Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47269 * 179.97438 * 3 2 1 5 5 C 1.33386 * 125.20252 * 90.00572 * 4 3 2 6 6 C 1.38429 * 114.92023 * 179.79528 * 5 4 3 7 7 C 1.33384 * 114.91852 * 0.42025 * 6 5 4 8 8 C 1.50700 * 125.20229 * 179.86308 * 7 6 5 9 9 N 1.46511 * 109.47156 * 94.73128 * 8 7 6 10 10 C 1.36936 * 119.99719 * 270.96721 * 9 8 7 11 11 H 1.07998 * 119.99928 * 352.42261 * 10 9 8 12 12 C 1.38809 * 119.99733 * 172.42874 * 10 9 8 13 13 N 1.31622 * 120.00092 * 40.00276 * 12 10 9 14 14 Si 1.86802 * 119.99996 * 220.00190 * 12 10 9 15 15 H 1.48498 * 109.47049 * 59.99767 * 14 12 10 16 16 H 1.48500 * 109.46946 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46963 * 299.99809 * 14 12 10 18 18 C 1.46500 * 119.99721 * 91.23961 * 9 8 7 19 19 C 1.52993 * 109.47048 * 84.10558 * 18 9 8 20 20 O 1.42891 * 109.47621 * 61.71199 * 19 18 9 21 21 C 1.42901 * 114.00498 * 179.97438 * 20 19 18 22 22 S 1.75882 * 109.59616 * 359.60009 * 7 6 5 23 23 H 1.09002 * 109.47075 * 60.00609 * 1 2 3 24 24 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47324 * 300.00309 * 1 2 3 26 26 H 1.08998 * 109.47324 * 239.99691 * 2 1 3 27 27 H 1.09002 * 109.47075 * 119.99391 * 2 1 3 28 28 H 1.09004 * 109.46990 * 59.99279 * 3 2 1 29 29 H 1.09004 * 109.47324 * 299.99914 * 3 2 1 30 30 H 1.07998 * 122.53881 * 0.02562 * 5 4 3 31 31 H 1.07994 * 122.53997 * 180.27253 * 6 5 4 32 32 H 1.08998 * 109.47448 * 334.73391 * 8 7 6 33 33 H 1.09002 * 109.47502 * 214.73023 * 8 7 6 34 34 H 0.97000 * 120.00199 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47110 * 204.10609 * 18 9 8 36 36 H 1.09007 * 109.46887 * 324.10278 * 18 9 8 37 37 H 1.09006 * 109.47274 * 181.71241 * 19 18 9 38 38 H 1.09003 * 109.47565 * 301.70841 * 19 18 9 39 39 H 1.08997 * 109.47396 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46976 * 299.99820 * 21 20 19 41 41 H 1.08995 * 109.47030 * 59.99925 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3163 1.4424 -1.0890 6 6 5.6783 1.4470 -0.8413 7 6 6.0148 1.4418 0.4494 8 6 7.4255 1.4422 0.9793 9 7 7.8400 2.8183 1.2639 10 6 8.4312 3.5716 0.2851 11 1 8.7034 3.1168 -0.6559 12 6 8.6807 4.9197 0.5023 13 7 9.1146 5.3279 1.6760 14 14 8.4007 6.1546 -0.8711 15 1 6.9761 6.1160 -1.2885 16 1 8.7377 7.5176 -0.3874 17 1 9.2652 5.8117 -2.0288 18 6 7.6274 3.3863 2.5975 19 6 8.7843 2.9832 3.5139 20 8 10.0074 3.5112 2.9973 21 6 11.1569 3.1911 3.7837 22 16 4.5603 1.4421 1.4382 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6765 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9077 1.4428 -2.0886 31 1 6.4127 1.4518 -1.6331 32 1 8.0934 1.0082 0.2352 33 1 7.4699 0.8526 1.8951 34 1 9.2886 6.2700 1.8280 35 1 7.5818 4.4730 2.5265 36 1 6.6904 3.0094 3.0078 37 1 8.6109 3.3804 4.5141 38 1 8.8489 1.8962 3.5609 39 1 12.0439 3.6282 3.3254 40 1 11.0325 3.5929 4.7893 41 1 11.2708 2.1084 3.8366 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598677726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = 17.001484 kcal Electronic energy + Delta-G solvation = -20375.621727 eV Core-core repulsion = 17383.725966 eV Total energy + Delta-G solvation = -2991.895761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -37.74822 -36.82932 -35.43088 -34.48683 -31.66554 -30.13148 -28.65833 -26.96190 -25.28065 -24.42395 -22.93611 -22.23106 -21.30833 -20.24796 -18.12852 -16.96373 -16.16690 -15.44593 -15.00765 -14.72517 -14.64934 -14.37228 -13.74842 -13.63000 -13.51630 -13.43525 -12.95701 -12.63694 -12.36049 -11.96770 -11.67500 -11.53721 -11.32747 -11.15830 -11.14207 -10.96780 -10.72290 -10.67994 -10.50402 -10.39697 -10.15323 -10.03856 -9.82651 -9.44359 -8.32781 -8.03717 -7.88056 -7.82281 -6.96094 -5.71761 -2.82924 1.61178 2.22221 2.64765 3.36436 3.51141 3.58565 3.65244 4.64589 4.86997 4.95604 5.05508 5.08045 5.35969 5.45371 5.54269 5.59055 5.67131 5.72049 5.76463 5.91233 6.01236 6.06343 6.09060 6.12027 6.19625 6.23322 6.30162 6.33496 6.44897 6.49348 6.52813 6.76397 6.77488 6.85440 7.00775 7.19011 7.65096 7.95603 8.32849 8.65133 9.23587 9.94359 10.38693 11.28256 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.004854 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.623050 B = 5767.056442 C = 6647.185177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.042 4.042 4 C -0.203 4.203 5 C -0.126 4.126 6 C -0.152 4.152 7 C -0.145 4.145 8 C 0.213 3.787 9 N -0.574 5.574 10 C -0.273 4.273 11 H 0.075 0.925 12 C 0.030 3.970 13 N -0.824 5.824 14 Si 0.847 3.153 15 H -0.288 1.288 16 H -0.294 1.294 17 H -0.286 1.286 18 C 0.147 3.853 19 C 0.060 3.940 20 O -0.291 6.291 21 C 0.025 3.975 22 S 0.065 5.935 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.024 0.976 37 H 0.016 0.984 38 H 0.010 0.990 39 H 0.069 0.931 40 H 0.017 0.983 41 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 -9.140 1.070 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.081 4.081 4 C -0.320 4.320 5 C -0.157 4.157 6 C -0.182 4.182 7 C -0.266 4.266 8 C 0.083 3.917 9 N -0.293 5.293 10 C -0.400 4.400 11 H 0.092 0.908 12 C -0.171 4.171 13 N -0.464 5.464 14 Si 0.675 3.325 15 H -0.215 1.215 16 H -0.221 1.221 17 H -0.212 1.212 18 C 0.021 3.979 19 C -0.020 4.020 20 O -0.207 6.207 21 C -0.073 4.073 22 S 0.328 5.672 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.128 0.872 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.088 0.912 40 H 0.035 0.965 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.181 -8.831 2.552 13.717 hybrid contribution 0.244 0.689 -2.015 2.144 sum -9.938 -8.143 0.537 12.859 Atomic orbital electron populations 1.21789 0.95921 1.01494 1.01748 1.21544 0.95245 0.96395 1.02477 1.20057 0.88496 0.97051 1.02502 1.24207 0.98650 1.13042 0.96119 1.19983 0.93317 1.03963 0.98394 1.19931 0.95467 1.06469 0.96331 1.26222 0.99785 1.04337 0.96254 1.19307 0.86788 0.87770 0.97841 1.43964 1.66693 1.09760 1.08864 1.18807 1.36973 0.90066 0.94176 0.90753 1.24671 0.99714 0.97219 0.95531 1.70529 1.38496 1.14375 1.22997 0.87139 0.78929 0.81865 0.84539 1.21499 1.22052 1.21206 1.21378 0.90605 1.02642 0.83246 1.22910 0.89315 0.94089 0.95712 1.88784 1.11907 1.73702 1.46304 1.22607 0.92360 0.97219 0.95149 1.83995 0.98088 1.74365 1.10749 0.92781 0.92804 0.92769 0.91807 0.91871 0.91386 0.90801 0.85634 0.85046 0.91520 0.93546 0.94055 0.87165 0.95795 0.96556 0.97210 0.91241 0.96461 0.96711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.04 -0.51 5.71 -27.89 -0.16 -0.67 16 4 C -0.20 -3.16 5.76 -36.00 -0.21 -3.36 16 5 C -0.13 -2.04 10.05 -41.21 -0.41 -2.46 16 6 C -0.15 -2.78 10.05 -41.21 -0.41 -3.20 16 7 C -0.14 -2.77 6.09 -36.00 -0.22 -2.98 16 8 C 0.21 4.34 6.18 -5.19 -0.03 4.31 16 9 N -0.57 -13.81 2.44 -174.61 -0.43 -14.24 16 10 C -0.27 -7.34 9.33 -15.06 -0.14 -7.48 16 11 H 0.07 2.02 8.05 -52.49 -0.42 1.59 16 12 C 0.03 0.82 4.80 -17.43 -0.08 0.74 16 13 N -0.82 -22.79 8.19 55.49 0.45 -22.34 16 14 Si 0.85 21.36 29.69 -169.99 -5.05 16.31 16 15 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 16 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 C 0.15 3.43 5.57 -4.05 -0.02 3.41 16 19 C 0.06 1.31 6.27 37.15 0.23 1.54 16 20 O -0.29 -7.03 7.65 -35.23 -0.27 -7.30 16 21 C 0.02 0.48 11.01 101.05 1.11 1.59 16 22 S 0.07 1.11 23.31 -107.50 -2.51 -1.40 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.11 2.91 5.31 -51.93 -0.28 2.64 16 36 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -28.83 348.95 -9.68 -38.51 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.01 Total: -3.91 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.14 Total: -10.90 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.03 Total: -36.57 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.27 Total: -7.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.05 Total: 16.31 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.83 -9.68 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598677726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.515 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds