Wall clock time and date at job start Tue Mar 31 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 S 1.81396 * 109.46987 * 179.71878 * 9 7 2 11 11 C 1.81397 * 102.99963 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.43321 * 52.46241 * 11 10 9 13 13 C 1.54628 * 110.48631 * 175.00215 * 11 10 9 14 14 C 1.54480 * 101.76625 * 143.48006 * 13 11 10 15 15 N 1.46761 * 105.47132 * 334.58368 * 14 13 11 16 16 C 1.46502 * 124.34942 * 197.01784 * 15 14 13 17 17 C 1.53005 * 109.47069 * 239.99807 * 16 15 14 18 18 C 1.53005 * 109.47077 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47240 * 59.99851 * 18 17 16 20 20 C 1.53004 * 109.47118 * 300.00620 * 19 18 17 21 21 C 1.52997 * 109.47681 * 59.99747 * 20 19 18 22 22 C 1.34417 * 111.30308 * 17.01882 * 15 14 13 23 23 O 1.21287 * 124.94673 * 179.63084 * 22 15 14 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09005 * 110.96712 * 261.59227 * 13 11 10 28 28 H 1.08990 * 110.97333 * 25.35957 * 13 11 10 29 29 H 1.09006 * 110.24833 * 93.58013 * 14 13 11 30 30 H 1.08994 * 110.24940 * 215.58641 * 14 13 11 31 31 H 1.08998 * 109.47190 * 359.97438 * 16 15 14 32 32 H 1.08998 * 109.47112 * 300.00045 * 17 16 15 33 33 H 1.08994 * 109.47332 * 60.00205 * 17 16 15 34 34 H 1.09000 * 109.46914 * 300.00466 * 18 17 16 35 35 H 1.08998 * 109.46943 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47494 * 179.97438 * 19 18 17 37 37 H 1.09008 * 109.47025 * 59.99936 * 19 18 17 38 38 H 1.08998 * 109.46707 * 299.99515 * 20 19 18 39 39 H 1.09002 * 109.47096 * 179.97438 * 20 19 18 40 40 H 1.08999 * 109.46839 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.46993 * 59.99612 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 16 2.4296 -3.8780 -0.0115 11 6 1.3513 -5.3367 -0.0173 12 1 0.6244 -5.2693 -0.8268 13 6 2.1900 -6.6291 -0.1491 14 6 1.4066 -7.6065 0.7549 15 7 0.7022 -6.7619 1.7267 16 6 0.1281 -7.2499 2.9831 17 6 -1.3785 -6.9830 2.9930 18 6 -1.9779 -7.4921 4.3055 19 6 -1.3233 -6.7643 5.4814 20 6 0.1833 -7.0310 5.4713 21 6 0.7827 -6.5220 4.1590 22 6 0.6513 -5.4831 1.3158 23 8 0.1220 -4.5780 1.9255 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.2061 -6.9800 -1.1810 28 1 3.2021 -6.4773 0.2255 29 1 0.6911 -8.1771 0.1627 30 1 2.0939 -8.2789 1.2681 31 1 0.3075 -8.3212 3.0726 32 1 -1.5583 -5.9117 2.9033 33 1 -1.8448 -7.5011 2.1551 34 1 -1.7980 -8.5633 4.3957 35 1 -3.0513 -7.3024 4.3124 36 1 -1.7506 -7.1266 6.4163 37 1 -1.5031 -5.6929 5.3912 38 1 0.3631 -8.1023 5.5615 39 1 0.6497 -6.5122 6.3088 40 1 1.8559 -6.7125 4.1518 41 1 0.6028 -5.4507 4.0688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600558486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:42 Heat of formation + Delta-G solvation = -78.352422 kcal Electronic energy + Delta-G solvation = -20700.132574 eV Core-core repulsion = 17704.101957 eV Total energy + Delta-G solvation = -2996.030617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65445 -38.87355 -37.37931 -35.30027 -33.66366 -31.72335 -30.68577 -29.76650 -28.57177 -25.29727 -23.94891 -23.56091 -22.90037 -21.05616 -20.04535 -18.70066 -17.95979 -17.80488 -17.08905 -16.61772 -15.79901 -15.68815 -15.25694 -15.13544 -14.91941 -14.71708 -14.65105 -14.54295 -14.16957 -13.87069 -13.50121 -13.33368 -13.14881 -13.07526 -12.75239 -12.50988 -12.44058 -12.25131 -12.05865 -11.84347 -11.60009 -11.44129 -11.29941 -11.19585 -11.02529 -10.77073 -10.58688 -9.62189 -8.53488 -8.34051 -6.49119 0.73312 1.35149 1.38864 1.50066 1.65476 1.88518 2.09765 2.34519 2.99508 3.22909 3.55033 3.72286 3.78563 3.92772 4.01584 4.07737 4.22346 4.25662 4.36849 4.45060 4.54976 4.58743 4.59399 4.69320 4.89847 4.90522 4.94662 5.03214 5.05020 5.10033 5.12574 5.17470 5.25439 5.26505 5.36027 5.48815 5.53462 5.76440 5.87174 6.12705 6.59129 7.18373 7.20388 8.78558 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.004602 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.089896 B = 6082.402265 C = 6948.001770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.089 3.911 10 S -0.261 6.261 11 C -0.106 4.106 12 H 0.111 0.889 13 C -0.095 4.095 14 C 0.107 3.893 15 N -0.612 5.612 16 C 0.163 3.837 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.135 4.135 22 C 0.512 3.488 23 O -0.559 6.559 24 H 0.269 0.731 25 H 0.018 0.982 26 H 0.004 0.996 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -23.495 5.872 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.059 4.059 10 S -0.032 6.032 11 C -0.238 4.238 12 H 0.129 0.871 13 C -0.133 4.133 14 C -0.015 4.015 15 N -0.346 5.346 16 C 0.061 3.939 17 C -0.173 4.173 18 C -0.144 4.144 19 C -0.163 4.163 20 C -0.144 4.144 21 C -0.174 4.174 22 C 0.297 3.703 23 O -0.437 6.437 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.023 0.977 27 H 0.146 0.854 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.255 -22.917 6.228 23.782 hybrid contribution -1.389 1.721 -0.179 2.218 sum -0.134 -21.197 6.049 22.043 Atomic orbital electron populations 1.70124 1.08023 1.28469 1.50066 1.26046 0.95900 1.03441 0.93705 0.85203 0.78340 0.76979 0.79052 1.18750 1.20099 1.18793 1.21032 0.93362 0.90330 1.53056 0.91822 1.20777 0.94268 0.92974 0.97851 1.86101 1.18729 1.00950 1.97407 1.24077 1.01756 0.99127 0.98888 0.87103 1.22592 0.98308 0.88667 1.03781 1.22448 0.96253 0.92800 0.90030 1.48544 1.56696 1.07825 1.21551 1.21168 0.92082 0.99740 0.80878 1.21917 0.95359 1.00596 0.99456 1.21453 0.99468 1.01125 0.92308 1.21598 0.95953 0.99419 0.99307 1.21454 0.95055 1.02475 0.95385 1.21910 1.00041 0.99620 0.95801 1.21039 0.78786 0.83221 0.87234 1.90740 1.46896 1.44611 1.61466 0.92187 0.96368 0.97749 0.85381 0.89366 0.88087 0.86723 0.85244 0.95093 0.91183 0.88888 0.91691 0.89799 0.94986 0.88870 0.91900 0.91610 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.60 13.29 21.45 0.28 -59.31 16 2 C 0.01 0.57 5.46 84.66 0.46 1.03 16 3 Si 0.98 46.58 29.54 68.60 2.03 48.61 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -33.57 9.13 25.60 0.23 -33.34 16 8 H 0.06 3.87 7.71 -2.91 -0.02 3.85 16 9 C 0.09 5.33 5.47 71.24 0.39 5.72 16 10 S -0.26 -12.20 20.91 -56.49 -1.18 -13.38 16 11 C -0.11 -3.73 3.44 30.59 0.11 -3.63 16 12 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 13 C -0.09 -1.99 6.72 31.65 0.21 -1.77 16 14 C 0.11 1.69 7.30 86.83 0.63 2.32 16 15 N -0.61 -15.98 2.83 -794.02 -2.25 -18.23 16 16 C 0.16 3.61 2.75 44.99 0.12 3.73 16 17 C -0.13 -3.29 5.21 30.60 0.16 -3.13 16 18 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 19 C -0.13 -2.48 5.92 30.60 0.18 -2.30 16 20 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 21 C -0.14 -3.48 5.21 30.60 0.16 -3.32 16 22 C 0.51 19.66 6.84 87.90 0.60 20.26 16 23 O -0.56 -28.12 13.22 -3.05 -0.04 -28.16 16 24 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 25 H 0.02 1.21 6.58 -2.39 -0.02 1.20 16 26 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.09 1.93 7.88 -2.39 -0.02 1.91 16 29 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.13 1.75 8.07 -2.39 -0.02 1.73 16 32 H 0.03 1.08 6.77 -2.39 -0.02 1.06 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.03 1.08 6.79 -2.39 -0.02 1.06 16 Total: -1.00 -82.34 334.34 3.46 -78.88 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.99 Total: 9.53 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.62 Total: -17.94 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -1.96 Total: -77.54 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: -12.20 SS G_CDS: -1.18 Total: -13.38 kcal Total: -82.34 3.46 -78.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600558486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.529 kcal (2) G-P(sol) polarization free energy of solvation -82.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds