Wall clock time and date at job start Tue Mar 31 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 S 1.81396 * 109.46987 * 179.71878 * 9 7 2 11 11 C 1.81397 * 102.99963 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.43321 * 52.46241 * 11 10 9 13 13 C 1.54628 * 110.48631 * 175.00215 * 11 10 9 14 14 C 1.54480 * 101.76625 * 143.48006 * 13 11 10 15 15 N 1.46761 * 105.47132 * 334.58368 * 14 13 11 16 16 C 1.46502 * 124.34942 * 197.01784 * 15 14 13 17 17 C 1.53005 * 109.47069 * 239.99807 * 16 15 14 18 18 C 1.53005 * 109.47077 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47240 * 59.99851 * 18 17 16 20 20 C 1.53004 * 109.47118 * 300.00620 * 19 18 17 21 21 C 1.52997 * 109.47681 * 59.99747 * 20 19 18 22 22 C 1.34417 * 111.30308 * 17.01882 * 15 14 13 23 23 O 1.21287 * 124.94673 * 179.63084 * 22 15 14 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09005 * 110.96712 * 261.59227 * 13 11 10 28 28 H 1.08990 * 110.97333 * 25.35957 * 13 11 10 29 29 H 1.09006 * 110.24833 * 93.58013 * 14 13 11 30 30 H 1.08994 * 110.24940 * 215.58641 * 14 13 11 31 31 H 1.08998 * 109.47190 * 359.97438 * 16 15 14 32 32 H 1.08998 * 109.47112 * 300.00045 * 17 16 15 33 33 H 1.08994 * 109.47332 * 60.00205 * 17 16 15 34 34 H 1.09000 * 109.46914 * 300.00466 * 18 17 16 35 35 H 1.08998 * 109.46943 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47494 * 179.97438 * 19 18 17 37 37 H 1.09008 * 109.47025 * 59.99936 * 19 18 17 38 38 H 1.08998 * 109.46707 * 299.99515 * 20 19 18 39 39 H 1.09002 * 109.47096 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.46839 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.46993 * 59.99612 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 16 2.4296 -3.8780 -0.0115 11 6 1.3513 -5.3367 -0.0173 12 1 0.6244 -5.2693 -0.8268 13 6 2.1900 -6.6291 -0.1491 14 6 1.4066 -7.6065 0.7549 15 7 0.7022 -6.7619 1.7267 16 6 0.1281 -7.2499 2.9831 17 6 -1.3785 -6.9830 2.9930 18 6 -1.9779 -7.4921 4.3055 19 6 -1.3233 -6.7643 5.4814 20 6 0.1833 -7.0310 5.4713 21 6 0.7827 -6.5220 4.1590 22 6 0.6513 -5.4831 1.3158 23 8 0.1220 -4.5780 1.9255 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.2061 -6.9800 -1.1810 28 1 3.2021 -6.4773 0.2255 29 1 0.6911 -8.1771 0.1627 30 1 2.0939 -8.2789 1.2681 31 1 0.3075 -8.3212 3.0726 32 1 -1.5583 -5.9117 2.9033 33 1 -1.8448 -7.5011 2.1551 34 1 -1.7980 -8.5633 4.3957 35 1 -3.0513 -7.3024 4.3124 36 1 -1.7506 -7.1266 6.4163 37 1 -1.5031 -5.6929 5.3912 38 1 0.3631 -8.1023 5.5615 39 1 0.6497 -6.5122 6.3088 40 1 1.8559 -6.7125 4.1518 41 1 0.6028 -5.4507 4.0688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600558486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:43 Heat of formation + Delta-G solvation = -57.881612 kcal Electronic energy + Delta-G solvation = -20699.244893 eV Core-core repulsion = 17704.101957 eV Total energy + Delta-G solvation = -2995.142936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44366 -37.85007 -36.02764 -33.01801 -32.61094 -30.80713 -28.72244 -28.39361 -27.39145 -23.13880 -22.93300 -22.64317 -21.67983 -20.11750 -18.82604 -16.85937 -16.62086 -16.24179 -15.61849 -14.82199 -14.73686 -14.35960 -14.14880 -13.98364 -13.75127 -13.55412 -13.20540 -12.88157 -12.40012 -12.38195 -12.24340 -12.16281 -11.88415 -11.66175 -11.39611 -11.24348 -11.03398 -10.80122 -10.71221 -10.57083 -10.37973 -10.29032 -9.90117 -9.45392 -9.40330 -8.78447 -8.51821 -8.48545 -6.66454 -6.07228 -4.11329 2.32586 3.08353 3.18724 3.32336 3.37570 3.43181 3.88335 4.42495 4.45318 4.62031 4.69155 4.71789 4.85503 4.98792 5.06859 5.17883 5.22419 5.26979 5.29405 5.40908 5.45120 5.45943 5.52184 5.60042 5.70618 5.84696 5.92402 5.97015 6.04457 6.07590 6.15790 6.22324 6.31141 6.40312 6.82633 7.24661 7.29666 7.50076 7.85013 8.14286 8.55458 8.89966 9.50011 11.03937 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.004602 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.089896 B = 6082.402265 C = 6948.001770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.086 3.914 10 S -0.263 6.263 11 C -0.107 4.107 12 H 0.111 0.889 13 C -0.106 4.106 14 C 0.108 3.892 15 N -0.623 5.623 16 C 0.167 3.833 17 C -0.136 4.136 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.527 3.473 23 O -0.498 6.498 24 H 0.264 0.736 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -20.083 5.755 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.082 0.918 9 C -0.061 4.061 10 S -0.034 6.034 11 C -0.239 4.239 12 H 0.129 0.871 13 C -0.145 4.145 14 C -0.016 4.016 15 N -0.359 5.359 16 C 0.064 3.936 17 C -0.175 4.175 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.175 4.175 22 C 0.311 3.689 23 O -0.371 6.371 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.093 -19.445 6.120 20.386 hybrid contribution -0.930 0.797 -0.154 1.234 sum -1.023 -18.649 5.965 19.606 Atomic orbital electron populations 1.69983 1.06087 1.27074 1.49638 1.24946 0.94934 0.99097 0.94841 0.86388 0.79762 0.82478 0.78211 1.20431 1.21010 1.19616 1.20666 0.93259 0.88943 1.52304 0.91753 1.21217 0.93656 0.89995 1.01197 1.86541 1.18969 1.00514 1.97401 1.23836 1.01500 0.99524 0.98994 0.87055 1.22454 0.99248 0.91838 1.00934 1.22050 0.95329 0.93564 0.90673 1.48397 1.57850 1.09027 1.20630 1.20889 0.92754 0.97684 0.82250 1.21957 0.94458 1.03664 0.97403 1.21462 0.99683 0.99551 0.94318 1.21576 0.95369 1.01299 0.97832 1.21465 0.95655 1.00671 0.97240 1.21953 0.99479 1.02614 0.93445 1.20810 0.78939 0.82060 0.87096 1.90756 1.44256 1.42255 1.59848 0.92636 0.92270 0.95070 0.88856 0.89237 0.91376 0.90574 0.90024 0.89937 0.92101 0.92238 0.91813 0.92136 0.91490 0.92265 0.91741 0.91907 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.20 9.13 -34.44 -0.31 -15.51 16 8 H 0.06 1.89 7.71 -52.49 -0.40 1.49 16 9 C 0.09 2.40 5.47 36.01 0.20 2.60 16 10 S -0.26 -5.91 20.91 -107.50 -2.25 -8.16 16 11 C -0.11 -1.86 3.44 -26.74 -0.09 -1.95 16 12 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 13 C -0.11 -1.28 6.72 -25.10 -0.17 -1.45 16 14 C 0.11 1.11 7.30 -3.12 -0.02 1.08 16 15 N -0.62 -8.64 2.83 -164.84 -0.47 -9.10 16 16 C 0.17 2.02 2.75 -67.92 -0.19 1.83 16 17 C -0.14 -1.69 5.21 -26.73 -0.14 -1.83 16 18 C -0.11 -1.11 5.92 -26.73 -0.16 -1.27 16 19 C -0.12 -1.27 5.92 -26.73 -0.16 -1.42 16 20 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 21 C -0.14 -1.77 5.21 -26.73 -0.14 -1.91 16 22 C 0.53 9.73 6.84 -10.86 -0.07 9.66 16 23 O -0.50 -11.40 13.22 5.55 0.07 -11.33 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.06 1.81 6.58 -51.92 -0.34 1.46 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.09 1.12 7.88 -51.93 -0.41 0.71 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.08 1.32 6.77 -51.93 -0.35 0.97 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.41 6.79 -51.93 -0.35 1.05 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -33.36 334.34 -10.31 -43.67 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.91 Total: -1.12 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.51 Total: -9.65 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.27 Total: -35.65 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.25 Total: -8.16 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.36 -10.31 -43.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600558486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.215 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds