Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48497 * 109.47214 * 270.00445 * 3 2 1 5 5 H 1.48505 * 109.47038 * 30.00125 * 3 2 1 6 6 H 1.48500 * 109.47133 * 150.00092 * 3 2 1 7 7 C 1.37873 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00012 * 173.68938 * 7 2 1 9 9 C 1.50699 * 120.00154 * 353.67681 * 7 2 1 10 10 C 1.53004 * 115.54478 * 85.65882 * 9 7 2 11 11 S 1.81394 * 109.47272 * 65.32940 * 10 9 7 12 12 C 1.81404 * 103.00194 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47220 * 180.02562 * 12 11 10 14 14 H 1.08996 * 108.56421 * 302.93275 * 13 12 11 15 15 C 1.51782 * 108.61771 * 184.99918 * 13 12 11 16 16 C 1.52980 * 110.88582 * 171.87248 * 15 13 12 17 17 N 1.47200 * 108.66359 * 86.46813 * 16 15 13 18 18 C 1.33370 * 120.42315 * 288.04316 * 17 16 15 19 19 O 1.21284 * 119.88810 * 180.27845 * 18 17 16 20 20 C 1.51422 * 120.22276 * 0.30831 * 18 17 16 21 21 C 1.51791 * 108.62044 * 60.73477 * 13 12 11 22 22 C 1.53002 * 117.50387 * 231.32673 * 9 7 2 23 23 C 1.52995 * 117.50364 * 299.99139 * 9 7 2 24 24 H 0.97000 * 119.99521 * 355.01452 * 1 2 3 25 25 H 1.09008 * 109.47011 * 305.32875 * 10 9 7 26 26 H 1.09004 * 109.46680 * 185.33341 * 10 9 7 27 27 H 1.09004 * 109.46806 * 300.00253 * 12 11 10 28 28 H 1.08997 * 109.46992 * 60.00029 * 12 11 10 29 29 H 1.09001 * 109.19363 * 292.23943 * 15 13 12 30 30 H 1.09002 * 109.18974 * 51.51012 * 15 13 12 31 31 H 1.08996 * 109.60978 * 206.22242 * 16 15 13 32 32 H 1.09005 * 109.60607 * 326.71931 * 16 15 13 33 33 H 0.97000 * 119.78270 * 108.06145 * 17 16 15 34 34 H 1.08999 * 109.62865 * 190.91540 * 20 18 17 35 35 H 1.09002 * 109.62597 * 311.50506 * 20 18 17 36 36 H 1.09001 * 109.22519 * 308.25707 * 21 13 12 37 37 H 1.09006 * 109.22142 * 67.60049 * 21 13 12 38 38 H 1.09002 * 117.49894 * 215.00810 * 22 9 7 39 39 H 1.08997 * 117.49862 * 0.02673 * 22 9 7 40 40 H 1.08999 * 117.49862 * 359.97256 * 23 9 7 41 41 H 1.09004 * 117.50349 * 144.99503 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1033 9 6 1.2580 -2.4952 0.1426 10 6 0.7096 -3.0877 -1.1571 11 16 2.0893 -3.5544 -2.2383 12 6 1.2524 -4.2238 -3.7020 13 6 2.2967 -4.6705 -4.7269 14 1 2.9334 -3.8191 -4.9673 15 6 1.5790 -5.1107 -5.9898 16 6 2.5760 -5.3779 -7.1188 17 7 3.0502 -6.7672 -7.0095 18 6 3.8803 -7.1222 -6.0279 19 8 4.2690 -8.2684 -5.9500 20 6 4.3388 -6.0992 -5.0100 21 6 3.1568 -5.7538 -4.1018 22 6 1.7411 -3.4727 1.2159 23 6 0.4344 -2.7009 1.4155 24 1 -0.4849 0.8369 0.0730 25 1 0.0881 -2.3469 -1.6603 26 1 0.1112 -3.9701 -0.9301 27 1 0.6402 -5.0777 -3.4117 28 1 0.6176 -3.4543 -4.1413 29 1 1.0178 -6.0222 -5.7839 30 1 0.8874 -4.3274 -6.3003 31 1 2.0858 -5.2335 -8.0816 32 1 3.4210 -4.6951 -7.0298 33 1 2.7571 -7.4285 -7.6557 34 1 5.1502 -6.5151 -4.4127 35 1 4.6812 -5.2004 -5.5229 36 1 3.5331 -5.4034 -3.1407 37 1 2.5517 -6.6469 -3.9453 38 1 1.6684 -4.5378 0.9961 39 1 2.5988 -3.1745 1.8189 40 1 0.4329 -1.8952 2.1496 41 1 -0.4982 -3.2583 1.3270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596371609.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -35.946927 kcal Electronic energy + Delta-G solvation = -20043.869312 eV Core-core repulsion = 17049.677536 eV Total energy + Delta-G solvation = -2994.191776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32275 -37.29234 -36.56063 -34.56460 -31.93866 -31.59216 -28.95544 -27.64978 -25.37918 -24.58247 -23.93369 -21.11743 -20.51359 -19.81824 -19.15308 -17.41816 -16.95959 -16.21577 -15.38916 -15.12704 -14.66097 -14.63128 -14.36751 -13.93402 -13.77966 -13.54225 -13.32243 -12.97634 -12.67139 -12.51861 -12.02845 -11.79872 -11.63635 -11.45366 -11.00951 -10.98768 -10.88005 -10.76123 -10.68884 -10.46247 -10.16749 -9.85543 -9.64313 -9.35585 -9.20365 -8.81574 -8.44063 -8.01638 -6.79237 -6.05312 -4.10271 2.37070 2.56202 3.13147 3.29628 3.36611 3.41037 3.49636 4.36535 4.41440 4.49900 4.57504 4.62931 5.03352 5.11227 5.19653 5.24033 5.26767 5.37749 5.45210 5.45320 5.58267 5.74627 5.81539 5.90544 5.97265 5.97331 6.20957 6.24647 6.29139 6.39771 6.53058 6.61352 6.73476 6.80732 7.06121 7.07045 7.40050 7.48395 7.88013 8.09997 8.39626 8.91600 9.55829 11.03861 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024909 B = 0.003753 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.806862 B = 7458.604386 C = 7827.083064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.028 4.028 11 S -0.244 6.244 12 C -0.100 4.100 13 C -0.070 4.070 14 H 0.081 0.919 15 C -0.135 4.135 16 C 0.109 3.891 17 N -0.726 5.726 18 C 0.519 3.481 19 O -0.558 6.558 20 C -0.137 4.137 21 C -0.112 4.112 22 C -0.204 4.204 23 C -0.150 4.150 24 H 0.259 0.741 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 -8.540 -12.935 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.176 4.176 11 S -0.015 6.015 12 C -0.248 4.248 13 C -0.089 4.089 14 H 0.099 0.901 15 C -0.175 4.175 16 C -0.015 4.015 17 N -0.379 5.379 18 C 0.306 3.694 19 O -0.436 6.436 20 C -0.178 4.178 21 C -0.150 4.150 22 C -0.242 4.242 23 C -0.190 4.190 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.233 0.767 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.072 -8.743 -12.633 15.668 hybrid contribution -1.366 0.729 -0.416 1.603 sum 1.707 -8.014 -13.049 15.408 Atomic orbital electron populations 1.70017 1.05873 1.26754 1.49323 1.24941 0.94762 0.98859 0.94549 0.86664 0.80046 0.83529 0.78200 1.20576 1.21319 1.19824 1.20381 0.92919 0.88463 1.50272 0.91984 1.18446 0.98044 0.93890 0.84224 1.23092 0.95459 1.00263 0.98761 1.86743 1.18437 1.80047 1.16267 1.23475 1.00729 1.02522 0.98083 1.20571 0.96175 0.98760 0.93410 0.90068 1.21908 0.98345 1.02618 0.94586 1.21792 0.98085 0.82351 0.99279 1.45993 1.48750 1.12235 1.30875 1.20745 0.77609 0.89370 0.81656 1.90740 1.57215 1.21097 1.74591 1.21998 1.00256 0.98667 0.96838 1.21399 0.95242 0.98697 0.99628 1.23014 0.98363 0.95797 1.07017 1.22577 0.92212 1.01203 1.02965 0.93117 0.89977 0.93609 0.91261 0.90593 0.91097 0.90202 0.89463 0.90240 0.76696 0.88376 0.89200 0.88437 0.91751 0.91456 0.90303 0.89831 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.31 12.90 55.43 0.71 -23.59 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.83 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.48 -12.83 8.49 -34.44 -0.29 -13.12 16 8 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.06 1.33 1.34 -155.66 -0.21 1.12 16 10 C -0.03 -0.60 5.80 37.16 0.22 -0.38 16 11 S -0.24 -4.53 19.78 -107.50 -2.13 -6.66 16 12 C -0.10 -1.37 5.33 37.15 0.20 -1.17 16 13 C -0.07 -0.75 1.75 -91.85 -0.16 -0.91 16 14 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 15 C -0.13 -1.08 4.98 -27.36 -0.14 -1.22 16 16 C 0.11 0.70 6.47 -3.67 -0.02 0.68 16 17 N -0.73 -6.23 5.27 -59.90 -0.32 -6.55 16 18 C 0.52 6.17 7.06 -11.26 -0.08 6.09 16 19 O -0.56 -9.03 17.92 5.55 0.10 -8.93 16 20 C -0.14 -1.44 5.57 -27.52 -0.15 -1.59 16 21 C -0.11 -1.28 4.83 -27.34 -0.13 -1.41 16 22 C -0.20 -4.42 9.96 -26.69 -0.27 -4.69 16 23 C -0.15 -3.44 9.40 -26.70 -0.25 -3.69 16 24 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 25 H 0.08 1.95 8.14 -51.92 -0.42 1.52 16 26 H 0.05 0.92 8.09 -51.92 -0.42 0.49 16 27 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 30 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.49 6.71 -51.93 -0.35 0.14 16 33 H 0.40 2.97 8.91 -40.82 -0.36 2.60 16 34 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.09 0.78 6.77 -51.93 -0.35 0.43 16 36 H 0.10 1.29 6.53 -51.93 -0.34 0.95 16 37 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -30.38 341.26 -9.71 -40.10 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.82 Total: 3.15 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -1.39 Total: -18.46 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.40 Total: -30.14 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.10 Total: -8.93 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.13 Total: -6.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.38 -9.71 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596371609.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.149 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds