Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00049 * 2 1 4 4 H 1.48496 * 109.47202 * 84.41624 * 3 2 1 5 5 H 1.48507 * 109.47000 * 204.41284 * 3 2 1 6 6 H 1.48494 * 109.47464 * 324.41300 * 3 2 1 7 7 C 1.37884 * 119.99908 * 179.72243 * 2 1 3 8 8 H 1.08004 * 119.99690 * 21.89419 * 7 2 1 9 9 C 1.50693 * 119.99858 * 201.90169 * 7 2 1 10 10 C 1.53001 * 115.55503 * 36.12856 * 9 7 2 11 11 N 1.46897 * 109.47254 * 201.02542 * 10 9 7 12 12 C 1.46365 * 111.00242 * 72.30881 * 11 10 9 13 13 C 1.53301 * 109.65689 * 161.38041 * 12 11 10 14 14 S 1.81886 * 108.30830 * 62.40745 * 13 12 11 15 15 C 1.81607 * 102.13385 * 308.81450 * 14 13 12 16 16 H 1.09000 * 109.56979 * 170.59892 * 15 14 13 17 17 C 1.52949 * 109.81947 * 290.99810 * 15 14 13 18 18 O 1.42997 * 109.11565 * 178.17456 * 17 15 14 19 19 C 1.42823 * 114.36524 * 299.51933 * 18 17 15 20 20 C 1.53114 * 109.74846 * 60.22955 * 19 18 17 21 21 C 1.46665 * 111.00131 * 305.96864 * 11 10 9 22 22 H 1.09006 * 109.98615 * 76.37413 * 21 11 10 23 23 C 1.53003 * 117.49884 * 250.46159 * 9 7 2 24 24 C 1.53001 * 117.49674 * 181.80577 * 9 7 2 25 25 H 0.97001 * 119.99567 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47273 * 321.03093 * 10 9 7 27 27 H 1.08999 * 109.46719 * 81.02649 * 10 9 7 28 28 H 1.08999 * 109.43348 * 281.44003 * 12 11 10 29 29 H 1.09000 * 109.43553 * 41.35726 * 12 11 10 30 30 H 1.09002 * 109.69593 * 182.10826 * 13 12 11 31 31 H 1.08997 * 109.69737 * 302.70143 * 13 12 11 32 32 H 1.09001 * 109.52887 * 298.06877 * 17 15 14 33 33 H 1.09007 * 109.53117 * 58.28403 * 17 15 14 34 34 H 1.09002 * 109.42537 * 180.31633 * 19 18 17 35 35 H 1.09005 * 109.42506 * 300.14749 * 19 18 17 36 36 H 1.09006 * 109.59028 * 61.92607 * 20 19 18 37 37 H 1.08999 * 109.59335 * 182.36959 * 20 19 18 38 38 H 1.09009 * 117.49520 * 359.97438 * 23 9 7 39 39 H 1.09000 * 117.50215 * 145.02051 * 23 9 7 40 40 H 1.09008 * 117.49856 * 214.97823 * 24 9 7 41 41 H 1.09003 * 117.50158 * 359.96703 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3787 2.1145 1.3934 5 1 3.6008 1.4089 -0.5787 6 1 1.5107 2.6157 -0.8147 7 6 2.0045 -1.1941 0.0058 8 1 1.5229 -2.0974 -0.3386 9 6 3.4299 -1.2388 0.4928 10 6 3.7564 -0.3108 1.6646 11 7 5.2049 -0.0702 1.7098 12 6 5.6255 0.8062 0.6156 13 6 6.9982 1.4088 0.9362 14 16 8.2025 0.0516 1.0626 15 6 7.3823 -1.0798 2.2225 16 1 7.9277 -2.0228 2.2599 17 6 7.3441 -0.4543 3.6177 18 8 6.6583 -1.3380 4.5085 19 6 5.3053 -1.6113 4.1415 20 6 5.2668 -2.2665 2.7582 21 6 5.9469 -1.3348 1.7434 22 1 5.9597 -1.7858 0.7511 23 6 4.5255 -1.4731 -0.5492 24 6 4.1543 -2.5852 0.4349 25 1 -0.4849 0.8401 -0.0004 26 1 3.2346 0.6371 1.5337 27 1 3.4361 -0.7761 2.5967 28 1 5.6889 0.2294 -0.3071 29 1 4.8975 1.6081 0.4929 30 1 7.2953 2.0905 0.1393 31 1 6.9510 1.9474 1.8826 32 1 8.3620 -0.2955 3.9738 33 1 6.8188 0.5000 3.5749 34 1 4.8600 -2.2846 4.8740 35 1 4.7410 -0.6791 4.1169 36 1 5.8003 -3.2166 2.7887 37 1 4.2314 -2.4356 2.4626 38 1 4.2151 -1.5953 -1.5870 39 1 5.4789 -0.9664 -0.3997 40 1 4.8637 -2.8098 1.2315 41 1 3.5997 -3.4388 0.0450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602784381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = 88.702008 kcal Electronic energy + Delta-G solvation = -22873.940332 eV Core-core repulsion = 19885.153739 eV Total energy + Delta-G solvation = -2988.786593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32139 -37.95258 -34.81826 -32.98017 -32.20654 -31.36631 -29.92233 -27.34347 -25.05204 -24.42160 -23.27467 -22.53454 -21.36038 -19.26974 -18.95363 -17.41552 -16.49704 -16.12087 -16.00069 -15.61018 -15.03926 -15.00314 -14.80866 -14.12328 -13.62024 -13.15243 -12.89858 -12.77422 -12.59659 -12.38058 -12.09236 -11.82987 -11.53917 -11.46506 -11.18163 -11.09699 -10.74748 -10.48569 -10.31117 -10.07089 -9.85789 -9.78079 -9.65045 -9.19373 -9.04917 -8.74451 -8.40492 -7.82157 -7.50965 -6.32099 -4.19767 1.80557 2.51777 3.08358 3.22819 3.26828 4.05364 4.09271 4.22312 4.59716 4.72845 4.86525 5.00409 5.05762 5.14932 5.17493 5.29526 5.33328 5.38521 5.58018 5.66414 5.75622 5.78892 5.85095 5.92416 5.94954 6.02517 6.04673 6.13065 6.14900 6.28192 6.36463 6.46354 6.56377 6.77061 6.91764 7.05844 7.30912 7.31072 7.39791 7.65787 8.36560 8.77740 9.34462 10.78982 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.008081 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.975875 B = 3464.296989 C = 3899.722803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.079 3.921 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.246 1.246 6 H -0.297 1.297 7 C -0.491 4.491 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.076 3.924 11 N -0.544 5.544 12 C 0.018 3.982 13 C -0.076 4.076 14 S -0.268 6.268 15 C -0.076 4.076 16 H 0.111 0.889 17 C 0.081 3.919 18 O -0.385 6.385 19 C 0.063 3.937 20 C -0.169 4.169 21 C 0.055 3.945 22 H 0.108 0.892 23 C -0.248 4.248 24 C -0.244 4.244 25 H 0.267 0.733 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 0.573 5.224 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.171 1.171 6 H -0.225 1.225 7 C -0.528 4.528 8 H 0.092 0.908 9 C -0.007 4.007 10 C -0.050 4.050 11 N -0.268 5.268 12 C -0.110 4.110 13 C -0.224 4.224 14 S -0.040 6.040 15 C -0.205 4.205 16 H 0.129 0.871 17 C 0.002 3.998 18 O -0.304 6.304 19 C -0.014 4.014 20 C -0.208 4.208 21 C -0.054 4.054 22 H 0.125 0.875 23 C -0.285 4.285 24 C -0.280 4.280 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.368 0.759 5.280 15.326 hybrid contribution -1.173 0.721 -0.664 1.528 sum 13.195 1.479 4.616 14.057 Atomic orbital electron populations 1.70019 1.06657 1.27476 1.47062 1.24995 0.94384 0.99166 0.93952 0.87317 0.81539 0.83787 0.77492 1.20435 1.17053 1.22526 1.20283 0.92877 0.96017 1.43643 0.90759 1.19998 0.93351 0.93470 0.93835 1.22162 0.84444 0.99696 0.98659 1.61519 1.06077 1.14583 1.44650 1.23128 0.94955 0.97798 0.95102 1.23624 0.96031 0.97358 1.05429 1.86644 1.32404 1.23893 1.61012 1.24006 0.98967 1.00407 0.97136 0.87059 1.22750 0.97200 0.92966 0.86840 1.87851 1.25735 1.67045 1.49745 1.22650 0.83099 1.00259 0.95374 1.23001 1.04313 0.98306 0.95171 1.22977 0.90550 0.91032 1.00871 0.87502 1.24229 1.01638 1.05516 0.97120 1.24516 1.05870 0.93774 1.03886 0.92353 0.90770 0.89973 0.89615 0.89288 0.87857 0.89442 0.89092 0.91747 0.89368 0.91844 0.90709 0.86537 0.90283 0.88010 0.85798 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.96 55.43 0.77 -24.65 16 2 C 0.08 2.15 5.33 -17.82 -0.10 2.06 16 3 Si 0.87 19.94 23.33 -169.99 -3.97 15.98 16 4 H -0.28 -6.20 6.60 56.52 0.37 -5.83 16 5 H -0.25 -5.20 4.86 56.52 0.27 -4.92 16 6 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.49 -13.06 9.49 -34.44 -0.33 -13.38 16 8 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 9 C 0.00 -0.09 1.58 -155.66 -0.25 -0.34 16 10 C 0.08 1.49 4.27 -3.83 -0.02 1.48 16 11 N -0.54 -8.96 3.04 -226.42 -0.69 -9.65 16 12 C 0.02 0.30 4.05 -3.96 -0.02 0.28 16 13 C -0.08 -1.02 6.37 37.31 0.24 -0.78 16 14 S -0.27 -3.68 21.79 -107.50 -2.34 -6.02 16 15 C -0.08 -1.03 2.85 -26.52 -0.08 -1.11 16 16 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 17 C 0.08 1.09 5.94 37.13 0.22 1.31 16 18 O -0.38 -5.56 10.76 -35.23 -0.38 -5.94 16 19 C 0.06 0.87 6.36 37.22 0.24 1.10 16 20 C -0.17 -2.40 3.20 -26.34 -0.08 -2.49 16 21 C 0.05 0.82 1.26 -67.28 -0.08 0.74 16 22 H 0.11 1.75 3.41 -51.93 -0.18 1.58 16 23 C -0.25 -4.91 7.95 -26.69 -0.21 -5.12 16 24 C -0.24 -4.63 7.75 -26.70 -0.21 -4.84 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 26 H 0.07 1.59 2.46 -51.93 -0.13 1.46 16 27 H 0.08 1.55 5.39 -51.93 -0.28 1.27 16 28 H 0.09 1.49 4.31 -51.93 -0.22 1.27 16 29 H 0.09 1.55 4.71 -51.93 -0.24 1.31 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.92 6.79 -51.93 -0.35 0.57 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.94 6.52 -51.93 -0.34 0.61 16 36 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 37 H 0.12 1.85 4.12 -51.93 -0.21 1.63 16 38 H 0.08 1.67 8.14 -51.92 -0.42 1.24 16 39 H 0.10 1.86 2.57 -51.93 -0.13 1.73 16 40 H 0.12 2.02 2.35 -82.36 -0.19 1.83 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -27.48 281.34 -8.38 -35.86 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.35 Total: 11.28 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -0.67 Total: -21.09 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.09 Total: -34.30 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -3.97 Total: 15.98 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.34 Total: -6.02 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.48 -8.38 -35.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602784381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.559 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds