Wall clock time and date at job start Tue Mar 31 2020 05:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48504 * 109.47014 * 264.94562 * 3 2 1 5 5 H 1.48499 * 109.47154 * 24.94691 * 3 2 1 6 6 H 1.48500 * 109.47308 * 144.94539 * 3 2 1 7 7 C 1.37882 * 119.99431 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00390 * 0.42112 * 7 2 1 9 9 C 1.50701 * 119.99678 * 180.41862 * 7 2 1 10 10 C 1.52997 * 115.55290 * 88.60104 * 9 7 2 11 11 S 1.81400 * 109.47207 * 39.61711 * 10 9 7 12 12 C 1.81396 * 103.00097 * 184.77153 * 11 10 9 13 13 C 1.53001 * 109.46810 * 184.76993 * 12 11 10 14 14 H 1.09004 * 108.44787 * 56.21875 * 13 12 11 15 15 C 1.51784 * 108.61329 * 174.08109 * 13 12 11 16 16 C 1.52988 * 110.84023 * 188.13617 * 15 13 12 17 17 N 1.47243 * 108.65993 * 273.48339 * 16 15 13 18 18 C 1.33376 * 120.39387 * 72.00589 * 17 16 15 19 19 O 1.21279 * 119.89199 * 179.70125 * 18 17 16 20 20 C 1.51424 * 120.21169 * 359.71356 * 18 17 16 21 21 C 1.51790 * 108.61772 * 298.34532 * 13 12 11 22 22 C 1.53004 * 117.51928 * 234.30321 * 9 7 2 23 23 C 1.52999 * 60.00262 * 107.48102 * 22 9 7 24 24 H 0.97000 * 119.99490 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46844 * 279.61845 * 10 9 7 26 26 H 1.08996 * 109.47547 * 159.61922 * 10 9 7 27 27 H 1.08992 * 109.47415 * 64.77196 * 12 11 10 28 28 H 1.08999 * 109.46892 * 304.76697 * 12 11 10 29 29 H 1.08997 * 109.19624 * 308.47529 * 15 13 12 30 30 H 1.09000 * 109.19460 * 67.80005 * 15 13 12 31 31 H 1.09007 * 109.60316 * 33.27375 * 16 15 13 32 32 H 1.09001 * 109.60757 * 153.76298 * 16 15 13 33 33 H 0.96993 * 119.82081 * 252.00318 * 17 16 15 34 34 H 1.09004 * 109.63078 * 169.06428 * 20 18 17 35 35 H 1.08999 * 109.63591 * 48.47061 * 20 18 17 36 36 H 1.09003 * 109.22016 * 292.39572 * 21 13 12 37 37 H 1.08993 * 109.22060 * 51.73958 * 21 13 12 38 38 H 1.08996 * 117.49678 * 214.97438 * 22 9 7 39 39 H 1.09000 * 117.49759 * 359.97438 * 22 9 7 40 40 H 1.08996 * 117.49749 * 252.51472 * 23 22 9 41 41 H 1.08993 * 117.50097 * 107.48897 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6036 1.9846 -1.3947 5 1 1.3975 2.6811 0.5905 6 1 3.4893 1.4733 0.8041 7 6 2.0044 -1.1942 0.0005 8 1 1.4645 -2.1294 -0.0059 9 6 3.5114 -1.1942 0.0101 10 6 4.1626 -1.1650 1.3942 11 16 3.2276 -2.2316 2.5250 12 6 4.0486 -1.9556 4.1188 13 6 3.4441 -2.8865 5.1719 14 1 3.5342 -3.9133 4.8171 15 6 4.2399 -2.7463 6.4567 16 6 3.8087 -3.7972 7.4815 17 7 2.6607 -3.2726 8.2397 18 6 1.4626 -3.1673 7.6632 19 8 0.5220 -2.7391 8.2979 20 6 1.2729 -3.5809 6.2190 21 6 1.9709 -2.5540 5.3241 22 6 4.2253 -1.9825 -1.0899 23 6 4.2252 -0.4529 -1.1222 24 1 -0.4849 0.8401 -0.0004 25 1 4.1621 -0.1435 1.7745 26 1 5.1889 -1.5247 1.3207 27 1 3.9072 -0.9194 4.4258 28 1 5.1141 -2.1629 4.0194 29 1 5.3000 -2.8733 6.2373 30 1 4.0767 -1.7520 6.8726 31 1 3.5197 -4.7134 6.9663 32 1 4.6336 -4.0030 8.1636 33 1 2.7761 -3.0020 9.1639 34 1 0.2091 -3.6094 5.9829 35 1 1.7129 -4.5653 6.0591 36 1 1.8706 -1.5637 5.7684 37 1 1.4994 -2.5550 4.3414 38 1 5.1588 -2.4803 -0.8274 39 1 3.6050 -2.5016 -1.8206 40 1 3.6047 0.0346 -1.8742 41 1 5.1585 0.0557 -0.8810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596371608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:47 Heat of formation + Delta-G solvation = -50.210579 kcal Electronic energy + Delta-G solvation = -20271.591149 eV Core-core repulsion = 17276.780855 eV Total energy + Delta-G solvation = -2994.810295 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19899 -38.70258 -38.21222 -35.39002 -34.17228 -32.48437 -29.90428 -29.50792 -27.45257 -25.58678 -24.69698 -23.30612 -21.35900 -20.86312 -20.62048 -18.42337 -18.22565 -17.79193 -16.98202 -16.62044 -16.09740 -15.66975 -15.44086 -15.39168 -14.90727 -14.81031 -14.72591 -14.48086 -14.30085 -13.74140 -13.48639 -13.31555 -12.99924 -12.69694 -12.56753 -12.41592 -12.14822 -12.05199 -11.89923 -11.62680 -11.58943 -11.51729 -10.89768 -10.83238 -10.61347 -10.56155 -10.09518 -10.06274 -8.24405 -8.21005 -6.25643 0.99247 1.34828 1.36364 1.46462 1.61993 2.07515 2.39406 2.40833 3.13273 3.22282 3.54393 3.64286 3.74784 3.95121 4.05686 4.25879 4.27960 4.35631 4.40220 4.42637 4.51057 4.56742 4.60251 4.62622 4.75351 4.84109 4.85653 4.85938 4.94418 5.07314 5.11664 5.14359 5.31524 5.34717 5.43740 5.48648 5.73940 5.93601 6.26259 6.36287 6.78940 7.25088 7.40767 8.93723 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004419 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.016781 B = 6334.049793 C = 6954.461206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.306 1.306 6 H -0.239 1.239 7 C -0.460 4.460 8 H 0.031 0.969 9 C -0.018 4.018 10 C -0.042 4.042 11 S -0.262 6.262 12 C -0.094 4.094 13 C -0.061 4.061 14 H 0.091 0.909 15 C -0.128 4.128 16 C 0.108 3.892 17 N -0.712 5.712 18 C 0.516 3.484 19 O -0.611 6.611 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.158 4.158 23 C -0.193 4.193 24 H 0.262 0.738 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.405 0.595 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.268 -7.372 13.625 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.233 1.233 6 H -0.162 1.162 7 C -0.499 4.499 8 H 0.050 0.950 9 C -0.019 4.019 10 C -0.190 4.190 11 S -0.033 6.033 12 C -0.243 4.243 13 C -0.080 4.080 14 H 0.110 0.890 15 C -0.168 4.168 16 C -0.015 4.015 17 N -0.363 5.363 18 C 0.304 3.696 19 O -0.494 6.494 20 C -0.172 4.172 21 C -0.148 4.148 22 C -0.195 4.195 23 C -0.232 4.232 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.796 -7.779 13.507 21.491 hybrid contribution 0.397 2.080 0.135 2.122 sum 15.193 -5.700 13.642 21.199 Atomic orbital electron populations 1.70043 1.08265 1.27586 1.52980 1.25689 0.95033 1.02338 0.94115 0.86003 0.79562 0.79130 0.79279 1.19208 1.23338 1.16202 1.20173 0.88583 0.92366 1.48767 0.95047 1.19034 0.92711 1.03364 0.86838 1.23064 0.99338 0.99746 0.96832 1.87558 1.50176 1.60753 1.04835 1.23657 1.02940 1.02781 0.94886 1.20584 0.93086 0.99917 0.94460 0.89042 1.21891 1.01259 1.00113 0.93500 1.22082 0.88030 0.96470 0.94952 1.45994 1.09304 1.64579 1.16414 1.20894 0.82503 0.76360 0.89867 1.90717 1.42601 1.49229 1.66827 1.21936 1.03298 1.01813 0.90120 1.21295 0.96174 0.97699 0.99591 1.22917 1.01622 0.92784 1.02225 1.23068 1.01983 0.95557 1.02607 0.92955 0.92093 0.89357 0.91686 0.88362 0.87543 0.92035 0.89097 0.85662 0.75850 0.89935 0.86366 0.93488 0.91356 0.87372 0.90617 0.90855 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.03 1.47 5.47 84.66 0.46 1.93 16 3 Si 0.93 44.47 24.90 68.60 1.71 46.18 16 4 H -0.27 -12.10 6.94 99.48 0.69 -11.41 16 5 H -0.31 -14.95 7.11 99.48 0.71 -14.25 16 6 H -0.24 -10.23 5.68 99.48 0.57 -9.66 16 7 C -0.46 -25.60 8.14 25.60 0.21 -25.40 16 8 H 0.03 2.01 8.06 -2.92 -0.02 1.99 16 9 C -0.02 -0.78 1.15 -52.92 -0.06 -0.84 16 10 C -0.04 -1.55 5.93 71.98 0.43 -1.13 16 11 S -0.26 -9.71 18.98 -56.49 -1.07 -10.78 16 12 C -0.09 -2.32 5.32 71.98 0.38 -1.94 16 13 C -0.06 -1.19 1.73 -11.59 -0.02 -1.21 16 14 H 0.09 1.63 7.88 -2.38 -0.02 1.61 16 15 C -0.13 -1.53 4.98 30.19 0.15 -1.38 16 16 C 0.11 0.92 6.46 86.23 0.56 1.48 16 17 N -0.71 -11.30 5.28 -462.48 -2.44 -13.74 16 18 C 0.52 13.08 7.06 88.10 0.62 13.71 16 19 O -0.61 -21.84 17.92 -3.03 -0.05 -21.89 16 20 C -0.13 -3.08 5.57 30.10 0.17 -2.91 16 21 C -0.11 -2.88 4.84 30.21 0.15 -2.73 16 22 C -0.16 -5.88 9.88 30.60 0.30 -5.58 16 23 C -0.19 -7.43 7.57 30.60 0.23 -7.20 16 24 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.06 2.34 6.58 -2.39 -0.02 2.33 16 26 H 0.09 2.69 7.94 -2.39 -0.02 2.67 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.10 1.91 8.06 -2.39 -0.02 1.89 16 29 H 0.11 0.78 8.03 -2.39 -0.02 0.76 16 30 H 0.06 0.91 8.05 -2.39 -0.02 0.90 16 31 H 0.09 0.66 6.70 -2.38 -0.02 0.65 16 32 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.40 5.49 8.91 -92.71 -0.83 4.67 16 34 H 0.08 2.20 8.13 -2.38 -0.02 2.18 16 35 H 0.12 2.00 6.77 -2.39 -0.02 1.99 16 36 H 0.05 1.38 7.86 -2.39 -0.02 1.36 16 37 H 0.07 2.28 6.57 -2.39 -0.02 2.26 16 38 H 0.11 3.25 8.08 -2.39 -0.02 3.23 16 39 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.07 3.08 6.88 -2.39 -0.02 3.06 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -75.77 330.26 2.05 -73.72 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.03 Total: 19.33 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.58 Total: -33.20 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -2.14 Total: -73.36 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.71 Total: 46.18 kcal Atomic # 16 Polarization: -9.71 SS G_CDS: -1.07 Total: -10.78 kcal Total: -75.77 2.05 -73.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596371608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds