79037 -13.27582 -13.06737 -12.99138 -12.69919 -12.35946 -12.23324 -11.69767 -11.54215 -11.45989 -11.29464 -11.02747 -11.00109 -10.78385 -10.53339 -10.30315 -9.71940 -9.61337 -9.27817 -8.91091 -8.50817 -8.34682 -8.27799 -7.64944 -6.12219 -4.17060 0.50175 1.03247 2.14325 3.03569 3.28198 3.32861 3.35982 3.71304 4.23210 4.36122 4.45584 4.65695 4.80599 4.85859 5.09395 5.16933 5.19927 5.22552 5.31498 5.50215 5.52462 5.66898 5.74824 5.83883 5.88855 5.98423 6.11223 6.17367 6.24384 6.26834 6.41566 6.44517 6.50515 6.54897 6.66289 6.69366 6.95379 6.96443 7.27020 7.37615 7.82034 7.90891 8.02747 8.33742 8.84690 9.49305 10.97154 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.003930 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.634599 B = 7123.580085 C = 7341.065275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.043 4.043 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.054 4.054 7 C -0.131 4.131 8 C 0.102 3.898 9 O -0.286 6.286 10 C 0.098 3.902 11 C 0.040 3.960 12 C -0.490 4.490 13 H 0.062 0.938 14 C 0.071 3.929 15 N -0.883 5.883 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.205 4.205 21 C -0.144 4.144 22 C 0.068 3.932 23 N -0.441 5.441 24 C 0.083 3.917 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 14.994 -5.247 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.152 4.152 4 C -0.124 4.124 5 C -0.133 4.133 6 C -0.056 4.056 7 C -0.158 4.158 8 C 0.052 3.948 9 O -0.197 6.197 10 C 0.024 3.976 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.080 0.920 14 C -0.133 4.133 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.242 4.242 21 C -0.182 4.182 22 C -0.106 4.106 23 N -0.149 5.149 24 C -0.039 4.039 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.777 14.928 -5.121 16.227 hybrid contribution 1.256 -0.442 0.873 1.592 sum -2.521 14.486 -4.248 15.305 Atomic orbital electron populations 1.20696 0.90464 1.02958 1.02401 1.19521 0.96365 0.90812 0.97711 1.20639 0.94231 0.97300 1.03031 1.20817 0.94051 0.98133 0.99444 1.20894 0.99849 0.91134 1.01382 1.18557 0.93480 0.93906 0.99632 1.20609 1.00721 0.88904 1.05527 1.19956 0.92085 0.88145 0.94603 1.86265 1.36043 1.11335 1.86047 1.22767 0.93197 0.82455 0.99220 1.18689 0.96994 0.88977 0.91408 1.20347 0.98569 1.37125 0.96741 0.91958 1.24983 0.94927 0.95169 0.98181 1.69966 1.11838 1.39789 1.30320 0.86656 0.80637 0.78736 0.82030 1.20125 1.21231 1.20098 1.23017 0.98046 1.05870 0.97303 1.22541 0.95262 0.97260 1.03094 1.23394 0.91229 0.97166 0.98854 1.67857 1.39395 0.97358 1.10314 1.18629 0.89772 0.92074 1.03447 0.91176 0.90340 0.91868 0.85823 0.85892 0.85434 0.83841 0.91003 0.94769 0.92820 0.91504 0.90065 0.89406 0.91626 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.80 36.01 0.35 -0.85 16 2 C -0.04 -0.58 5.89 -104.51 -0.62 -1.20 16 3 C -0.13 -1.47 9.58 -39.95 -0.38 -1.86 16 4 C -0.11 -1.15 9.96 -39.92 -0.40 -1.55 16 5 C -0.11 -1.42 9.77 -39.50 -0.39 -1.80 16 6 C -0.05 -0.83 5.74 -106.81 -0.61 -1.45 16 7 C -0.13 -2.18 9.82 -39.10 -0.38 -2.56 16 8 C 0.10 1.89 6.66 -39.43 -0.26 1.63 16 9 O -0.29 -6.07 10.06 -19.46 -0.20 -6.27 16 10 C 0.10 2.12 4.56 37.16 0.17 2.29 16 11 C 0.04 0.95 1.62 -155.66 -0.25 0.70 16 12 C -0.49 -13.12 8.77 -34.44 -0.30 -13.42 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 15 N -0.88 -24.12 12.88 55.43 0.71 -23.40 16 16 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 21 C -0.14 -3.21 9.37 -26.70 -0.25 -3.46 16 22 C 0.07 1.19 10.19 -17.29 -0.18 1.02 16 23 N -0.44 -7.59 9.40 -10.85 -0.10 -7.70 16 24 C 0.08 1.33 6.58 -84.84 -0.56 0.77 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.97 7.55 -51.93 -0.39 0.58 16 27 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 32 H 0.07 1.66 7.66 -51.93 -0.40 1.26 16 33 H 0.03 0.66 7.61 -51.93 -0.40 0.26 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.17 2.72 6.25 -52.49 -0.33 2.39 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -28.83 333.07 -9.29 -38.12 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.28 Total: 2.96 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -4.42 Total: -24.56 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.61 Total: -31.10 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.20 Total: -6.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.83 -9.29 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596300783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.902 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds