Wall clock time and date at job start Tue Mar 31 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48504 * 109.47014 * 264.94562 * 3 2 1 5 5 H 1.48499 * 109.47154 * 24.94691 * 3 2 1 6 6 H 1.48500 * 109.47308 * 144.94539 * 3 2 1 7 7 C 1.37882 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00390 * 0.42112 * 7 2 1 9 9 C 1.50701 * 119.99678 * 180.41862 * 7 2 1 10 10 C 1.52997 * 115.55290 * 88.60104 * 9 7 2 11 11 S 1.81400 * 109.47207 * 39.61711 * 10 9 7 12 12 C 1.81396 * 103.00097 * 184.77153 * 11 10 9 13 13 C 1.53001 * 109.46810 * 184.76993 * 12 11 10 14 14 H 1.09004 * 108.44787 * 56.21875 * 13 12 11 15 15 C 1.51784 * 108.61329 * 174.08109 * 13 12 11 16 16 C 1.52988 * 110.84023 * 188.13617 * 15 13 12 17 17 N 1.47243 * 108.65993 * 273.48339 * 16 15 13 18 18 C 1.33376 * 120.39387 * 72.00589 * 17 16 15 19 19 O 1.21279 * 119.89199 * 179.70125 * 18 17 16 20 20 C 1.51424 * 120.21169 * 359.71356 * 18 17 16 21 21 C 1.51790 * 108.61772 * 298.34532 * 13 12 11 22 22 C 1.53004 * 117.51928 * 234.30321 * 9 7 2 23 23 C 1.52999 * 60.00262 * 107.48102 * 22 9 7 24 24 H 0.97000 * 119.99490 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46844 * 279.61845 * 10 9 7 26 26 H 1.08996 * 109.47547 * 159.61922 * 10 9 7 27 27 H 1.08992 * 109.47415 * 64.77196 * 12 11 10 28 28 H 1.08999 * 109.46892 * 304.76697 * 12 11 10 29 29 H 1.08997 * 109.19624 * 308.47529 * 15 13 12 30 30 H 1.09000 * 109.19460 * 67.80005 * 15 13 12 31 31 H 1.09007 * 109.60316 * 33.27375 * 16 15 13 32 32 H 1.09001 * 109.60757 * 153.76298 * 16 15 13 33 33 H 0.96993 * 119.82081 * 252.00318 * 17 16 15 34 34 H 1.09004 * 109.63078 * 169.06428 * 20 18 17 35 35 H 1.08999 * 109.63591 * 48.47061 * 20 18 17 36 36 H 1.09003 * 109.22016 * 292.39572 * 21 13 12 37 37 H 1.08993 * 109.22060 * 51.73958 * 21 13 12 38 38 H 1.08996 * 117.49678 * 214.97438 * 22 9 7 39 39 H 1.09000 * 117.49759 * 359.97438 * 22 9 7 40 40 H 1.08996 * 117.49749 * 252.51472 * 23 22 9 41 41 H 1.08993 * 117.50097 * 107.48897 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6036 1.9846 -1.3947 5 1 1.3975 2.6811 0.5905 6 1 3.4893 1.4733 0.8041 7 6 2.0044 -1.1942 0.0005 8 1 1.4645 -2.1294 -0.0059 9 6 3.5114 -1.1942 0.0101 10 6 4.1626 -1.1650 1.3942 11 16 3.2276 -2.2316 2.5250 12 6 4.0486 -1.9556 4.1188 13 6 3.4441 -2.8865 5.1719 14 1 3.5342 -3.9133 4.8171 15 6 4.2399 -2.7463 6.4567 16 6 3.8087 -3.7972 7.4815 17 7 2.6607 -3.2726 8.2397 18 6 1.4626 -3.1673 7.6632 19 8 0.5220 -2.7391 8.2979 20 6 1.2729 -3.5809 6.2190 21 6 1.9709 -2.5540 5.3241 22 6 4.2253 -1.9825 -1.0899 23 6 4.2252 -0.4529 -1.1222 24 1 -0.4849 0.8401 -0.0004 25 1 4.1621 -0.1435 1.7745 26 1 5.1889 -1.5247 1.3207 27 1 3.9072 -0.9194 4.4258 28 1 5.1141 -2.1629 4.0194 29 1 5.3000 -2.8733 6.2373 30 1 4.0767 -1.7520 6.8726 31 1 3.5197 -4.7134 6.9663 32 1 4.6336 -4.0030 8.1636 33 1 2.7761 -3.0020 9.1639 34 1 0.2091 -3.6094 5.9829 35 1 1.7129 -4.5653 6.0591 36 1 1.8706 -1.5637 5.7684 37 1 1.4994 -2.5550 4.3414 38 1 5.1588 -2.4803 -0.8274 39 1 3.6050 -2.5016 -1.8206 40 1 3.6047 0.0346 -1.8742 41 1 5.1585 0.0557 -0.8810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596371608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:48 Heat of formation + Delta-G solvation = -28.786527 kcal Electronic energy + Delta-G solvation = -20270.662133 eV Core-core repulsion = 17276.780855 eV Total energy + Delta-G solvation = -2993.881278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25355 -37.24668 -36.97198 -34.50216 -32.05641 -31.51980 -28.93949 -28.02492 -25.46051 -24.49708 -23.89603 -21.68600 -20.46980 -19.74055 -19.03798 -17.36449 -16.90355 -16.43253 -15.45383 -15.10181 -14.91243 -14.54273 -14.36389 -13.88281 -13.79501 -13.48622 -13.37889 -13.02295 -12.70059 -12.62604 -12.42543 -12.20135 -11.65728 -11.53940 -11.11241 -10.92642 -10.77994 -10.68341 -10.62745 -10.37886 -10.17750 -9.77258 -9.66535 -9.32345 -9.18006 -9.01281 -8.56253 -8.37219 -6.75155 -6.07032 -4.07975 2.33095 2.63633 3.18439 3.28568 3.37312 3.38522 3.45645 4.43093 4.43629 4.53666 4.60070 4.67375 4.87600 5.07170 5.15835 5.20637 5.24938 5.32141 5.46299 5.49239 5.60301 5.65280 5.77565 5.85624 5.89350 5.93720 6.01363 6.06675 6.13188 6.31027 6.35920 6.43377 6.44861 6.67082 6.67657 6.99051 7.07999 7.12940 7.72716 8.17422 8.51596 8.97223 9.55818 11.04940 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004419 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.016781 B = 6334.049793 C = 6954.461206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.084 3.916 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.474 4.474 8 H 0.082 0.918 9 C 0.014 3.986 10 C -0.053 4.053 11 S -0.191 6.191 12 C -0.118 4.118 13 C -0.067 4.067 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.110 3.890 17 N -0.728 5.728 18 C 0.519 3.481 19 O -0.556 6.556 20 C -0.137 4.137 21 C -0.114 4.114 22 C -0.176 4.176 23 C -0.200 4.200 24 H 0.264 0.736 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.672 -6.859 12.407 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.119 4.119 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.012 3.988 10 C -0.202 4.202 11 S 0.038 5.962 12 C -0.266 4.266 13 C -0.086 4.086 14 H 0.097 0.903 15 C -0.175 4.175 16 C -0.014 4.014 17 N -0.380 5.380 18 C 0.306 3.694 19 O -0.434 6.434 20 C -0.177 4.177 21 C -0.152 4.152 22 C -0.213 4.213 23 C -0.239 4.239 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.119 -7.244 12.309 17.504 hybrid contribution 1.815 2.061 0.494 2.790 sum 11.934 -5.183 12.803 18.254 Atomic orbital electron populations 1.69875 1.06240 1.26987 1.49817 1.24894 0.94474 0.98628 0.93874 0.86917 0.80071 0.83809 0.78456 1.20444 1.22229 1.19008 1.20109 0.85686 0.94622 1.50822 0.89971 1.19081 0.95245 1.00051 0.84401 1.23237 0.98067 1.00056 0.98824 1.87270 1.47505 1.60680 1.00746 1.23623 1.01994 1.02519 0.98467 1.20540 0.94706 0.99996 0.93370 0.90258 1.21922 1.00287 1.00043 0.95223 1.21779 0.88149 0.96892 0.94596 1.45998 1.09814 1.66281 1.15919 1.20781 0.81968 0.76840 0.89805 1.90742 1.40481 1.46517 1.65662 1.22008 1.04110 1.00782 0.90792 1.21418 0.94221 0.98108 1.01462 1.22876 1.01015 0.92949 1.04454 1.23034 1.01457 0.94839 1.04599 0.92586 0.91242 0.92720 0.90999 0.91252 0.90453 0.91068 0.90281 0.89593 0.76749 0.88208 0.89310 0.91624 0.87994 0.90976 0.89341 0.89121 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.88 21.49 24.90 -169.99 -4.23 17.26 16 4 H -0.28 -6.65 6.94 56.52 0.39 -6.26 16 5 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.14 5.68 56.52 0.32 -5.82 16 7 C -0.47 -12.77 8.14 -34.44 -0.28 -13.05 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.01 0.32 1.15 -155.65 -0.18 0.14 16 10 C -0.05 -1.06 5.93 37.16 0.22 -0.84 16 11 S -0.19 -3.59 18.98 -107.50 -2.04 -5.63 16 12 C -0.12 -1.60 5.32 37.16 0.20 -1.40 16 13 C -0.07 -0.74 1.73 -91.85 -0.16 -0.90 16 14 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 15 C -0.13 -1.10 4.98 -27.35 -0.14 -1.23 16 16 C 0.11 0.73 6.46 -3.64 -0.02 0.70 16 17 N -0.73 -6.69 5.28 -59.86 -0.32 -7.00 16 18 C 0.52 6.71 7.06 -11.25 -0.08 6.63 16 19 O -0.56 -9.67 17.92 5.56 0.10 -9.57 16 20 C -0.14 -1.61 5.57 -27.50 -0.15 -1.76 16 21 C -0.11 -1.49 4.84 -27.32 -0.13 -1.62 16 22 C -0.18 -3.48 9.88 -26.73 -0.26 -3.75 16 23 C -0.20 -4.15 7.57 -26.73 -0.20 -4.35 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.07 1.43 6.58 -51.92 -0.34 1.09 16 26 H 0.05 0.96 7.94 -51.93 -0.41 0.54 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.84 8.06 -51.92 -0.42 0.42 16 29 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 30 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 31 H 0.08 0.49 6.70 -51.92 -0.35 0.14 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.40 3.19 8.91 -40.82 -0.36 2.82 16 34 H 0.10 1.25 8.13 -51.93 -0.42 0.82 16 35 H 0.09 0.84 6.77 -51.93 -0.35 0.48 16 36 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 37 H 0.10 1.60 6.57 -51.93 -0.34 1.26 16 38 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 39 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.09 1.99 6.88 -51.93 -0.36 1.63 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -32.00 330.26 -8.79 -40.80 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.77 Total: 4.31 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.29 Total: -19.17 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.46 Total: -32.96 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.10 Total: -9.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.23 Total: 17.26 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.04 Total: -5.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.00 -8.79 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596371608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.009 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds